[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 130 items for (author: kim & gj)

EMDB-62902:
Bacillus subtilis endospore crust protein CgeA
Method: single particle / : Park M, Kim D, Baek Y, Hyun J, Ha NC

PDB-9l9d:
Bacillus subtilis endospore crust protein CgeA
Method: single particle / : Park M, Kim D, Baek Y, Hyun J, Ha NC

EMDB-63935:
structure of human KCNQ1-KCNE1-CaM complex
Method: single particle / : Hou PP, Zhang J, Wan SY, Cheng XY, Zhong L, Hu B

EMDB-64038:
structure of human KCNQ1-KCNE1-CaM complex with PIP2
Method: single particle / : Hou PP, Zhang J, Wan SY, Cheng XY, Zhong L, Hu B

PDB-9u7f:
structure of human KCNQ1-KCNE1-CaM complex
Method: single particle / : Hou PP, Zhang J, Wan SY, Cheng XY, Zhong L, Hu B

PDB-9uc8:
structure of human KCNQ1-KCNE1-CaM complex with PIP2
Method: single particle / : Hou PP, Zhang J, Wan SY, Cheng XY, Zhong L, Hu B

EMDB-62390:
Cryo-EM structure of human SLC22A6 (OAT1) in the apo-state
Method: single particle / : Jeon HM, Eun J, Kim Y

EMDB-62400:
Cryo-EM strucuture of human OAT1 in complex with probenecid
Method: single particle / : Jeon HM, Eun J, Kim Y

EMDB-62418:
Human OAT1 in complex with olmesartan
Method: single particle / : Jeon HM, Eun J, Kim KH, Kim Y

EMDB-64368:
Cryo-EM structure of human OAT1 in complex with olmesartan and bromide ion.
Method: single particle / : Jeon HM, Eun J, Kim KH, Kim Y

PDB-9kkk:
Cryo-EM structure of human SLC22A6 (OAT1) in the apo-state
Method: single particle / : Jeon HM, Eun J, Kim Y

PDB-9kl5:
Cryo-EM strucuture of human OAT1 in complex with probenecid
Method: single particle / : Jeon HM, Eun J, Kim Y

PDB-9klz:
Human OAT1 in complex with olmesartan
Method: single particle / : Jeon HM, Eun J, Kim KH, Kim Y

PDB-9unx:
Cryo-EM structure of human OAT1 in complex with olmesartan and bromide ion.
Method: single particle / : Jeon HM, Eun J, Kim KH, Kim Y

EMDB-65215:
Bacillus Subtilis Ku core homodimer complexed with double strand DNA
Method: single particle / : Kim WJ, Kim MS

PDB-9vnq:
Bacillus Subtilis Ku core homodimer complexed with double strand DNA
Method: single particle / : Kim WJ, Kim MS

EMDB-63065:
Cryo-EM structure of CotVW filament, bacillus subtilis endospore protein
Method: helical / : Jo E, Kim D, Baek Y, Ha NC

PDB-9lgh:
Cryo-EM structure of CotVW filament, bacillus subtilis endospore protein
Method: helical / : Jo E, Kim D, Baek Y, Ha NC

EMDB-60854:
Cryo-EM structure of urease from Ureaplasma parvum
Method: single particle / : Fujita J, Namba K, Wu HN, Yanagihara I

PDB-9it2:
Cryo-EM structure of urease from Ureaplasma parvum
Method: single particle / : Fujita J, Namba K, Wu HN, Yanagihara I

EMDB-39097:
Cryo-ET structure of huntingtin actin complex
Method: subtomogram averaging / : Kim J, Kim H, Fassler F, Hansen JM, Schur FKM, Song JJ

EMDB-39103:
Cryo-ET structure of huntingtin actin dimer complex
Method: subtomogram averaging / : Kim J, Kim H, Fassler F, Hansen JM, Schur FKM, Song JJ

PDB-8yae:
Cryo-ET structure of huntingtin actin complex
Method: subtomogram averaging / : Kim J, Kim H, Fassler F, Hansen JM, Schur FKM, Song JJ

PDB-8yao:
Cryo-ET structure of huntingtin actin dimer complex
Method: subtomogram averaging / : Kim J, Kim H, Fassler F, Hansen JM, Schur FKM, Song JJ

EMDB-61285:
Cryo-EM structure of Outward state Anhydromuropeptide permease (AmpG) complex with GlcNAc-1,6-anhMurNAc
Method: single particle / : Chang N, Kim U, Cho H

PDB-9j9z:
Cryo-EM structure of Outward state Anhydromuropeptide permease (AmpG) complex with GlcNAc-1,6-anhMurNAc
Method: single particle / : Chang N, Kim U, Cho H

EMDB-51514:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 without any binding partner.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-51515:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 engaged to MIA40.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-51516:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 bound by AK2A.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gqy:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 without any binding partner.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gqz:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 engaged to MIA40.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gr0:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 bound by AK2A.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-60093:
Cryo-EM structure of inward state Anhydromuropeptide permease (AmpG)
Method: single particle / : Cho HS, Kim U, Chang N, Kim H, Yoo Y

EMDB-60190:
Cryo-EM structure of inward-facing Anhydromuropeptide permease (AmpG) in complex with GlcNAc-1,6-anhMurNAc
Method: single particle / : Chang N, Kim U, Yoo Y, Kim H, Cho H

PDB-8zgz:
Cryo-EM structure of inward state Anhydromuropeptide permease (AmpG)
Method: single particle / : Cho HS, Kim U, Chang N, Kim H, Yoo Y

PDB-8zke:
Cryo-EM structure of inward-facing Anhydromuropeptide permease (AmpG) in complex with GlcNAc-1,6-anhMurNAc
Method: single particle / : Chang N, Kim U, Yoo Y, Kim H, Cho H

EMDB-48283:
61-12A01 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48286:
206-3G08 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48287:
206-9C09 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48290:
273-4D01 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48291:
253-7A03 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-70490:
BG505 GT1.1 SOSIP in complex with gp41-base epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70491:
BG505 GT1.1 SOSIP in complex with V1V2V3 epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70492:
BG505 GT1.1 SOSIP in complex with C3V5 epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70493:
BG505 GT1.1 SOSIP in complex with CD4bs epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70494:
BG505 GT1.1 SOSIP in complex with gp41 glycan hole epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70495:
BG505 GT1.1 SOSIP in complex with gp41 fusion peptide epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-39900:
Cryo-EM structure of outward state Anhydromuropeptide permease (AmpG) G50W/L269W
Method: single particle / : Yoo Y, Chang N, Kim U, Kim H, Cho H

PDB-8zbb:
Cryo-EM structure of outward state Anhydromuropeptide permease (AmpG) G50W/L269W
Method: single particle / : Yoo Y, Chang N, Kim U, Kim H, Cho H

EMDB-41821:
Plasmodium falciparum gametocyte surface protein Pfs48/45 in complex with neutralizing antibodies
Method: single particle / : Kucharska I, Hailemariam S, Ivanochko D, Rubinstein J, Julien JP

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more