[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 70 items for (author: hamdi & f)

EMDB-54951:
Cryo-EM structure of Human Apoferritin at pH 3.5
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

EMDB-54952:
Cryo-EM structure of Human Apoferritin at pH 4
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

EMDB-54953:
Cryo-EM structure of Human Apoferritin at pH 5
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

EMDB-54954:
Cryo-EM structure of Human Apoferritin at pH 7
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

EMDB-54955:
Cryo-EM structure of Human Apoferritin at pH 9
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

PDB-9sjr:
Cryo-EM structure of Human Apoferritin at pH 3.5
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

PDB-9sjs:
Cryo-EM structure of Human Apoferritin at pH 4
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

PDB-9sjt:
Cryo-EM structure of Human Apoferritin at pH 5
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

PDB-9sju:
Cryo-EM structure of Human Apoferritin at pH 7
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

PDB-9sjv:
Cryo-EM structure of Human Apoferritin at pH 9
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

EMDB-52643:
Upregulated state of BetP in potassium
Method: single particle / : Urbansky K, Fu L, Madej MG, Horn G, Ziegler C

EMDB-52644:
Transient activated state of BetP
Method: single particle / : Urbansky K, Fu L, Madej MG, Ziegler C

EMDB-52645:
Transient activated state of BetP in complex with betaine
Method: single particle / : Urbansky K, Fu L, Madej MG, Ziegler C

EMDB-52651:
Downregulated state of the betaine transporter BetP
Method: single particle / : Heinz V, Urbansky K, Fu L, Madej MG, Ziegler C

EMDB-52738:
Upregulated state of BetP with Potassium in Amphipol A8-35
Method: single particle / : Urbansky K, Fu L, Madej MG, Ziegler C

PDB-9qcd:
Micro-ED structure of the NSH2-CSH2 tandem domain of SHP2 in complex with the bis-phosphorylated pY627-pY659-Gab1 (613-694) peptide
Method: electron crystallography / : Machner L, Shaikhqasem A, Hamdi F, Breithaupt C, Parthier C, Kyrilis FL, Kastritis PL, Feller SM, Stubbs MT

EMDB-52233:
Downregulated closed state of BetP in complex with betaine
Method: single particle / : Urbansky K, Fu L, Madej MG, Ziegler C

EMDB-52056:
Cryo-EM structure of photosystem II C2S2M2L2 supercomplex from the green alga Chlorella ohadii
Method: single particle / : Kopecny D, Kouril R, Ardhad R, Skalidis I, Kastritis P

PDB-9hd7:
Cryo-EM structure of photosystem II C2S2M2L2 supercomplex from the green alga Chlorella ohadii
Method: single particle / : Kopecny D, Kouril R, Ardhad R, Skalidis I, Kastritis P

EMDB-51034:
Cryo-EM reconstruction of the full-length E. coli transmembrane formate transporter FocA
Method: single particle / : Tueting C, Janson K, Kyrilis FL, Hamdi F, Kastritis PL

EMDB-51035:
Cryo-EM reconstruction of the full-length H209N mutant E. coli transmembrane formate transporter FocA
Method: single particle / : Tueting C, Janson K, Kyrilis FL, Hamdi F, Kastritis PL

EMDB-52595:
Asymmetric cryo-EM reconstruction of the full-length E. coli transmembrane formate transporter FocA
Method: single particle / : Tueting C, Janson K, Kyrilis FL, Hamdi F, Kastritis PL

PDB-9g49:
Cryo-EM reconstruction of the full-length E. coli transmembrane formate transporter FocA
Method: single particle / : Tueting C, Janson K, Kyrilis FL, Hamdi F, Kastritis PL

PDB-9g4d:
Cryo-EM reconstruction of the full-length H209N mutant E. coli transmembrane formate transporter FocA
Method: single particle / : Tueting C, Janson K, Kyrilis FL, Hamdi F, Kastritis PL

PDB-9i3k:
Asymmetric cryo-EM reconstruction of the full-length E. coli transmembrane formate transporter FocA
Method: single particle / : Tueting C, Janson K, Kyrilis FL, Hamdi F, Kastritis PL

PDB-9ig6:
Hen egg-white lysozyme structure determined by 3DED/MicroED on a 200 keV microscope
Method: electron crystallography / : Shaikhqasem A, Hamdi F, Machner L, Parthier C, Breithaupt C, Kyrilis FL, Feller SM, Kastritis PL, Stubbs MT

EMDB-19731:
Cryo-EM structure of Arf1-decorated membrane tubules
Method: helical / : Haupt C, Semchonok DA, Stubbs MT, Bacia K, Desfosses A, Kastritis PL, Hamdi F

EMDB-19732:
Cryo-EM structure of Arf1-decorated membrane tubules
Method: helical / : Haupt C, Semchonok DA, Stubbs MT, Bacia K, Desfosses A, Kastritis PL, Hamdi F

