[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 934 items for (author: jan & yn)

EMDB-46884:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-46914:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dhw:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dim:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-52218:
Porphyromonas gingivalis BAM complex
Method: single particle / : Madej M, Silale A, van den Berg B

PDB-9hjm:
Porphyromonas gingivalis BAM complex
Method: single particle / : Madej M, Silale A, van den Berg B

EMDB-54254:
Structure of 70S ribosome-EF-G(P610L)-GDP-Pi-apramycin complex with tRNAs in hybrid state 2 (H2- EF-G(P610L)-GDP-Pi)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

PDB-9rtv:
Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-47447:
Glucagon Like Peptide Receptor-1 (GLP1R) A316T mutant with GLP-1 peptide. Dominant negative Gs complex.
Method: single particle / : Deane-Alder K, Belousoff MJ, Wootten DL

EMDB-54253:
Structure of 70S ribosome-EF-G(P610L)-GDP-Pi-apramycin complex with tRNAs in hybrid state 1 (H1- EF-G(P610L)-GDP-Pi)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-55123:
Structure of 70S ribosome-apramycin complex with tRNAs in classic state (C)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-55124:
Structure of 70S ribosome-apramycin complex with tRNAs in hybrid state 1 (H1)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-55125:
Structure of 70S ribosome-apramycin complex with tRNAs in hybrid state 2 (H2)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

PDB-9rtu:
Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-45301:
mouse Seipin/Adig complex
Method: single particle / : Li C, Han Y, Wynn RM, Chen Z, Scherer PE

EMDB-45302:
mouse Seipin complex
Method: single particle / : Li C, Han Y, Wynn RM, Chen Z, Scherer PE

PDB-9c8d:
mouse Seipin/Adig complex
Method: single particle / : Li C, Han Y, Wynn RM, Chen Z, Scherer PE

PDB-9c8e:
mouse Seipin complex
Method: single particle / : Li C, Han Y, Wynn RM, Chen Z, Scherer PE

EMDB-52200:
Extracellular components BamHIJK of the Bacteroides thetaiotaomicron BAM machinery
Method: single particle / : Silale A, van den Berg B

EMDB-52202:
BamADG components of the Bacteroides thetaiotaomicron BAM machinery
Method: single particle / : Silale A, van den Berg B

EMDB-52209:
Bacteroides thetaiotaomicron BAM complex
Method: single particle / : Silale A, van den Berg B

EMDB-52219:
Porphyromonas gingivalis BAM complex with periplasmic density
Method: single particle / : Madej M, Silale A, van den Berg B

PDB-9his:
Extracellular components BamHIJK of the Bacteroides thetaiotaomicron BAM machinery
Method: single particle / : Silale A, van den Berg B

PDB-9hiv:
BamADG components of the Bacteroides thetaiotaomicron BAM machinery
Method: single particle / : Silale A, van den Berg B

PDB-9hj3:
Bacteroides thetaiotaomicron BAM complex
Method: single particle / : Silale A, van den Berg B

EMDB-63903:
FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis
Method: single particle / : Liu P, Luo D

EMDB-63933:
FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis
Method: single particle / : Liu P, Luo D

PDB-9u6e:
FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis
Method: single particle / : Liu P, Luo D

PDB-9u7a:
FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis
Method: single particle / : Liu P, Luo D

EMDB-48650:
Structure of HKU5 spike C-terminal domain in complex with ACE2 from Pipistrellus abramus
Method: single particle / : Li N, Tsybovsky Y, Teng I, Zhou T

PDB-9mv0:
Structure of HKU5 spike C-terminal domain in complex with ACE2 from Pipistrellus abramus
Method: single particle / : Li N, Tsybovsky Y, Teng I, Zhou T

EMDB-61258:
High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to E-tRNA (consensus map)
Method: single particle / : Yan XF, Gao YG

EMDB-61259:
High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to E-tRNA (Large Ribosomal Subunit)
Method: single particle / : Yan XF, Gao YG

EMDB-61260:
High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to E-tRNA (Small Ribosomal Subunit Body)
Method: single particle / : Yan XF, Gao YG

EMDB-61261:
High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to E-tRNA (Small Ribosomal Subunit Head)
Method: single particle / : Yan XF, Gao YG

EMDB-61262:
High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to RACK1 and E-tRNA (consensus map)
Method: single particle / : Yan XF, Gao YG

EMDB-61263:
High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to RACK1 and E-tRNA (Large Ribosomal Subunit)
Method: single particle / : Yan XF, Gao YG

EMDB-61264:
High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to RACK1 and E-tRNA (Small Ribosomal Subunit Body)
Method: single particle / : Yan XF, Gao YG

EMDB-61265:
High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to RACK1 and E-tRNA (Small Ribosomal Subunit Head)
Method: single particle / : Yan XF, Gao YG

EMDB-61272:
High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to RACK1 and E-tRNA
Method: single particle / : Yan XF, Gao YG

EMDB-61273:
High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to E-tRNA
Method: single particle / : Yan XF, Gao YG

EMDB-61274:
Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to RACK1 and E-tRNA
Method: single particle / : Yan XF, Gao YG

EMDB-61275:
Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to E-tRNA
Method: single particle / : Yan XF, Gao YG

PDB-9j9h:
High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to RACK1 and E-tRNA
Method: single particle / : Yan XF, Gao YG

PDB-9j9i:
High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to E-tRNA
Method: single particle / : Yan XF, Gao YG

EMDB-46604:
BG505 DS-SOSIP.664 apo structure from the CH103 KN cryo-EM dataset
Method: single particle / : Parsons RJ, Acharya P

EMDB-46605:
Cryo-EM structure of BG505 DS-SOSIP.664 with 1 CH103 KN Fab bound
Method: single particle / : Parsons RJ, Acharya P

EMDB-46606:
Cryo-EM structure of BG505 DS-SOSIP.664 with 2 CH103 KN Fabs bound
Method: single particle / : Parsons RJ, Acharya P

EMDB-46613:
Cryo-EM structure of BG505 DS-SOSIP.664 with 1 CH103 Fab bound
Method: single particle / : Parsons RJ, Acharya P

EMDB-46614:
Cryo-EM structure of BG505 DS-SOSIP.664 with 2 CH103 Fabs bound
Method: single particle / : Parsons RJ, Acharya P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more