[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 336 items for (author: dave & d)

EMDB-52758:
Cryo-EM structure of CAK-CDK11
Method: single particle / : Cushing VI, Greber BJ, McGeoch AJS, Feng J

EMDB-52759:
Cryo-EM structure of CAK-CDK2-cyclin A2 bound to AMP-PNP (locally refined map)
Method: single particle / : Cushing VI, Greber BJ, McGeoch AJS, Feng J

EMDB-52760:
Cryo-EM structure of CAK-CDK2 (determined in the presence of ADP-nitrate)
Method: single particle / : Cushing VI, Greber BJ, McGeoch AJS, Feng J

EMDB-52761:
Cryo-EM structure of CAK-CDK2 (determined in the presence of ADP-AlFx)
Method: single particle / : Cushing VI, Greber BJ, McGeoch AJS, Feng J

EMDB-53027:
Cryo-EM structure of CAK-CDK2-cyclin A2 bound to AMP-PNP
Method: single particle / : Cushing VI, Greber BJ, McGeoch AJS, Feng J

EMDB-53028:
Cryo-EM structure of apo-CAK-CDK2-cyclin A2
Method: single particle / : Cushing VI, Greber BJ, McGeoch AJS, Feng J

EMDB-54971:
Cryo-EM structure of CAK-CDK1-cyclin B1
Method: single particle / : Cushing VI, Greber BJ, McGeoch AJS, Feng J, Davey NE, Williams SL

PDB-9i9i:
Cryo-EM structure of CAK-CDK11
Method: single particle / : Cushing VI, Greber BJ, McGeoch AJS, Feng J

PDB-9i9j:
Cryo-EM structure of CAK-CDK2 (determined in the presence of ADP-nitrate)
Method: single particle / : Cushing VI, Greber BJ, McGeoch AJS, Feng J

PDB-9i9k:
Cryo-EM structure of CAK-CDK2 (determined in the presence of ADP-AlFx)
Method: single particle / : Cushing VI, Greber BJ, McGeoch AJS, Feng J

PDB-9qcv:
Cryo-EM structure of CAK-CDK2-cyclin A2 bound to AMP-PNP
Method: single particle / : Cushing VI, Greber BJ, McGeoch AJS, Feng J

PDB-9qcx:
Cryo-EM structure of apo-CAK-CDK2-cyclin A2
Method: single particle / : Cushing VI, Greber BJ, McGeoch AJS, Feng J

PDB-9skq:
Cryo-EM structure of CAK-CDK1-cyclin B1
Method: single particle / : Cushing VI, Greber BJ, McGeoch AJS, Feng J, Davey NE, Williams SL

EMDB-71704:
HU-38 Fab with PRAME pMHC
Method: single particle / : Mortenson DE, Yu X

PDB-9pkv:
HU-38 Fab with PRAME pMHC
Method: single particle / : Mortenson DE, Yu X

EMDB-52204:
Cryo-EM structure of CDK2-cyclin A bound to a SAMHD1 peptide
Method: single particle / : de Martin Garrido N, Ord M, Cushing VI, Greber BJ, Pryciak PM, Davey NE

PDB-9hiw:
Cryo-EM structure of CDK2-cyclin A bound to a SAMHD1 peptide
Method: single particle / : de Martin Garrido N, Ord M, Cushing VI, Greber BJ, Pryciak PM, Davey NE

EMDB-52208:
Cryo-EM structure of CDK2-cyclin A bound to a SCAPER peptide
Method: single particle / : de Martin Garrido N, Ord M, Cushing VI, Greber BJ, Pryciak PM, Davey NE

PDB-9hj1:
Cryo-EM structure of CDK2-cyclin A bound to a SCAPER peptide
Method: single particle / : de Martin Garrido N, Ord M, Cushing VI, Greber BJ, Pryciak PM, Davey NE

EMDB-52201:
Cryo-EM structure of CDK2-cyclin A bound to a GMNC peptide
Method: single particle / : de Martin Garrido N, Ord M, Cushing VI, Greber BJ, Pryciak PM, Davey NE

PDB-9hiu:
Cryo-EM structure of CDK2-cyclin A bound to a GMNC peptide
Method: single particle / : de Martin Garrido N, Ord M, Cushing VI, Greber BJ, Pryciak PM, Davey NE

EMDB-49523:
Cryo-EM structure of hexameric SenDRT9 RT-ncRNA complex
Method: single particle / : Burman N, Pandey S, Wiedenheft B, Sternberg SH

