[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 924 items for (author: hay & im)

EMDB-71076:
Human liver phosphofructokinase-1 bound to XJ-4-85
Method: single particle / : Lynch EM, Jiang X, Hsu KL, Kollman JM

PDB-9p0j:
Human liver phosphofructokinase-1 bound to XJ-4-85
Method: single particle / : Lynch EM, Jiang X, Hsu KL, Kollman JM

EMDB-74629:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking Fab D02-F2 and hemolysis enhancing Fab D02-E4
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

EMDB-74630:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking antibody fragment D13r-34
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

PDB-9zrs:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking Fab D02-F2 and hemolysis enhancing Fab D02-E4
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

PDB-9zrt:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking antibody fragment D13r-34
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

EMDB-67995:
Cryo-EM structure of Free fatty acid receptor 2 (FFA2)-ARK1 with GLPG0974
Method: single particle / : Kojima A, Kawakami K, Narita T, Kugawa M, Hayashi K, Fukuda M, Kato HE

PDB-21ty:
Cryo-EM structure of Free fatty acid receptor 2 (FFA2)-ARK1 with GLPG0974
Method: single particle / : Kojima A, Kawakami K, Narita T, Kugawa M, Hayashi K, Fukuda M, Kato HE

EMDB-66671:
Local refinement of SARS-CoV-2 KP.3.1.1 RBD with BD57-2704 and AB2-122 Fab
Method: single particle / : Cao YL, Wang YX

PDB-9x9t:
Local refinement of SARS-CoV-2 KP.3.1.1 RBD with BD57-2704 and AB2-122 Fab
Method: single particle / : Cao YL, Wang YX

EMDB-76291:
Cryo-EM structure of human DDB1-CRBN-GSPT1 in complex with GT19630
Method: single particle / : Huang J, Chu HF, Tong L

PDB-12bp:
Cryo-EM structure of human DDB1-CRBN-GSPT1 in complex with GT19630
Method: single particle / : Huang J, Chu HF, Tong L

EMDB-72277:
Cryo-EM map of Plasmodium falciparum 20S proteasome bound to an asparagine-ethylenediamine based inhibitor TDI6245
Method: single particle / : Hsu HC, Li H

PDB-9q6f:
Structure of Plasmodium falciparum 20S proteasome bound to an asparagine-ethylenediamine based inhibitor TDI6245
Method: single particle / : Hsu HC, Li H

EMDB-73392:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody AB2-122 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Jonaid G, Batra H, Kibria G, Chen B, Alt FW

EMDB-73457:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody S212 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Batra H, Zhang J, Jonaid G, Kibria G, Chen B, Alt FW

PDB-9ysg:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody AB2-122 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Jonaid G, Batra H, Kibria G, Chen B, Alt FW

PDB-9ytc:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody S212 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Batra H, Zhang J, Jonaid G, Kibria G, Chen B, Alt FW

EMDB-72771:
Structure of the Adenovirus-7 PB-Fiber
Method: single particle / : Khayat R, Madoo K

EMDB-72772:
Structure of the Adenovirus-7 VLP, Class 4
Method: single particle / : Khayat R, Madoo K

EMDB-72773:
Structure of the Adenovirus-7 VLP, Class 3
Method: single particle / : Khayat R, Madoo K

EMDB-72774:
Structure of the Adenovirus-7 VLP, Class 2
Method: single particle / : Khayat R, Madoo K

EMDB-72793:
Structure of the Adenovirus-7 VLP, Class 1
Method: single particle / : Khayat R, Madoo K

EMDB-72794:
Structure of the Adenovirus-7 VLP
Method: single particle / : Khayat R, Madoo K

PDB-9ych:
Structure of the Adenovirus-7 VLP, Class 4
Method: single particle / : Khayat R, Madoo K

PDB-9yci:
Structure of the Adenovirus-7 VLP, Class 3
Method: single particle / : Khayat R, Madoo K

PDB-9ycj:
Structure of the Adenovirus-7 VLP, Class 2
Method: single particle / : Khayat R, Madoo K

PDB-9yd0:
Structure of the Adenovirus-7 VLP, Class 1
Method: single particle / : Khayat R, Madoo K

EMDB-72972:
AM12-340 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

PDB-9yhs:
AM12-340 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-74654:
Cryo-EM structure of SHIV-elicited CE79-1571 Fab in complex with HIV Env trimer Q23-SCT27
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-74655:
Cryo-EM structure of SHIV-elicited CN81-2029 Fab in complex with HIV Env trimer Q23-SCT27
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-74656:
Cryo-EM structure of SHIV-elicited CI93-1365 Fab in complex with HIV Env trimer Q23-SCT27
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9zrx:
Cryo-EM structure of SHIV-elicited CE79-1571 Fab in complex with HIV Env trimer Q23-SCT27
Method: single particle / : Roark RS, Shapiro L, Kwong PD

PDB-9zry:
Cryo-EM structure of SHIV-elicited CN81-2029 Fab in complex with HIV Env trimer Q23-SCT27
Method: single particle / : Roark RS, Shapiro L, Kwong PD

PDB-9zrz:
Cryo-EM structure of SHIV-elicited CI93-1365 Fab in complex with HIV Env trimer Q23-SCT27
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-49451:
Cryo-EM structure of the PI3K alpha/KRas complex on POPC/POPS/PIP2 nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-49456:
Cryo-EM structure of the Class 2 PI3K alpha/KRas complex on POPC/POPS nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

PDB-9ni3:
Cryo-EM structure of the PI3K alpha/KRas complex on POPC/POPS/PIP2 nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

PDB-9ni8:
Cryo-EM structure of the Class 2 PI3K alpha/KRas complex on POPC/POPS nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-54010:
Human Signal Peptidase in complex with artificial Signal Peptide L11
Method: single particle / : Liaci AM, Vismpas D, Skalidis I, Koh FA, Abhay K, Forster GF

EMDB-54011:
Apo Structure of the Human Signal Peptidase
Method: single particle / : Liaci AM, Vismpas D, Skalidis I, Koh FA, Abhay K, Forster GF

PDB-9rjb:
Human Signal Peptidase in complex with artificial Signal Peptide L11
Method: single particle / : Liaci AM, Vismpas D, Skalidis I, Koh FA, Abhay K, Forster GF

PDB-9rjc:
Apo Structure of the Human Signal Peptidase
Method: single particle / : Liaci AM, Vismpas D, Skalidis I, Koh FA, Abhay K, Forster GF

EMDB-72969:
AJ09-21 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72970:
AJ09-83 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72971:
AJ09-110 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gavor E, Gristick HB, Bjorkman PJ

EMDB-72973:
AM12-347 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72985:
AM12-351 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

EMDB-72986:
AM12-352 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Method: single particle / : Gristick HB, Gavor E, Bjorkman PJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more