[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 62 items for (author: kim & gj)

EMDB-37593:
Vibrio vulnificus MARTX effector duet (RDTND-RID) complexed with human Rac1 Q61L and calmodulin
Method: single particle / : Lee Y, Choi S, Jang SY, Hwang J, Kim MH

EMDB-35904:
AtSLAC1 8D mutant in closed state
Method: single particle / : Lee Y, Lee S

EMDB-35920:
AtSLAC1 in open state
Method: single particle / : Lee Y, Lee S

PDB-8j0j:
AtSLAC1 8D mutant in closed state
Method: single particle / : Lee Y, Lee S

PDB-8j1e:
AtSLAC1 in open state
Method: single particle / : Lee Y, Lee S

EMDB-34303:
AtSLAC1 6D mutant in closed state
Method: single particle / : Lee Y, Lee S

EMDB-34304:
AtSLAC1 6D mutant in open state
Method: single particle / : Lee Y, Lee S

PDB-8gw6:
AtSLAC1 6D mutant in closed state
Method: single particle / : Lee Y, Lee S

PDB-8gw7:
AtSLAC1 6D mutant in open state
Method: single particle / : Lee Y, Lee S

EMDB-28728:
Structure of 3A10 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase
Method: single particle / : Mou Z, Lei R, Wu NC, Dai X

EMDB-28729:
Structure of 1F04 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase
Method: single particle / : Mou Z, Lei R, Wu NC, Dai X

EMDB-28730:
Structure of 3C08 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase
Method: single particle / : Mou Z, Lei R, Wu NC, Dai X

PDB-8ez3:
Structure of 3A10 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase
Method: single particle / : Mou Z, Lei R, Wu NC, Dai X

PDB-8ez7:
Structure of 1F04 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase
Method: single particle / : Mou Z, Lei R, Wu NC, Dai X

PDB-8ez8:
Structure of 3C08 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase
Method: single particle / : Mou Z, Lei R, Wu NC, Dai X

EMDB-28281:
Subtomogram average of the T4SS of Coxiella Burnetii at pH 4.75
Method: subtomogram averaging / : Kaplan M, Ghosal D

EMDB-28282:
Subtomogram average of T4SS of Coxiella burnetii at pH 7
Method: subtomogram averaging / : Kaplan M, Shepherd DC, Vankadari N, Kim KW, Larson CL, Przemyslaw D, Beare PA, Krzymowski E, Heinzen RA, Jensen GJ, Ghosal D

EMDB-28283:
Subtomogram average of T4SS of Coxiella burnetii at pH7 with an inner membrane mask
Method: subtomogram averaging / : Kaplan M, Shepherd DC, Vankadari N, Kim KW, Larson CL, Przemyslaw D, Beare PA, Krzymowski E, Heinzen RA, Jensen GJ, Ghosal D

EMDB-34530:
Membrane protein A
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE

EMDB-34531:
Membrane protein B
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE

EMDB-35713:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 H225F mutant in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Nakamura S, Yamashita K, Fukuda M, Deisseroth K, Kato HE

PDB-8h86:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE

PDB-8h87:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR2 in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE

PDB-8iu0:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 H225F mutant in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Nakamura S, Yamashita K, Fukuda M, Deisseroth K, Kato HE

EMDB-34350:
Legionella pneumophila Deubiquitinase, LotA(7-544) apo state
Method: single particle / : Kang SW, Kim GH, Roh SH, Shin DH

EMDB-25804:
Cryo-EM structure of methane monooxygenase hydroxylase (by quantifoil)
Method: single particle / : Cho US, Kim BC

EMDB-25805:
Cryo-EM structure of methane monooxygenase hydroxylase (by graphene)
Method: single particle / : Cho US, Kim BC

PDB-7tc7:
Cryo-EM structure of methane monooxygenase hydroxylase (by quantifoil)
Method: single particle / : Cho US, Kim BC

PDB-7tc8:
Cryo-EM structure of methane monooxygenase hydroxylase (by graphene)
Method: single particle / : Cho US, Kim BC

EMDB-24822:
20S proteasome from red blood cell lysate
Method: single particle / : Verbeke EJ, Taylor DW

