[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,897 items for (author: ito & y)

EMDB-62853:
Glycogen phosphorylase from Segatella copri
Method: single particle / : Shobu K, Fukuda Y, Inoue T

EMDB-63736:
Glycogen phosphorylase dimer from E. coli
Method: single particle / : Takai M, Fukuda Y, Inoue T

EMDB-63749:
Glycogen phosphorylase from Segatella copri bound to glycogen-chain A and E
Method: single particle / : Shobu K, Fukuda Y, Inoue T

EMDB-63814:
Glycogen phosphorylase from Segatella copri in complex with AMP
Method: single particle / : Shobu K, Fukuda Y, Inoue T

EMDB-63816:
Glycogen phosphorylase from Segatella copri pentamer in complex with AMP chains D and E
Method: single particle / : Shobu K, Fukuda Y, Inoue T

EMDB-64491:
Glycogen phosphorylase from Segatella copri decamer in complex with AMP
Method: single particle / : Shobu K, Fukuda Y, Inoue T

EMDB-64514:
Glycogen phosphorylase from Segatella copri bound to glycogen-pentamer
Method: single particle / : Shobu K, Fukuda Y, Inoue T

EMDB-64926:
Cryo-EM structure of glycogen phosphorylase from Dorea longicatena (monomer form)
Method: single particle / : Takai M, Tanino H, Shobu K, Fukuda Y, Inoue T

EMDB-64927:
Cryo-EM structure of glycogen phosphorylase from Dorea longicatena (dimer form)
Method: single particle / : Takai M, Tanino H, Shobu K, Fukuda Y, Inoue T

EMDB-64931:
Cryo-EM map of glycogen phosphorylase from Dorea longicatena (monomer form with extra density)
Method: single particle / : Takai M, Tanino H, Shobu K, Fukuda Y, Inoue T

EMDB-65042:
Glycogen phosphorylase dimer from E. coli in complex with glycogen
Method: single particle / : Takai M, Fukuda Y, Inoue T

EMDB-67417:
R583A mutant of glycogen phosphorylase from Segatella copri
Method: single particle / : Takai M, Fukuda Y

EMDB-67418:
R583A mutant of glycogen phosphorylase from Segatella copri in the presence of AMP
Method: single particle / : Takai M, Fukuda Y

EMDB-53311:
Cryo-EM map of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-53341:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-55145:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qqq:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qsj:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9sro:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-68389:
P301L/S320F human tau filaments from mouse brain
Method: single particle / : Yanagisawa H, Kano M, Kimura T, Kikkawa M, Tomita T

EMDB-73766:
Mitochondrial Creatine Kinase in complex with ADP, creatine, and uncompetitive inhibitor uci
Method: single particle / : Demir M, Zhao J, Sergienko E

EMDB-73767:
Mitochondrial Creatine Kinase in complex with ADP and uncompetitive inhibitor uci
Method: single particle / : Demir M, Zhao J, Sergienko E

PDB-9z2d:
Mitochondrial Creatine Kinase in complex with ADP, creatine, and uncompetitive inhibitor uci
Method: single particle / : Demir M, Zhao J, Sergienko E

PDB-9z2f:
Mitochondrial Creatine Kinase in complex with ADP and uncompetitive inhibitor uci
Method: single particle / : Demir M, Zhao J, Sergienko E

EMDB-65385:
cryo-EM structure of gastric proton pump bound to YK01
Method: single particle / : Saito H, Abe K

PDB-9vvo:
cryo-EM structure of gastric proton pump bound to YK01
Method: single particle / : Saito H, Abe K

EMDB-67107:
Cryo-EM structure of the human A2A adenosine receptor in complex with a Fab antibody fragment
Method: single particle / : Miyashita Y, Konno R, Ogasawara S, Okuda Y, Takamuku Y, Moriya T, Saito T, Murata T, Ohara O, Kawashima Y

PDB-9xqb:
Cryo-EM structure of the human A2A adenosine receptor in complex with a Fab antibody fragment
Method: single particle / : Miyashita Y, Konno R, Ogasawara S, Okuda Y, Takamuku Y, Moriya T, Saito T, Murata T, Ohara O, Kawashima Y

EMDB-63452:
Cryo-EM structure of the cytosolic ARMH2-EFCAB9-CATSPERz subcomplex of the mouse CatSpermasome
Method: single particle / : Zhao Q, Lin S, Xu Q, Wu J

PDB-9lwo:
Cryo-EM structure of the cytosolic ARMH2-EFCAB9-CATSPERz subcomplex of the mouse CatSpermasome
Method: single particle / : Zhao Q, Lin S, Xu Q, Wu J

EMDB-66103:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, type B)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-66104:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, type A)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-66105:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp130, type A)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-66106:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp130, type B)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-66107:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, FACT-hexamer)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

PDB-9wms:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, type B)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

PDB-9wmt:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, type A)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

PDB-9wmu:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp130, type A)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

PDB-9wmv:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp130, type B)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

PDB-9wmw:
Co-transcriptional histone H3K36 methylation complex containing RNA polymerase II elongation complex, Set2, and the upstream nucleosome. (temp115, FACT-hexamer)
Method: single particle / : Kujirai T, Ehara H, Ito T, Henmi M, Sekine S, Kurumizaka H

EMDB-65715:
Cryo-EM map of the nucleosome reconstituted in E. coli cells
Method: single particle / : Ho CH, Takizawa Y, Kurumizaka H

EMDB-65716:
Cryo-EM structure of the close-packed di-hexasome (CPDH)
Method: single particle / : Ho CH, Takizawa Y, Kurumizaka H

PDB-9w74:
Cryo-EM structure of the close-packed di-hexasome (CPDH)
Method: single particle / : Ho CH, Takizawa Y, Kurumizaka H

EMDB-62386:
Structure of the human 40S ribosome complexed with HCV IRES and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62453:
Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62454:
Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62535:
Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62671:
Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62679:
Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9kkf:
Structure of the human 40S ribosome complexed with HCV IRES and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more