[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 410 items for (author: davide & t)

EMDB-70449:
Globular domain of monkeypox virus OPG153 (A28) bound to antibody 02M12
Method: single particle / : Rundlet EJ, Zhou L, McLellan JS

EMDB-70450:
Globular domain of monkeypox virus OPG153 (A28) in complex with antibodies 08E11 and 12I12
Method: single particle / : Zhou L, Rundlet EJ, McLellan JS

PDB-9og1:
Globular domain of monkeypox virus OPG153 (A28) bound to antibody 02M12
Method: single particle / : Rundlet EJ, Zhou L, McLellan JS

PDB-9og2:
Globular domain of monkeypox virus OPG153 (A28) in complex with antibodies 08E11 and 12I12
Method: single particle / : Zhou L, Rundlet EJ, McLellan JS

EMDB-49486:
MARV GP in complex with MARV16 Fab
Method: single particle / : Addetia A, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9njl:
MARV GP in complex with MARV16 Fab
Method: single particle / : Addetia A, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-70018:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 0 (unbound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70019:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 1 (1 Fab bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70020:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 2 (2 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70021:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 3 (3 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70022:
BG505 SOSIP in complex with 007 bNAb IgG1 - trimer-dimer class
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2q:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 0 (unbound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2r:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 1 (1 Fab bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2s:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 2 (2 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2t:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 3 (3 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2u:
BG505 SOSIP in complex with 007 bNAb IgG1 - trimer-dimer class
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-45301:
mouse Seipin/Adig complex
Method: single particle / : Li C, Han Y, Wynn RM, Chen Z, Scherer PE

EMDB-45302:
mouse Seipin complex
Method: single particle / : Li C, Han Y, Wynn RM, Chen Z, Scherer PE

PDB-9c8d:
mouse Seipin/Adig complex
Method: single particle / : Li C, Han Y, Wynn RM, Chen Z, Scherer PE

PDB-9c8e:
mouse Seipin complex
Method: single particle / : Li C, Han Y, Wynn RM, Chen Z, Scherer PE

EMDB-46649:
Cryo-EM structure of the BG505 SOSIPv2
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9d8v:
Cryo-EM structure of the BG505 SOSIPv2
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-52624:
Dopamine 1 receptor:GaS complex bound to 19B
Method: single particle / : Clairfeuille T, Rodriguez Sarmiento RM

EMDB-52625:
Dopamine 1 receptor:GaS complex bound to 24
Method: single particle / : Clairfeuille T, Rodriguez Sarmiento RM

PDB-9i52:
Dopamine 1 receptor:GaS complex bound to 19B
Method: single particle / : Clairfeuille T, Rodriguez Sarmiento RM

PDB-9i54:
Dopamine 1 receptor:GaS complex bound to 24
Method: single particle / : Clairfeuille T, Rodriguez Sarmiento RM

EMDB-42363:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 05_B08 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-42364:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 01_D03 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-42365:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 04_A06 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-42366:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 04_A06 and PGDM1400 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-8ulr:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 05_B08 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-8uls:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 01_D03 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-8ult:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 04_A06 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-8ulu:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 04_A06 and PGDM1400 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-51613:
Giant Jyvaskylavirus at 6.3 Ang resolution
Method: single particle / : Abrescia NG, Arriaga I, de Freitas Almeida GM, Sundberg LR, Ravantti J

EMDB-45175:
SARS-CoV-2 S + S2L20 (local refinement of NTD and S2L20 Fab variable region)
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9c44:
SARS-CoV-2 S + S2L20
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9c45:
SARS-CoV-2 S + S2L20 (local refinement of NTD and S2L20 Fab variable region)
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-44103:
Structure of the Porcine deltacoronavirus (PDCoV) receptor-binding domain bound to the PD33 antibody Fab fragment and the Kappa light chain nanobody
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-46804:
PDCoV S trimer bound by three copies of PD41 Fab
Method: single particle / : Asarnow D, Rexhepaj M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-46805:
PDCoV S RBD bound to PD41 Fab (local refinement)
Method: single particle / : Asarnow D, Rexhepaj M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9b2c:
Structure of the Porcine deltacoronavirus (PDCoV) receptor-binding domain bound to the PD33 antibody Fab fragment and the Kappa light chain nanobody
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9dez:
PDCoV S trimer bound by three copies of PD41 Fab
Method: single particle / : Asarnow D, Rexhepaj M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9df0:
PDCoV S RBD bound to PD41 Fab (local refinement)
Method: single particle / : Asarnow D, Rexhepaj M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-50531:
Cryo-electron tomogram of Aureispira sp. CCB-QB1
Method: electron tomography / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more