[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 95 items for (author: hung & nk)

EMDB-59026:
Cryo-EM structure of SKM-M.smegmatis 70S ribosomal complex
Method: single particle / : Cook MA, Xu M, Morici M, Travin DT, Wang W, Klepacki D, Nandini N, Rao VN, Sahile H, Hackenberger D, Golas AJ, Nietupski RM, Fitzgerald M, Safdari HA, Berger M, Corazza M, Bond A, Ben-Zion I, Guitor AK, Tertigas D, Wang L, Schaenzer AJ, Ejim L, Yarlagadda V, Gomez J, Surette MG, Av-Gay Y, Dhar N, Hung DT, Vazquez Laslop N, Mankin A, Wilson DN, Wright GD

PDB-32nj:
Cryo-EM structure of SKM-M.smegmatis 70S ribosomal complex
Method: single particle / : Cook MA, Xu M, Morici M, Travin DT, Wang W, Klepacki D, Nandini N, Rao VN, Sahile H, Hackenberger D, Golas AJ, Nietupski RM, Fitzgerald M, Safdari HA, Berger M, Corazza M, Bond A, Ben-Zion I, Guitor AK, Tertigas D, Wang L, Schaenzer AJ, Ejim L, Yarlagadda V, Gomez J, Surette MG, Av-Gay Y, Dhar N, Hung DT, Vazquez Laslop N, Mankin A, Wilson DN, Wright GD

EMDB-64749:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 in the Apo state
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64751:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to EP54
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64752:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64761:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a-pep
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64777:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to R8Y
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-65890:
Structure of mC5aR2 in complex with mC5a-desArg
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-80132:
Structure of mC5aR2 in complex with mC5a-desArg (Monomer)
Method: single particle / : Tiwari D, Ganguly M, Banerjee R, Shukla AK, Mishra S, Dalal A, Nureki O

PDB-25if:
Structure of mC5aR2 in complex with mC5a-desArg (Monomer)
Method: single particle / : Tiwari D, Ganguly M, Banerjee R, Shukla AK

PDB-9v35:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 in the Apo state
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9v38:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to EP54
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9v3c:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9v3y:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a-pep
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9v4d:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to R8Y
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9wdi:
Structure of mC5aR2 in complex with mC5a-desArg
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-53311:
Cryo-EM map of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-53341:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-55145:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qqq:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qsj:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9sro:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-63935:
structure of human KCNQ1-KCNE1-CaM complex
Method: single particle / : Hou PP, Zhang J, Wan SY, Cheng XY, Zhong L, Hu B

EMDB-64038:
structure of human KCNQ1-KCNE1-CaM complex with PIP2
Method: single particle / : Hou PP, Zhang J, Wan SY, Cheng XY, Zhong L, Hu B

PDB-9u7f:
structure of human KCNQ1-KCNE1-CaM complex
Method: single particle / : Hou PP, Zhang J, Wan SY, Cheng XY, Zhong L, Hu B

PDB-9uc8:
structure of human KCNQ1-KCNE1-CaM complex with PIP2
Method: single particle / : Hou PP, Zhang J, Wan SY, Cheng XY, Zhong L, Hu B

EMDB-47031:
Insulin receptor bound with de novo designed agonist called "RF-405".
Method: single particle / : Bai XC

EMDB-47041:
Insulin receptor bound with de novo designed agonist called "S2-F1-S1"
Method: single particle / : Bai XC

EMDB-47043:
Insulin receptor in complex with both insulin and de novo designed site-2 binder "S2B".
Method: single particle / : Bai XC

PDB-9dn6:
Insulin receptor bound with de novo designed agonist called "RF-405".
Method: single particle / : Bai XC

PDB-9dni:
Insulin receptor bound with de novo designed agonist called "S2-F1-S1"
Method: single particle / : Bai XC

PDB-9dnn:
Insulin receptor in complex with both insulin and de novo designed site-2 binder "S2B".
Method: single particle / : Bai XC

EMDB-48671:
C6 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gB
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

EMDB-48677:
D1 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gB
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

EMDB-48730:
D7 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gD
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

PDB-9mvu:
C6 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gB
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

PDB-9mw5:
D1 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gB
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

PDB-9my8:
D7 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gD
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

EMDB-46908:
Recombinant AD-fold Paired Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46915:
Recombinant AD-fold Quadruple Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-44591:
Mycobacterium tuberculosis EFPA antiparallel dimer
Method: single particle / : Khandelwal NK, Gupta M, Stroud RM

EMDB-44594:
BRD-8000.3 bound EFPA transporter of Mycobacterium tuberculosis
Method: single particle / : Khandelwal NK, Gupta M, Stroud RM

EMDB-44598:
BRD-9327 bound EFPA transporter of Mycobacterium tuberculosis
Method: single particle / : Khandelwal NK, Gupta M, Stroud RM

EMDB-44651:
Mycobacterium tuberculosis efpA parallel dimer
Method: single particle / : Khandelwal NK, Gupta M, Stroud RM

EMDB-46870:
Recombinant AD PHF
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46885:
AD-fold Tri Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Kunach P, Diamond MI

EMDB-46909:
Recombinant AD-fold Paired Helical Filament II Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46911:
Recombinant AD-fold Triple Helical Filament Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-47092:
Recombinant Truncated Tau 266-391 fibrillized in NaCl Second Polymorph
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

EMDB-46937:
Recombinant Truncated Tau 266-391 fibrillized in NaCl
Method: helical / : Vaquer-Alicea J, Diamond MI, Kunach P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more