[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 43 items for (author: daou & s)

EMDB-51464:
CryoEM structure of mammalian AAP in complex with acetyl-alanyl-chloromethylketone
Method: single particle / : Kiss-Szeman AJ, Jakli I, Hosogi N, Banoczi Z, Harmat V, Memyhard DK, Perczel A

EMDB-51501:
Cryo-EM structure of acylaminoacyl-peptidase in complex with dichlorvos
Method: single particle / : Kiss-Szeman AJ, Traore D, Jakli I, Harmat V, Menyhard DK, Perczel A

EMDB-52489:
Cryo-EM structure of acylaminoacyl peptidase (AAP) in covalent complex with inhibitor AEBSF
Method: single particle / : Kiss-Szeman AJ, Menyhard DK, Harmat V, Perczel A

PDB-9gne:
CryoEM structure of mammalian AAP in complex with acetyl-alanyl-chloromethylketone
Method: single particle / : Kiss-Szeman AJ, Jakli I, Hosogi N, Banoczi Z, Harmat V, Memyhard DK, Perczel A

PDB-9gou:
Cryo-EM structure of acylaminoacyl-peptidase in complex with dichlorvos
Method: single particle / : Kiss-Szeman AJ, Traore D, Jakli I, Harmat V, Menyhard DK, Perczel A

PDB-9hxq:
Cryo-EM structure of acylaminoacyl peptidase (AAP) in covalent complex with inhibitor AEBSF
Method: single particle / : Kiss-Szeman AJ, Menyhard DK, Harmat V, Perczel A

EMDB-42407:
Structure of the KEOPS complex (Cgi121/Bud32/Kae1/Pcc1)
Method: single particle / : Ona Chuquimarca SM, Beenstock J, Daou S, Keszei AFA, Yin Z, Sicheri F

EMDB-42443:
Structure of the KEOPS complex (Cgi121/Bud32/Kae1/Pcc1) bound to tRNA in its native-like conformation.
Method: single particle / : Ona Chuquimarca SM, Beenstock J, Daou S, Keszei AFA, Yin Z, Sicheri F

EMDB-46630:
Structure of the KEOPS complex (Cgi121/Bud32/Kae1/Pcc1) bound to tRNA in a distorted tRNA conformation
Method: single particle / : Ona Chuquimarca SM, Beenstock J, Daou S, Keszei AFA, Yin Z, Sicheri F

PDB-8unk:
Structure of the KEOPS complex (Cgi121/Bud32/Kae1/Pcc1)
Method: single particle / : Ona Chuquimarca SM, Beenstock J, Daou S, Keszei AFA, Yin Z, Sicheri F

PDB-8up5:
Structure of the KEOPS complex (Cgi121/Bud32/Kae1/Pcc1) bound to tRNA in its native-like conformation.
Method: single particle / : Ona Chuquimarca SM, Beenstock J, Daou S, Keszei AFA, Yin Z, Sicheri F

PDB-9d85:
Structure of the KEOPS complex (Cgi121/Bud32/Kae1/Pcc1) bound to tRNA in a distorted tRNA conformation
Method: single particle / : Ona Chuquimarca SM, Beenstock J, Daou S, Keszei AFA, Yin Z, Sicheri F

EMDB-50358:
In vitro-induced genome-releasing intermediate of Rhodobacter microvirus Ebor computed with C5 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-50356:
Empty capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Byrom L, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-50357:
Native capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-50359:
Rhodobacter microvirus Ebor attached to B10 host cell reconstructed by single particle analysis with applied C5 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-50360:
Rhodobacter microvirus Ebor attached to the outer membrane vesicle
Method: subtomogram averaging / : Bardy P, Blaza JN, Jenkins HT, Nicholas TR, Konig HC, Alim NTB, Hart SJ, Turkenburg JP, Fogg PCM, Beatty JT, Antson AA

EMDB-50361:
Rhodobacter microvirus Ebor attached to the host cell reconstructed by subtomogram averaging
Method: subtomogram averaging / : Bardy P, Traore DAK, Blaza JN, Jenkins HT, Nicholas TR, Hart SJ, Turkenburg JP, Fogg PCM, Antson AA

PDB-9ffg:
Empty capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Byrom L, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

PDB-9ffh:
Native capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-41094:
CryoEM structure of the HisRS-like domain of human GCN2
Method: single particle / : Yin JZ, Keszei AFA, Mazhab-Jafari MT, Sicheri F

PDB-8t7t:
CryoEM structure of the HisRS-like domain of human GCN2
Method: single particle / : Yin JZ, Keszei AFA, Mazhab-Jafari MT, Sicheri F

EMDB-12145:
Structure of MsbA in Salipro with ADP vanadate
Method: single particle / : Traore DAK, Tidow H

PDB-7bcw:
Structure of MsbA in Salipro with ADP vanadate
Method: single particle / : Traore DAK, Tidow H

EMDB-4620:
A dimer component of alpha-1 antitrypsin heat-induced polymers generated from wild-type M plasma protein and decorated with Fab 4B12
Method: single particle / : Elliston ELK, Redzej A, Orlova EV, Lomas DA, Irving JA

EMDB-4631:
A dimer component of alpha-1 antitrypsin polymers isolated from ZZ explant liver tissue and decorated with Fab 4B12 (component B with ~90 degree rotation around the dimer axis)
Method: single particle / : Faull SV, Elliston ELK, Orlova EV, Gooptu B, Lomas DA, Irving JA

