[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database
Q: What is the data source of EM Navigator?
Latest entriesEMDB:
PDB:
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Displayentries / page
Entry
Article
Sample
Experiment
Processing

Yorodumi Search

-
Search result

Showing 1 - 50 of 189 items for author: j. & lin

PDB-5w9h:
MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4
Method: single particle / : Pallesen J, Ward AB

PDB-5w9i:
MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4
Method: single particle / : Pallesen J, Ward AB

PDB-5w9j:
MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4
Method: single particle / : Pallesen J, Ward AB

PDB-5w9k:
MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4
Method: single particle / : Pallesen J, Ward AB

PDB-5w9l:
MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4
Method: single particle / : Pallesen J, Ward AB

PDB-5w9m:
MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4
Method: single particle / : Pallesen J, Ward AB

PDB-5w9n:
MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4
Method: single particle / : Pallesen J, Ward AB

PDB-5w9o:
MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4
Method: single particle / : Pallesen J, Ward AB

PDB-5w9p:
MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4
Method: single particle / : Pallesen J, Ward AB

PDB-6alf:
CryoEM structure of crosslinked E.coli RNA polymerase elongation complex
Method: single particle / : Kang JY, Darst SA

PDB-6alg:
CryoEM structure of HK022 Nun - E.coli RNA polymerase elongation complex
Method: single particle / : Kang JY, Darst SA

PDB-6alh:
CryoEM structure of E.coli RNA polymerase elongation complex
Method: single particle / : Kang JY, Darst SA

PDB-5xsy:
Structure of the Nav1.4-beta1 complex from electric eel
Method: single particle / : Yan Z, Zhou Q, Wu JP, Yan N

PDB-5oac:
FLiP major capsid protein
Method: single particle / : De Colibus L, Stuart DI, Huiskonen JT

PDB-5vy9:
S. cerevisiae Hsp104:casein complex, Middle Domain Conformation
Method: single particle / : Gates SN, Yokom AL, Lin JB, Jackrel ME, Rizo AN, Kendsersky NM, Buell CE, Sweeny EA, Chuang E, Torrente MP, Mack KL, Su M, Shorter J, Southworth DR

PDB-5vjh:
Closed State CryoEM Reconstruction of Hsp104:ATPyS and FITC casein
Method: single particle / : Gates SN, Yokom AL, Lin JB, Jackrel ME, Rizo AN, Kendsersky NM, Buell CE, Sweeny EA, Chuang E, Torrente MP, Mack KL, Su M, Shorter J, Southworth DR

PDB-5vy8:
S. cerevisiae Hsp104-ADP complex
Method: single particle / : Gates SN, Yokom AL, Lin JB, Jackrel ME, Rizo AN, Kendsersky NM, Buell CE, Sweeny EA, Chuang E, Torrente MP, Mack KL, Su M, Shorter J, Southworth DR

PDB-5vya:
S. cerevisiae Hsp104:casein complex, Extended Conformation
Method: single particle / : Gates SN, Yokom AL, Lin JB, Jackrel ME, Rizo AN, Kendsersky NM, Buell CE, Sweeny EA, Chuang E, Torrente MP, Mack KL, Su M, Shorter J, Southworth DR

PDB-5xjc:
Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom
Method: single particle / : Zhang X, Yan C, Hang J, Finci IL, Lei J, Shi Y

PDB-5nzr:
The structure of the COPI coat leaf
Method: subtomogram averaging / : Dodonova SO, Aderhold P, Kopp J, Ganeva I, Roehling S, Hagen WJH, Sinning I, Wieland F, Briggs JAG

PDB-5nzs:
The structure of the COPI coat leaf in complex with the ArfGAP2 uncoating factor
Method: subtomogram averaging / : Dodonova SO, Aderhold P, Kopp J, Ganeva I, Roehling S, Hagen WJH, Sinning I, Wieland F, Briggs JAG

PDB-5nzt:
The structure of the COPI coat linkage I
Method: subtomogram averaging / : Dodonova SO, Aderhold P, Kopp J, Ganeva I, Roehling S, Hagen WJH, Sinning I, Wieland F, Briggs JAG

PDB-5nzu:
The structure of the COPI coat linkage II
Method: subtomogram averaging / : Dodonova SO, Aderhold P, Kopp J, Ganeva I, Roehling S, Hagen WJH, Sinning I, Wieland F, Briggs JAG

PDB-5nzv:
The structure of the COPI coat linkage IV
Method: subtomogram averaging / : Dodonova SO, Aderhold P, Kopp J, Ganeva I, Roehling S, Hagen WJH, Sinning I, Wieland F, Briggs JAG

PDB-5nl2:
cryo-EM structure of the mTMEM16A ion channel at 6.6 A resolution.
Method: single particle / : Paulino C, Neldner Y, Lam KM, Kalienkova V, Brunner JD, Schenck S, Dutzler R

PDB-5uf6:
The 2.8 A Electron Microscopy Structure of Adeno-Associated Virus-DJ Bound by a Heparanoid Pentasaccharide
Method: single particle / : Xie Q, Spear JM, Noble AJ, Sousa DR, Meyer NL, Davulcu O, Zhang F, Linhardt RJ, Stagg SM, Chapman M

PDB-5v8f:
Structural basis of MCM2-7 replicative helicase loading by ORC-Cdc6 and Cdt1
Method: single particle / : Yuan Z, Riera A, Bai L, Sun J, Spanos C, Chen ZA, Barbon M, Rappsilber J, Stillman B, Speck C, Li H

