[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 342 items for (author: ishikawa & i)

EMDB-60321:
3D structure of Y-50 TCR-TMM-CD1b ternary complex
Method: single particle / : Asa M, Hirose M, Nagae M, Yamasaki S, Kato T

PDB-8zox:
3D structure of Y-50 TCR-TMM-CD1b ternary complex
Method: single particle / : Asa M, Hirose M, Nagae M, Yamasaki S, Kato T

EMDB-60580:
Bacterial flagellar sodium-driven stator PomA5PomB2 with 100 mM NaCl
Method: single particle / : Nishikino T, Kishikawa J, Hirose M, Kato T, Imada K

EMDB-60581:
Bacterial flagellar sodium-driven stator PomA5PomB2 with 100 mM KCl
Method: single particle / : Nishikino T, Kishikawa J, Hirose M, Kato T, Imada K

EMDB-60584:
Bacterial flagellar sodium-driven stator PomA5PomB2(D24N) with 100 mM NaCl
Method: single particle / : Nishikino T, Kishikiwa J, Hirose M, Kato T, Imada K

EMDB-60585:
Bacterial flagellar sodium-driven stator PomA5PomB2(D24N) with 100 mM KCl
Method: single particle / : Nishikino T, Kishikawa J, Hirose M, Kato T, Imada K

EMDB-60636:
Bacterial flagellar sodium-driven stator PomA5PomB2 with 100 mM NaCl and 0.1 mM phenamil
Method: single particle / : Nishikino T, Kishikawa J, Hirose M, Kato T, Imada K

EMDB-61031:
Cryo-EM structure of LPA1-Gi complex with LPA
Method: single particle / : Suzuki S, Nishikawa K, Kamegawa A, Hiroaki Y, Suzuki H, Fujiyoshi Y

EMDB-61032:
Cryo-EM structure of LPA1-Gq complex with LPA
Method: single particle / : Suzuki S, Nishikawa K, Kmegawa A, Hiroaki Y, Suzuki H, Fujiyoshi Y

EMDB-61033:
Cryo-EM structure of LPA1-G13 complex with LPA
Method: single particle / : Suzuki S, Nishikawa K, Kamegawa A, Hiroaki Y, Suzuki H, Fujiyoshi Y

PDB-9izf:
Cryo-EM structure of LPA1-Gi complex with LPA
Method: single particle / : Suzuki S, Nishikawa K, Kamegawa A, Hiroaki Y, Suzuki H, Fujiyoshi Y

PDB-9izg:
Cryo-EM structure of LPA1-Gq complex with LPA
Method: single particle / : Suzuki S, Nishikawa K, Kmegawa A, Hiroaki Y, Suzuki H, Fujiyoshi Y

PDB-9izh:
Cryo-EM structure of LPA1-G13 complex with LPA
Method: single particle / : Suzuki S, Nishikawa K, Kamegawa A, Hiroaki Y, Suzuki H, Fujiyoshi Y

EMDB-45764:
CryoEM structure of the APO-BAM complex in DDM detergent
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-45765:
CryoEM structure of BAM in complex with the PTB1 closed-state inhibitor (in DDM detergent)
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-45766:
CryoEM structure of the APO-BAM complex in SMA nanodisc
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-45767:
Structure of BAM complexed with PTB2 ligand in detergent
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-45768:
CryoEM structure of BAM in complex with the PTB2 open-state inhibitor (in SMA nanodisc)
Method: single particle / : Sun D, Tegunov D, Payandeh J

PDB-9cnw:
CryoEM structure of the APO-BAM complex in DDM detergent
Method: single particle / : Sun D, Tegunov D, Payandeh J

PDB-9cnx:
CryoEM structure of BAM in complex with the PTB1 closed-state inhibitor (in DDM detergent)
Method: single particle / : Sun D, Tegunov D, Payandeh J

PDB-9cny:
CryoEM structure of the APO-BAM complex in SMA nanodisc
Method: single particle / : Sun D, Tegunov D, Payandeh J

PDB-9cnz:
Structure of BAM complexed with PTB2 ligand in detergent
Method: single particle / : Sun D, Tegunov D, Payandeh J

PDB-9co0:
CryoEM structure of BAM in complex with the PTB2 open-state inhibitor (in SMA nanodisc)
Method: single particle / : Sun D, Tegunov D, Payandeh J

EMDB-61095:
Structure of photosynthetic LH1-RC complex from the purple bacterium Blastochloris tepida
Method: single particle / : Kimura Y, Kanno R, Mori K, Matsuda Y, Seto R, Takenaka S, Mino H, Ohkubo T, Honda M, Sasaki YC, Kishikawa J, Mitsuoka K, Mio K, Hall M, Purba ER, Mochizuki T, Mizoguchi A, Humbel BM, Madigan MT, Wang-Otomo ZY, Tani K