EMDB-19733:
Cryo-EM structure of Arf1-decorated membrane tubules
Method: single particle / : Haupt C, Semchonok DA, Stubbs MT, Bacia K, Desfosses A, Kastritis PL, Hamdi F

PDB-8s5c:
Cryo-EM structure of Arf1-decorated membrane tubules
Method: helical / : Haupt C, Semchonok DA, Stubbs MT, Bacia K, Desfosses A, Kastritis PL, Hamdi F

PDB-8s5d:
Cryo-EM structure of Arf1-decorated membrane tubules
Method: helical / : Haupt C, Semchonok DA, Stubbs MT, Bacia K, Desfosses A, Kastritis PL, Hamdi F

PDB-8s5e:
Cryo-EM structure of Arf1-decorated membrane tubules
Method: single particle / : Haupt C, Semchonok DA, Stubbs MT, Bacia K, Desfosses A, Kastritis PL, Hamdi F

EMDB-50149:
Myo-inositol-1-phosphate synthase from Thermochaetoides thermophila in complex with NAD
Method: single particle / : Traeger TK, Kyrilis FL, Hamdi F, Kastritis PL

PDB-9f2k:
Myo-inositol-1-phosphate synthase from Thermochaetoides thermophila in complex with NAD
Method: single particle / : Traeger TK, Kyrilis FL, Hamdi F, Kastritis PL

EMDB-17628:
Capsid structure of the L-A helper virus from native viral communities
Method: single particle / : Schmidt L, Tueting C, Kyrilis F, Hamdi F, Semchonok DA, Kastritis PL

PDB-8pe4:
Capsid structure of the L-A helper virus from native viral communities
Method: single particle / : Schmidt L, Tueting C, Stubbs MT, Kastritis PL

EMDB-15214:
Endogenous yeast L-A helper virus identified from native cell extracts
Method: single particle / : Schmidt L, Kyrilis F, Hamdi F, Semchonok DA, Kastritis PL

EMDB-15189:
Capsid structure of the L-A helper virus from native viral communities
Method: single particle / : Schmidt L, Tueting C, Kyrilis F, Hamdi F, Semchonok DA, Kastritis PL

EMDB-15215:
Asymmetric reconstruction of averaged ribosomes from Saccharomyces cerevisiae
Method: single particle / : Schmidt L, Tueting C, Kyrilis F, Hamdi F, Semchonok DA, Kastritis PL

PDB-8a5t:
Capsid structure of the L-A helper virus from native viral communities
Method: single particle / : Schmidt L, Tueting C, Stubbs MT, Kastritis PL

EMDB-15397:
Symmetry expanded D7 local refined map of 20 proteasome protein from Chaetomium thermophilum
Method: single particle / : Semchonok DA, Kyrilis FL, Hamdi F, Kastritis PL

EMDB-17629:
Symmetry expanded D7 local refined map of mitochondrial heat-shock protein 60-like protein from Chaetomium thermophilum
Method: single particle / : Semchonok DA, Kyrilis FL, Hamdi F, Kastritis PL

PDB-8pe8:
Symmetry expanded D7 local refined map of mitochondrial heat-shock protein 60-like protein from Chaetomium thermophilum
Method: single particle / : Semchonok DA, Kyrilis FL, Hamdi F, Kastritis PL

EMDB-16389:
Cryo-EM structure of photosystem II C2S2 supercomplex from Norway spruce (Picea babies) at 2.8 Angstrom resolution
Method: single particle / : Kopecny D, Semchonok DA, Kouril R

PDB-8c29:
Cryo-EM structure of photosystem II C2S2 supercomplex from Norway spruce (Picea abies) at 2.8 Angstrom resolution
Method: single particle / : Kopecny D, Semchonok DA, Kouril R

EMDB-16900:
Cryo-EM reconstruction of the native 24-mer E2o core of the 2-oxoglutarate dehydrogenase complex of C. thermophilum at 3.35 A resolution
Method: single particle / : Skalidis I, Tueting C, Kyrilis FL, Hamdi F, Kastritis PL

PDB-8oiu:
Cryo-EM reconstruction of the native 24-mer E2o core of the 2-oxoglutarate dehydrogenase complex of C. thermophilum at 3.35 A resolution
Method: single particle / : Skalidis I, Tueting C, Kyrilis FL, Hamdi F, Kastritis PL

EMDB-15516:
Cryo-EM Snapshots of Nanodisc-Embedded Native Eukaryotic Membrane Proteins
Method: single particle / : Janson K, Kyrilis FL, Tueting C, Alfes M, Das M, Traeger TK, Schmidt C, Hamdi F, Keller S, Meister A, Kastritis PL

EMDB-15517:
myo-Inositol-1-Phosphate Synthase
Method: single particle / : Janson K, Kyrilis FL, Tueting C, Alfes M, Das M, Traeger TK, Schmidt C, Hamdi F, Keller S, Meister A, Kastritis PL

EMDB-15364:
Cryo-EM structure of the SEA complex (consensus map)
Method: single particle / : Tafur L, Loewith R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more