EMDB-49525:
Cryo-EM structure of the trimeric SenDRT9 RT-ncRNA complex (GST fusion)
Method: single particle / : Burman N, Pandey S, Wiedenheft B, Sternberg SH

PDB-9nlv:
Cryo-EM structure of hexameric SenDRT9 RT-ncRNA complex
Method: single particle / : Burman N, Pandey S, Wiedenheft B, Sternberg SH

PDB-9nlx:
Cryo-EM structure of the trimeric SenDRT9 RT-ncRNA complex (GST fusion)
Method: single particle / : Burman N, Pandey S, Wiedenheft B, Sternberg SH

EMDB-49104:
WEEV McMillan VLP in complex with VLDLR-LBD-Fc ASU
Method: single particle / : Raju S, Diamond MS, Fremont DH

EMDB-49105:
WEEV McMillan VLP Apo
Method: single particle / : Raju S, Diamond MS, Fremont DH

EMDB-49106:
SINV-WEEV Fleming in complex with VLDLR-LBD-Fc ASU
Method: single particle / : Raju S, Diamond MS, Fremont DH

EMDB-47775:
WEEV CBA87 VLP in complex with human PCDH10-EC1
Method: single particle / : Raju S, Diamond MS, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-47821:
WEEV McMillan VLP in complex with VLDLR LA(1-2)
Method: single particle / : Raju S, Diamond MS, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-47822:
SINV-WEEV Fleming in complex with VLDLR LA(1-2)
Method: single particle / : Raju S, Diamond MS, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-47846:
RRV DKTA VLP in complex with VLDLR-LBD-Fc
Method: single particle / : Raju S, Diamond MS, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-9e96:
WEEV CBA87 VLP in complex with human PCDH10-EC1
Method: single particle / : Raju S, Diamond MS, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-9e9y:
WEEV McMillan VLP in complex with VLDLR LA(1-2)
Method: single particle / : Raju S, Diamond MS, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-9e9z:
SINV-WEEV Fleming in complex with VLDLR LA(1-2)
Method: single particle / : Raju S, Diamond MS, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-9eau:
RRV DKTA VLP in complex with VLDLR-LBD-Fc
Method: single particle / : Raju S, Diamond MS, Fremont DH, Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-19898:
Plasmodium falciparum sporozoite actin determined in situ
Method: subtomogram averaging / : Prazak V, Ferreira JL

EMDB-44872:
EBOV GP/Nanosota-EB1
Method: single particle / : Bu F, Ye G, Liu B, Li F

EMDB-44873:
EBOV GP/Nanosota-EB2 complex
Method: single particle / : Bu F, Ye G, Liu B, Li F

PDB-9bsu:
EBOV GP/Nanosota-EB1
Method: single particle / : Bu F, Ye G, Liu B, Li F

PDB-9bsv:
EBOV GP/Nanosota-EB2 complex
Method: single particle / : Bu F, Ye G, Liu B, Li F

EMDB-42954:
ACAD11 D220A with 4-hydroxyvaleryl-CoA
Method: single particle / : Zhang J, Bartlett A, Rashan E, Yuan P, Pagliarini D

EMDB-42955:
ACAD11 D753N with 4-phosphovaleryl-CoA
Method: single particle / : Zhang J, Bartlett A, Rashan E, Yuan P, Pagliarini D

PDB-8v3u:
ACAD11 D220A with 4-hydroxyvaleryl-CoA
Method: single particle / : Zhang J, Bartlett A, Rashan E, Yuan P, Pagliarini D

PDB-8v3v:
ACAD11 D753N with 4-phosphovaleryl-CoA
Method: single particle / : Zhang J, Bartlett A, Rashan E, Yuan P, Pagliarini D

EMDB-45610:
Cryo-EM of CarbIF tube
Method: helical / : Sonani RR, Bianco S, Adams DJ, Egelman EH

EMDB-44410:
CryoEM structure of Apo-DIM2
Method: single particle / : Song J, Shao Z

EMDB-44411:
CryoEM structure of DIM2-HP1-H3K9me3-DNA complex
Method: single particle / : Song J, Shao Z

EMDB-44415:
CryoEM structure of DIM2-HP1 complex
Method: single particle / : Song J, Shao Z

PDB-9bap:
CryoEM structure of Apo-DIM2
Method: single particle / : Song J, Shao Z

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more