PDB-9j2f:
Structure of photosynthetic LH1-RC complex from the purple bacterium Blastochloris tepida
Method: single particle / : Kimura Y, Kanno R, Mori K, Matsuda Y, Seto R, Takenaka S, Mino H, Ohkubo T, Honda M, Sasaki YC, Kishikawa J, Mitsuoka K, Mio K, Hall M, Purba ER, Mochizuki T, Mizoguchi A, Humbel BM, Madigan MT, Wang-Otomo ZY, Tani K

EMDB-39644:
The isolated Vo domain of V/A-ATPase from Thermus thermophilus.
Method: single particle / : Kishikawa J, Nishida Y, Nakano A, Yokoyama K

EMDB-39661:
Vo domain of V/A-ATPase from Thermus thermophilus state1
Method: single particle / : Kishikawa J, Nishida Y, Nakano A, Yokoyama K

EMDB-39662:
Vo domain of V/A-ATPase from Thermus thermophilus state2
Method: single particle / : Kishikawa J, Nishida Y, Nakano A, Yokoyama K

EMDB-39663:
Vo domain of V/A-ATPase from Thermus thermophilus state3
Method: single particle / : Nishida Y, Kishikawa J, Nakano A, Yokoyama K

PDB-8ywt:
The isolated Vo domain of V/A-ATPase from Thermus thermophilus.
Method: single particle / : Kishikawa J, Nishida Y, Nakano A, Yokoyama K

PDB-8yxz:
Vo domain of V/A-ATPase from Thermus thermophilus state1
Method: single particle / : Kishikawa J, Nishida Y, Nakano A, Yokoyama K

PDB-8yy0:
Vo domain of V/A-ATPase from Thermus thermophilus state2
Method: single particle / : Kishikawa J, Nishida Y, Nakano A, Yokoyama K

PDB-8yy1:
Vo domain of V/A-ATPase from Thermus thermophilus state3
Method: single particle / : Nishida Y, Kishikawa J, Nakano A, Yokoyama K

EMDB-37774:
Transporter apo state
Method: single particle / : Im D, Iwata S

EMDB-37775:
Transporter bound with dopamine
Method: single particle / : Im D, Iwata S

EMDB-37867:
Transporter bound with inhibitor
Method: single particle / : Im D, Iwata S

PDB-8wrd:
Transporter apo state
Method: single particle / : Im D, Iwata S

PDB-8wre:
Transporter bound with dopamine
Method: single particle / : Im D, Iwata S

PDB-8wvg:
Transporter bound with inhibitor
Method: single particle / : Im D, Iwata S

EMDB-39761:
Structure of the S-ring region of the Vibrio flagellar MS-ring protein FliF with 34-fold symmetry applied
Method: single particle / : Takekawa N, Nishikino T, Kishikawa J, Hirose M, Kato T, Imada K, Homma M

EMDB-39763:
Structure of the S-ring region of the Vibrio flagellar MS-ring protein FliF with 35-fold symmetry applied
Method: single particle / : Takekawa N, Nishikino T, Kishikawa J, Hirose M, Kato T, Imada K, Homma M

EMDB-39764:
Homomeric 34mer of the Vibrio flagellar MS-ring protein FliF without symmetry imposition
Method: single particle / : Takekawa N, Nishikino T, Kishikawa J, Hirose M, Kato T, Imada K, Homma M

EMDB-39765:
Homomeric 35mer of the Vibrio flagellar MS-ring protein FliF without symmetry imposition
Method: single particle / : Takekawa N, Nishikino T, Kishikawa J, Hirose M, Kato T, Imada K, Homma M

PDB-8z4d:
Structure of the S-ring region of the Vibrio flagellar MS-ring protein FliF with 34-fold symmetry applied
Method: single particle / : Takekawa N, Nishikino T, Kishikawa J, Hirose M, Kato T, Imada K, Homma M

PDB-8z4g:
Structure of the S-ring region of the Vibrio flagellar MS-ring protein FliF with 35-fold symmetry applied
Method: single particle / : Takekawa N, Nishikino T, Kishikawa J, Hirose M, Kato T, Imada K, Homma M

EMDB-36635:
Structure of arginine oxidase from Pseudomonas sp. TRU 7192
Method: single particle / : Yamaguchi H, Numoto N, Suzuki H, Nishikawa K, Kamegawa A, Takahashi K, Sugiki M, Fujiyoshi Y

PDB-8jt7:
Structure of arginine oxidase from Pseudomonas sp. TRU 7192
Method: single particle / : Yamaguchi H, Numoto N, Suzuki H, Nishikawa K, Kamegawa A, Takahashi K, Sugiki M, Fujiyoshi Y

EMDB-35029:
SARS-CoV2 spike protein with ACE2, no ACE2 binding.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-35030:
SARS-CoV2 spike protein with ACE2. 1 ACE2 bound form.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-35031:
SARS-CoV2 spike protein with ACE2. 2 ACE2 bound form.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more