[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 107 items for (author: dent & k)

EMDB-63560:
Cryo-EM structure of human 80S ribosome in complex with montanine
Method: single particle / : Sakai R, Tanaka Y, Sato K, Tsugita A, Matumoto K, Thaveepornkul L, Chimnaronk S, Takada A, Miyamoto H, Kurokawa R, Yoshida M, Yokoyama T, Evidente A, Tsuge Y, Watari H, Sumiya T

PDB-9m0p:
Cryo-EM structure of human 80S ribosome in complex with montanine
Method: single particle / : Sakai R, Tanaka Y, Sato K, Tsugita A, Matumoto K, Thaveepornkul L, Chimnaronk S, Takada A, Miyamoto H, Kurokawa R, Yoshida M, Yokoyama T, Evidente A, Tsuge Y, Watari H, Sumiya T

EMDB-46525:
Proteasome core particle assembly intermediate 5-alpha/3-beta/Ump1 purified from Saccharomyces cerevisiae.
Method: single particle / : Chen X, Kaur M, Roelofs J, Walters KJ

EMDB-46535:
Proteasome core particle assembly intermediate 5-alpha/4-beta/Ump1 purified from Saccharomyces cerevisiae.
Method: single particle / : Chen X, Kaur M, Roelofs J, Walters KJ

EMDB-46559:
Proteasome core particle assembly intermediate Blm10:alpha-ring purified from Saccharomyces cerevisiae.
Method: single particle / : Chen X, Kaur M, Roelofs J, Walters KJ

EMDB-46570:
Core particle assembly intermediate Capless 13S purified from Saccharomyces cerevisiae
Method: single particle / : Chen X, Kaur M, Roelofs J, Walters KJ

EMDB-46461:
Proteasome core particle assembly intermediate Blm10:13S purified from Saccharomyces cerevisiae
Method: single particle / : Chen X, Kaur M, Roelofs J, Walters KJ

PDB-9d0t:
Proteasome core particle assembly intermediate Blm10:13S purified from Saccharomyces cerevisiae
Method: single particle / : Chen X, Kaur M, Roelofs J, Walters KJ

EMDB-43595:
Nucleosome containing 8oxoG at SHL-6
Method: single particle / : Weaver TM, Ling JA, Freudenthal BD

EMDB-43596:
OGG1 bound to a nucleosome containing 8oxoG at SHL-6 (composite map)
Method: single particle / : Weaver TM, Ling JA, Freudenthal BD

EMDB-43597:
OGG1 bound to a nucleosome containing 8oxoG at SHL-6 (consensus map)
Method: single particle / : Weaver TM, Ling JA, Freudenthal BD

EMDB-43598:
OGG1 bound to a nucleosome containing 8oxoG at SHL-6 (NCP local refine)
Method: single particle / : Weaver TM, Ling JA, Freudenthal BD

EMDB-43599:
OGG1 bound to a nucleosome containing 8oxoG at SHL-6 (OGG1/DNA local refine)
Method: single particle / : Weaver TM, Ling JA, Freudenthal BD

EMDB-43600:
Nucleosome containing 8oxoG at SHL4
Method: single particle / : Weaver TM, Ling JA, Freudenthal BD

EMDB-43601:
OGG1 bound to a nucleosome containing 8oxoG at SHL4 (composite map)
Method: single particle / : Weaver TM, Ling JA, Freudenthal BD

EMDB-43602:
OGG1 bound to a nucleosome containing 8oxoG at SHL4 (consensus map)
Method: single particle / : Weaver TM, Ling JA, Freudenthal BD

EMDB-43603:
OGG1 bound to a nucleosome containing 8oxoG at SHL4 (OGG1/DNA local refine)
Method: single particle / : Weaver TM, Ling JA, Freudenthal BD

PDB-8vws:
Nucleosome containing 8oxoG at SHL-6
Method: single particle / : Weaver TM, Ling JA, Freudenthal BD

PDB-8vwt:
OGG1 bound to a nucleosome containing 8oxoG at SHL-6 (composite map)
Method: single particle / : Weaver TM, Ling JA, Freudenthal BD

PDB-8vwu:
Nucleosome containing 8oxoG at SHL4
Method: single particle / : Weaver TM, Ling JA, Freudenthal BD

PDB-8vwv:
OGG1 bound to a nucleosome containing 8oxoG at SHL4 (composite map)
Method: single particle / : Weaver TM, Ling JA, Freudenthal BD

EMDB-27770:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 1
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

EMDB-27771:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 2
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

EMDB-27772:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 3
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

EMDB-27773:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 4
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

EMDB-27774:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 5
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

PDB-8dxn:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 1
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

PDB-8dxo:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 2
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

PDB-8dxp:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 3
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

PDB-8dxq:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 4
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

PDB-8dxr:
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 5
Method: single particle / : Takahashi H, Yamada T, Denton JS, Strange K, Karakas E

EMDB-15113:
Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
Method: single particle / : Faille A, Warren AJ, Dent KC

PDB-8a3d:
Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
Method: single particle / : Faille A, Warren AJ, Dent KC

EMDB-14317:
Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map
Method: single particle / : Pellegrino S, Dent KC, Spikes T, Warren AJ

EMDB-14318:
Cryo-EM reconstruction of the human 40S ribosomal subunit - Body domain
Method: single particle / : Pellegrino S, Dent KC, Spikes T, Warren AJ

EMDB-14319:
Cryo-EM reconstruction of the human 40S ribosomal subunit - Head domain
Method: single particle / : Pellegrino S, Dent KC, Spikes T, Warren AJ

PDB-7r4x:
Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map
Method: single particle / : Pellegrino S, Dent KC, Spikes T, Warren AJ

EMDB-26336:
APE1 bound to a nucleosome core particle with AP-site at SHL-6
Method: single particle / : Weaver TM, Freudenthal BD

EMDB-26337:
Nucleosome core particle with AP-site at SHL-6
Method: single particle / : Freudenthal BD, Weaver TM

EMDB-26338:
nucleosome core particle with AP-site at SHL-6.5
Method: single particle / : Freudenthal BD, Weaver TM

EMDB-26339:
Nucleosome core particle with AP-site at SHL0
Method: single particle / : Freudenthal BD, Weaver TM

PDB-7u50:
APE1 bound to a nucleosome core particle with AP-site at SHL-6
Method: single particle / : Weaver TM, Freudenthal BD

PDB-7u51:
Nucleosome core particle with AP-site at SHL-6
Method: single particle / : Freudenthal BD, Weaver TM

PDB-7u52:
nucleosome core particle with AP-site at SHL-6.5
Method: single particle / : Freudenthal BD, Weaver TM

PDB-7u53:
Nucleosome core particle with AP-site at SHL0
Method: single particle / : Freudenthal BD, Weaver TM

EMDB-13967:
Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4
Method: single particle / : Rebelo-Guiomar P, Pellegrino S, Dent KC, Warren AJ, Minczuk M

PDB-7qh7:
Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4
Method: single particle / : Rebelo-Guiomar P, Pellegrino S, Dent KC, Warren AJ, Minczuk M

EMDB-13962:
Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 2
Method: single particle / : Rebelo-Guiomar P, Pellegrino S, Dent KC, Warren AJ, Minczuk M

EMDB-13963:
Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 3
Method: single particle / : Rebelo-Guiomar P, Pellegrino S, Dent KC, Warren AJ, Minczuk M

EMDB-13965:
Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1
Method: single particle / : Rebelo-Guiomar P, Pellegrino S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more