EMDB-4632:
A dimer component of alpha-1 antitrypsin polymers isolated from ZZ explant liver tissue and decorated with Fab 4B12 (component A with ~60 degree rotation around the dimer axis)
Method: single particle / : Elliston ELK, Faull SV, Orlova EV, Gooptu B, Lomas DA, Irving JA

EMDB-10041:
SIVrcm intasome
Method: single particle / : Cherepanov P, Nans A, Cook N

EMDB-10042:
SIVrcm intasome in complex with bictegravir
Method: single particle / : Cherepanov P, Nans A, Cook N

EMDB-10043:
SIVrcm intasome in complex with dolutegravir
Method: single particle / : Cherepanov P, Nans A, Cook N

EMDB-10044:
SIVrcm intasome (Q148H/G140S) in complex with bictegravir
Method: single particle / : Cherepanov P, Nans A, Cook N

PDB-6rwl:
SIVrcm intasome
Method: single particle / : Cherepanov P, Nans A, Cook N

PDB-6rwm:
SIVrcm intasome in complex with bictegravir
Method: single particle / : Cherepanov P, Nans A, Cook N

PDB-6rwn:
SIVrcm intasome in complex with dolutegravir
Method: single particle / : Cherepanov P, Nans A, Cook N

PDB-6rwo:
SIVrcm intasome (Q148H/G140S) in complex with bictegravir
Method: single particle / : Cherepanov P, Nans A, Cook N

EMDB-2793:
Membrane embedded pleurotolysin pore with 13 fold symmetry
Method: single particle / : Lukoyanova N, Kondos SC, Farabella I, Law RHP, Reboul CF, Caradoc-Davies TT, Spicer BA, Kleifeld O, Perugini M, Ekkel S, Hatfaludi T, Oliver K, Hotze EM, Tweten RK, Whisstock JC, Topf M, Dunstone MA, Saibil HR

EMDB-2794:
Membrane bound pleurotolysin prepore (TMH1 lock) trapped with engineered disulphide cross-link
Method: single particle / : Lukoyanova N, Kondos SC, Farabella I, Law RHP, Reboul CF, Caradoc-Davies TT, Spicer BA, Kleifeld O, Perugini M, Ekkel S, Hatfaludi T, Oliver K, Hotze EM, Tweten RK, Whisstock JC, Topf M, Dunstone MA, Saibil HR

EMDB-2795:
Membrane bound pleurotolysin prepore (TMH2 helix lock) trapped with engineered disulphide cross-link
Method: single particle / : Lukoyanova N, Kondos SC, Farabella I, Law RHP, Reboul CF, Caradoc-Davies TT, Spicer BA, Kleifeld O, Perugini M, Ekkel S, Hatfaludi T, Oliver K, Hotze EM, Tweten RK, Whisstock JC, Topf M, Dunstone MA, Saibil HR

EMDB-2796:
Membrane bound pleurotolysin prepore (TMH2 strand lock) trapped with engineered disulphide cross-link
Method: single particle / : Lukoyanova N, Kondos SC, Farabella I, Law RHP, Reboul CF, Caradoc-Davies TT, Spicer BA, Kleifeld O, Perugini M, Ekkel S, Hatfaludi T, Oliver K, Hotze EM, Tweten RK, Whisstock JC, Topf M, Dunstone MA, Saibil HR

PDB-4v2t:
Membrane embedded pleurotolysin pore with 13 fold symmetry
Method: single particle / : Lukoyanova N, Kondos SC, Farabella I, Law RHP, Reboul CF, Caradoc-Davies TT, Spicer BA, Kleifeld O, Perugini M, Ekkel S, Hatfaludi T, Oliver K, Hotze EM, Tweten RK, Whisstock JC, Topf M, Dunstone MA, Saibil HR

PDB-4v3a:
Membrane bound pleurotolysin prepore (TMH1 lock) trapped with engineered disulphide cross-link
Method: single particle / : Lukoyanova N, Kondos SC, Farabella I, Law RHP, Reboul CF, CaradocDavies TT, Spicer BA, Kleifeld O, Perugini M, Ekkel S, Hatfaludi T, Oliver K, Hotze EM, Tweten RK, Whisstock JC, Topf M, Dunstone MA, Saibil HR

PDB-4v3m:
Membrane bound pleurotolysin prepore (TMH2 helix lock) trapped with engineered disulphide cross-link
Method: single particle / : Lukoyanova N, Kondos SC, Farabella I, Law RHP, Reboul CF, Caradoc-Davies TT, Spicer BA, Kleifeld O, Perugini M, Ekkel S, Hatfaludi T, Oliver K, Hotze EM, Tweten RK, Whisstock JC, Topf M, Dunstone MA, Saibil HR

PDB-4v3n:
Membrane bound pleurotolysin prepore (TMH2 strand lock) trapped with engineered disulphide cross-link
Method: single particle / : Lukoyanova N, Kondos SC, Farabella I, Law RHP, Reboul CF, Caradoc-Davies TT, Spicer BA, Kleifeld O, Perugini M, Ekkel S, Hatfaludi T, Oliver K, Hotze EM, Tweten RK, Whisstock JC, Topf M, Dunstone MA, Saibil HR

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more