PDB-5uz9:
Cryo EM structure of anti-CRISPRs, AcrF1 and AcrF2, bound to type I-F crRNA-guided CRISPR surveillance complex
Method: single particle / : Chowdhury S, Carter J, Rollins MF, Jackson RN, Hoffmann C, Nosaka L, Bondy-Denomy J, Maxwell KL, Davidson AR, Fischer ER, Lander GC, Wiedenheft B

PDB-5gpn:
Architecture of mammalian respirasome
Method: single particle / : Gu J, Wu M, Guo R, Yang M

PDB-5nbz:
Wzz dodecamer fitted by MDFF to the Wzz experimental map from cryo-EM
Method: single particle / : Ford RC, Kargas V, Collins RF, Whitfield C, Clarke BR, Siebert A, Bond PJ, Clare DK

PDB-5n8y:
KaiCBA circadian clock backbone model based on a Cryo-EM density
Method: single particle / : Schuller JM, Snijder J, Loessl P, Heck AJR, Foerster F

PDB-5tjt:
T5 bacteriophage major capsid protein - one PB8 hexon
Method: single particle / : Conway J, Huet A

PDB-5udb:
Structural basis of MCM2-7 replicative helicase loading by ORC-Cdc6 and Cdt1
Method: single particle / : Yuan Z, Riera A, Bai L, Sun J, Spanos C, Chen ZA, Barbon M, Rappsilber J, Stillman B, Speck C, Li H

PDB-5mw1:
cryoEM structure of crenactin double helical filament at 3.8A resolution
Method: helical / : Izore T, Lowe J

PDB-5u8t:
Structure of Eukaryotic CMG Helicase at a Replication Fork and Implications
Method: single particle / : Li B, Georgescu R, Yuan Z, Santos R, Sun J, Zhang D, Yurieva O, Li H, O'Donnell ME

PDB-5ujm:
Structure of the active form of human Origin Recognition Complex and its ATPase motor module
Method: single particle / : Tocilj A, On K, Yuan Z, Sun J, Elkayam E, Li H, Stillman B, Joshua-Tor L

PDB-5h0r:
RNA dependent RNA polymerase ,vp4,dsRNA
Method: single particle / : Li X, Zhou N, Chen W, Zhu B, Wang X, Xu B, Wang J, Liu H, Cheng L

PDB-5h0s:
EM Structure of VP1A and VP1B
Method: single particle / : Li X, Zhou N, Xu B, Chen W, Zhu B, Wang X, Wang J, Liu H, Cheng L

PDB-5h4p:
Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
Method: single particle / : Ma C, Wu S, Li N, Chen Y, Yan K, Li Z, Zheng L, Lei J, Woolford JL, Gao N

PDB-5twv:
Cryo-EM structure of the pancreatic ATP-sensitive K+ channel SUR1/Kir6.2 in the presence of ATP and glibenclamide
Method: single particle / : Martin GM, Yoshioka C, Chen JZ, Shyng SL

PDB-5u8s:
Structure of eukaryotic CMG helicase at a replication fork
Method: single particle / : Li H, Li B, Georgescu R, Yuan Z, Santos R, Sun J, Zhang D, Yurieva O, O'Donnell ME

PDB-5wte:
Cryo-EM structure for Hepatitis A virus full particle
Method: single particle / : Wang X, Zhu L, Dang M, Hu Z, Gao Q, Yuan S, Sun Y, Zhang B, Ren J, Walter TS, Wang J, Fry EE, Stuart DI, Rao Z

PDB-5wtf:
Cryo-EM structure for Hepatitis A virus empty particle
Method: single particle / : Wang X, Zhu L, Dang M, Hu Z, Gao Q, Yuan S, Sun Y, Zhang B, Ren J, Walter TS, Wang J, Fry EE, Stuart DI, Rao Z

PDB-5wth:
Cryo-EM structure for Hepatitis A virus complexed with FAB
Method: single particle / : Wang X, Zhu L, Dang M, Hu Z, Gao Q, Yuan S, Sun Y, Zhang B, Ren J, Walter TS, Wang J, Fry EE, Stuart DI, Rao Z

PDB-5m6s:
folding intermediate of spectrin R16
Method: single particle / : Nilsson OB, Nickson AA, Clarke J

PDB-5h1b:
Human RAD51 presynaptic complex
Method: helical / : Xu J, Zhao L, Xu Y, Zhao W, Sung P, Wang HW

PDB-5h1c:
Human RAD51 post-synaptic complexes
Method: helical / : Xu J, Zhao L, Xu Y, Zhao W, Sung P, Wang HW

PDB-5knz:
Human Islet Amyloid Polypeptide Segment 19-SGNNFGAILSS-29 with Early Onset S20G Mutation Determined by MicroED
Method: electron crystallography / : Krotee PAL, Rodriguez JA, Sawaya MR, Cascio D, Shi D, Nannenga BL, Hattne J, Reyes FE, Gonen T, Eisenberg DS

PDB-5ko0:
Human Islet Amyloid Polypeptide Segment 15-FLVHSSNNFGA-25 Determined by MicroED
Method: electron crystallography / : Krotee PAL, Rodriguez JA, Sawaya MR, Cascio D, Shi D, Nannenga BL, Hattne J, Reyes FE, Gonen T, Eisenberg DS

PDB-5tzs:
Architecture of the yeast small subunit processome
Method: single particle / : Chaker-Margot M, Barandun J, Hunziker M, Klinge S

Pages:

+
About EMN search

-
News

-
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

+
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

Read more

-
EMN Search

3DEM data search

  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

Read more