EMDB-26216:
Methylococcus capsulatus methane monooxygenase hydroxylase (MMOH) using the plasma-jet treated grid
Method: single particle / : Ahn E, Kim B, Cho US

EMDB-10793:
Cryo-EM structure of the Full-length disease type human Huntingtin
Method: single particle / : Jung T, Tamo G, Dal Perraro M, Hebert H, Song J

PDB-6yej:
Cryo-EM structure of the Full-length disease type human Huntingtin
Method: single particle / : Tame G, Jung T, Dal Perraro M, Hebert H, Song J

EMDB-30323:
Cryo-EM structure of human GABA(B) receptor bound to the positive allosteric modulator rac-BHFF
Method: single particle / : Kim Y, Jeong E, Jeong J, Cho Y

EMDB-30324:
Cryo-EM structure of human GABA(B) receptor in apo state
Method: single particle / : Kim Y, Jeong E

EMDB-30472:
Cryo-EM structure of human GABA(B) receptor bound to the antagonist CGP54626
Method: single particle / : Kim Y, Jeong E, Jeong J, Cho Y

PDB-7ca3:
Cryo-EM structure of human GABA(B) receptor bound to the positive allosteric modulator rac-BHFF
Method: single particle / : Kim Y, Jeong E, Jeong J, Kim Y, Cho Y

PDB-7ca5:
Cryo-EM structure of human GABA(B) receptor in apo state
Method: single particle / : Kim Y, Jeong E, Jeong J, Kim Y, Cho Y

PDB-7cum:
Cryo-EM structure of human GABA(B) receptor bound to the antagonist CGP54626
Method: single particle / : Kim Y, Jeong E, Jeong J, Kim Y, Cho Y

EMDB-21685:
Structure of human GABA(B) receptor in an inactive state
Method: single particle / : Park J, Fu Z, Frangaj A, Liu J, Mosyak L, Shen T, Slavkovich VN, Ray KM, Taura J, Cao B, Geng Y, Zuo H, Kou Y, Grassucci R, Chen S, Liu Z, Lin X, Williams JP, Rice WJ, Eng ET, Huang RK, Soni RK, Kloss B, Yu Z, Javitch JA, Hendrickson WA, Slesinger PA, Quick M, Graziano J, Yu H, Fiehn O, Clarke OB, Frank J, Fan QR

PDB-6wiv:
Structure of human GABA(B) receptor in an inactive state
Method: single particle / : Park J, Fu Z, Frangaj A, Liu J, Mosyak L, Shen T, Slavkovich VN, Ray KM, Taura J, Cao B, Geng Y, Zuo H, Kou Y, Grassucci R, Chen S, Liu Z, Lin X, Williams JP, Rice WJ, Eng ET, Huang RK, Soni RK, Kloss B, Yu Z, Javitch JA, Hendrickson WA, Slesinger PA, Quick M, Graziano J, Yu H, Fiehn O, Clarke OB, Frank J, Fan QR

EMDB-30220:
AdhE spirosome in extended conformation
Method: single particle / : Kim GJ, Song JJ

EMDB-4937:
Cryo-EM 3D map of normal Huntingtin
Method: single particle / : Jung T, Tamo G, Dal Perraro M, Hebert H, Song J

EMDB-4944:
Cryo-EM 3D map of the N-terminal GFP tagged normal type Huntingtin
Method: single particle / : Jung T, Tamo G, Dal Perraro M, Hebert H, Song J

PDB-6rmh:
The Rigid-body refined model of the normal Huntingtin.
Method: single particle / : Jung T, Tamo G, Dal Perraro M, Hebert H, Song J

EMDB-0896:
High resolution structure of FANCA C-terminal domain (CTD)
Method: single particle / : Jeong E, Lee S

EMDB-0899:
High resolution structure of FANCA C-terminal domain (CTD)
Method: single particle / : Jeong E, Lee S

EMDB-0900:
Structure of FANCA and FANCG Complex
Method: single particle / : Jeong E, Lee S

EMDB-0901:
Structure of N-terminal and C-terminal domains of FANCA
Method: single particle / : Jeong E, Lee S

PDB-6lhs:
High resolution structure of FANCA C-terminal domain (CTD)
Method: single particle / : Jeong E, Lee S, Shin J, Kim Y, Scharer O, Kim Y, Kim H, Cho Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlc1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more