[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 54 items for (author: griffin & rg)

EMDB-72725:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9ya9:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-72086:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BCL6-760 (LDD, local refined)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9q03:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BCL6-760 (LDD, local refined)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-51326:
Structure of the G848S mutant of human mitochondrial DNA polymerase gamma in complex with PZL-A
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-51327:
Structure of the G848S mutant of human mitochondrial DNA polymerase gamma
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-51328:
Structure of the A467T mutant of human mitochondrial DNA polymerase gamma in complex with PZL-A
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-51329:
Structure of the A467T mutant of human mitochondrial DNA polymerase gamma
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-51330:
Structure of WT human mitochondrial DNA polymerase gamma
Method: single particle / : Valenzuela S, Falkenberg M

PDB-9ggb:
Structure of the G848S mutant of human mitochondrial DNA polymerase gamma in complex with PZL-A
Method: single particle / : Valenzuela S, Falkenberg M

PDB-9ggc:
Structure of the G848S mutant of human mitochondrial DNA polymerase gamma
Method: single particle / : Valenzuela S, Falkenberg M

PDB-9ggd:
Structure of the A467T mutant of human mitochondrial DNA polymerase gamma in complex with PZL-A
Method: single particle / : Valenzuela S, Falkenberg M

PDB-9gge:
Structure of the A467T mutant of human mitochondrial DNA polymerase gamma
Method: single particle / : Valenzuela S, Falkenberg M

PDB-9ggf:
Structure of WT human mitochondrial DNA polymerase gamma
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-14359:
Tomogram showing SARS-CoV-2 virions that have a budding like profile within a viral containing compartment
Method: electron tomography / : Pinto AL, Rai RK, Brown JC, Griffin P, Edgar JR, Shah A, Singanayagam A, Hogg C, Barclay WS, Futter CE, Burgoyne T

EMDB-14361:
Tomogram showing SARS-CoV-2 virions that have a budding like profile within a viral containing compartment
Method: electron tomography / : Pinto AL, Rai RK, Brown JC, Griffin P, Edgar JR, Shah A, Singanayagam A, Hogg C, Barclay WS, Futter CE, Burgoyne T

EMDB-14363:
Tomogram showing SARS-CoV-2 virions that have a budding like profile within a viral containing compartment
Method: electron tomography / : Pinto AL, Rai RK, Brown JC, Griffin P, Edgar JR, Shah A, Singanayagam A, Hogg C, Barclay WS, Futter CE, Burgoyne T

EMDB-14364:
Tomogram showing SARS-CoV-2 S glycoprotein on the membrane of a viral containing compartment
Method: electron tomography / : Pinto AL, Rai RK, Brown JC, Griffin P, Edgar JR, Shah A, Singanayagam A, Hogg C, Barclay WS, Futter CE, Burgoyne T

EMDB-14365:
Tomogram showing SARS-CoV-2 S glycoprotein on the membrane of a viral containing compartment
Method: electron tomography / : Pinto AL, Rai RK, Brown JC, Griffin P, Edgar JR, Shah A, Singanayagam A, Hogg C, Barclay WS, Futter CE, Burgoyne T

EMDB-14366:
Tomogram of a SARS-CoV-2 virion fused to the plasma membrane of a ciliated airway cell
Method: electron tomography / : Pinto AL, Rai RK, Brown JC, Griffin P, Edgar JR, Shah A, Singanayagam A, Hogg C, Barclay WS, Futter CE, Burgoyne T

EMDB-14367:
Tomogram showing SARS-CoV-2 virions within a viral containing compartment of an infected airway cell
Method: electron tomography / : Pinto AL, Rai RK, Brown JC, Griffin P, Edgar JR, Shah A, Singanayagam A, Hogg C, Barclay WS, Futter CE, Burgoyne T

EMDB-23212:
Alpha-synuclein fibrils
Method: helical / : Hojjatian A, Dasari A, Sengupta U, Taylor D, Daneshparvar N, Abbasi Yeganeh F, Dillard L, Michael B, Griffin R, Borgnia M, Kayed R, Taylor K, Lim K

EMDB-23708:
ATP-bound AMP-activated protein kinase
Method: single particle / : Yan Y, Mukherjee S

PDB-7m74:
ATP-bound AMP-activated protein kinase
Method: single particle / : Yan Y, Mukherjee S, Harikumar KG, Strutzenberg T, Zhou XE, Powell SK, Xu T, Sheldon R, Lamp J, Brunzelle JS, Radziwon K, Ellis A, Novick SJ, Vega IE, Jones R, Miller LJ, Xu HE, Griffin PR, Kossiakoff AA, Melcher K

EMDB-25125:
Cryo-EM structure of human GPR158
Method: single particle / : Patil DN, Singh S, Singh AK, Martemyanov KA

EMDB-25126:
Cryo-EM structure of GPR158 coupled to the RGS7-Gbeta5 complex
Method: single particle / : Patil DN, Singh S, Singh AK, Martemyanov KA

PDB-7she:
Cryo-EM structure of human GPR158
Method: single particle / : Patil DN, Singh S, Singh AK, Martemyanov KA

PDB-7shf:
Cryo-EM structure of GPR158 coupled to the RGS7-Gbeta5 complex
Method: single particle / : Patil DN, Singh S, Singh AK, Martemyanov KA

EMDB-23574:
Structure of Plasmodium falciparum 20S proteasome with bound bortezomib.
Method: single particle / : Liu B, Hanssen E, Leis AP, Xie SC, Morton CJ, Metcalfe RD, Tilley L, Griffin MDW

EMDB-23575:
Structure of Plasmodium falciparum 20S proteasome with bound ML052.
Method: single particle / : Hanssen E, Liu B, Leis AP, Xie SC, Morton CJ, Metcalfe RD, Tilley L, Griffin MDW

EMDB-23576:
Structure of human 20S proteasome with bound ML052.
Method: single particle / : Hanssen E, Xie SC, Liu B, Leis AP, Morton CJ, Metcalfe RD, Tilley L, Griffin MDW

PDB-7lxt:
Structure of Plasmodium falciparum 20S proteasome with bound bortezomib
Method: single particle / : Morton CJ, Metcalfe RD, Liu B, Xie SC, Hanssen E, Leis AP, Tilley L, Griffin MDW

PDB-7lxu:
Structure of Plasmodium falciparum 20S proteasome with bound MPI-5
Method: single particle / : Metcalfe RD, Morton CJ, Xie SC, Liu B, Hanssen E, Leis AP, Tilley L, Griffin MDW

PDB-7lxv:
Structure of human 20S proteasome with bound MPI-5
Method: single particle / : Metcalfe RD, Morton CJ, Liu B, Xie SC, Hanssen E, Leis AP, Tilley L, Griffin MDW

EMDB-22336:
Cryo-EM structure of ATP-bound fully inactive AMPK in complex with Dorsomorphin (Compound C) and Fab-nanobody
Method: single particle / : Yan Y, Murkherjee S, Zhou XE, Xu TH, Xu HE, Kossiakoff AA, Melcher K

EMDB-22337:
Cryo-EM structure of ATP-bound fully inactive AMPK in complex with Fab and nanobody
Method: single particle / : Yan Y, Murkherjee S, Zhou XE, Xu TH, Xu HE, Kossiakoff AA, Melcher K

PDB-7jhg:
Cryo-EM structure of ATP-bound fully inactive AMPK in complex with Dorsomorphin (Compound C) and Fab-nanobody
Method: single particle / : Yan Y, Murkherjee S, Zhou XE, Xu TH, Xu HE, Kossiakoff AA, Melcher K

PDB-7jhh:
Cryo-EM structure of ATP-bound fully inactive AMPK in complex with Fab and nanobody
Method: single particle / : Yan Y, Murkherjee S, Zhou XE, Xu TH, Xu HE, Kossiakoff AA, Melcher K

EMDB-21652:
NanR dimer-DNA hetero-complex
Method: single particle / : Hariprasad V, Horne C

EMDB-21661:
Hexameric NanR-DNA hetero-complex
Method: single particle / : Hariprasad V, Horne C

PDB-6wfq:
NanR dimer-DNA hetero-complex
Method: single particle / : Hariprasad V, Horne C, Santosh P, Amy H, Emre B, Rachel N, Michael G, Georg R, Borries D, Renwick D

PDB-6wg7:
Coordinates of NanR dimer fitted in Hexameric NanR-DNA hetero-complex cryo-EM map
Method: single particle / : Hariprasad V, Horne C, Santosh P, Amy H, Emre B, Rachel N, Michael G, Georg R, Borries D, Renwick D

EMDB-0021:
Single protofilament beta-2-microglobulin amyloid fibril
Method: helical / : Iadanza MG, Ranson NA

EMDB-0014:
Two protofilament beta-2-microglobulin amyloid fibril
Method: helical / : Iadanza MG, Ranson NA

EMDB-9013:
EsCas13d-crRNA binary complex
Method: single particle / : Zhang C, Lyumkis D

EMDB-9014:
EsCas13d-crRNA-target RNA ternary complex
Method: single particle / : Zhang C, Lyumkis D

EMDB-9015:
Apo-EsCas13d
Method: single particle / : Zhang C, Lyumkis D

PDB-6e9e:
EsCas13d-crRNA binary complex
Method: single particle / : Zhang C, Lyumkis D

PDB-6e9f:
EsCas13d-crRNA-target RNA ternary complex
Method: single particle / : Zhang C, Lyumkis D

EMDB-9542:
Zika virus complexed with a neutralizing antibody Z23-Fab
Method: single particle / : Gao GF, Shi Y, Peng R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more