[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 67 items for (author: coleman & m)

EMDB-49758:
Structure of Synaptic Vesicle Protein 2A Bound to Brivaracetam and UCB1244283
Method: single particle / : Mittal A, Martin MF, Ledecq M, Horanyi PS, Coleman JA

EMDB-71500:
Structure of Synaptic Vesicle Protein 2A Bound to UCB7361
Method: single particle / : Mittal A, Martin MF, Ledecq M, Horanyi PS, Coleman JA

EMDB-71501:
Structure of Synaptic Vesicle Protein 2A Bound to UCB-J
Method: single particle / : Mittal A, Martin MF, Ledecq M, Horanyi PS, Coleman JA

EMDB-71502:
Structure of Synaptic Vesicle Protein 2A Bound to Levetiracetam and UCB1244283
Method: single particle / : Mittal A, Martin MF, Ledecq M, Horanyi PS, Coleman JA

PDB-9ntc:
Structure of Synaptic Vesicle Protein 2A Bound to Brivaracetam and UCB1244283
Method: single particle / : Mittal A, Martin MF, Ledecq M, Horanyi PS, Coleman JA

PDB-9pc9:
Structure of Synaptic Vesicle Protein 2A Bound to UCB7361
Method: single particle / : Mittal A, Martin MF, Ledecq M, Horanyi PS, Coleman JA

PDB-9pcb:
Structure of Synaptic Vesicle Protein 2A Bound to UCB-J
Method: single particle / : Mittal A, Martin MF, Ledecq M, Horanyi PS, Coleman JA

EMDB-71039:
Subtomogram average of Munc13-1 C1-C2B-MUN-C2C F1176N/I1215N mutant 2D crystal between lipid bilayers
Method: subtomogram averaging / : Grushin K, Radhakrishnan A

EMDB-42521:
Structure of Lassa virus glycoprotein (Josiah) on the surface of VSVdG-Lassa-GPC vaccine particle.
Method: single particle / : Enriquez AS, Saphire EO

EMDB-48724:
Lecithin:Cholesterol Acyltransferase Bound to Apolipoprotein A-I dimer in HDL
Method: single particle / : Coleman B, Bedi S, Hill JH, Morris J, Manthei KA, Hart RC, He Y, Shah AS, Jerome WG, Vaisar T, Bornfeldt KE, Song H, Segrest JP, Heinecke JW, Aller SG, Tesmer JJG, Davidson S

PDB-9mxz:
Lecithin:Cholesterol Acyltransferase Bound to Apolipoprotein A-I dimer in HDL
Method: single particle / : Coleman B, Bedi S, Hill JH, Morris J, Manthei KA, Hart RC, He Y, Shah AS, Jerome WG, Vaisar T, Bornfeldt KE, Song H, Segrest JP, Heinecke JW, Aller SG, Tesmer JJG, Davidson S

EMDB-50326:
Betaglycan in complex with TGF-b1
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

EMDB-50333:
Betaglycan Orphan Domain (ratBGo) in complex with TGF-b1 and extracellular domain of TGFBRII
Method: single particle / : Wieteska L, Cherepanov P, Punch E, Hinck AP, Hill CS

EMDB-50519:
Zebrafish Betaglycan Orphan Domain (zfBGo) in complex with TGF-B3 and extracellular domains of TGFBRI and TGFBRII
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

EMDB-50524:
Zebrafish Betaglycan Orphan Domain (zfBGo) in complex with TGF-b1 and extracellular domain of TGFBRII
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

PDB-9fdy:
Betaglycan Orphan Domain (ratBGo) in complex with TGF-b1 and extracellular domain of TGFBRII
Method: single particle / : Wieteska L, Cherepanov P, Punch E, Hinck AP, Hill CS

PDB-9fk5:
Zebrafish Betaglycan Orphan Domain (zfBGo) in complex with TGF-B3 and extracellular domains of TGFBRI and TGFBRII
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

PDB-9fkp:
Zebrafish Betaglycan Orphan Domain (zfBGo) in complex with TGF-b1 and extracellular domain of TGFBRII
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

EMDB-42430:
Structure of synaptic vesicle protein 2B with padsevonil
Method: single particle / : Martin MF, Mittal A, Levin E, Adams C, Yang M, Ledecq M, Horanyi PS, Coleman JA

EMDB-42431:
Structure of synaptic vesicle protein 2A in complex with a nanobody
Method: single particle / : Mittal A, Martin MF, Levin E, Adams C, Yang M, Ledecq M, Horanyi PS, Coleman JA

EMDB-42432:
Structure of the synaptic vesicle protein 2A Luminal domain in complex with a nanobody
Method: single particle / : Mittal A, Martin MF, Levin E, Adams C, Yang M, Ledecq M, Horanyi PS, Coleman JA

PDB-8uo8:
Structure of synaptic vesicle protein 2B with padsevonil
Method: single particle / : Martin MF, Mittal A, Levin E, Adams C, Yang M, Ledecq M, Horanyi PS, Coleman JA

PDB-8uo9:
Structure of synaptic vesicle protein 2A in complex with a nanobody
Method: single particle / : Mittal A, Martin MF, Levin E, Adams C, Yang M, Ledecq M, Horanyi PS, Coleman JA

PDB-8uoa:
Structure of the synaptic vesicle protein 2A Luminal domain in complex with a nanobody
Method: single particle / : Mittal A, Martin MF, Levin E, Adams C, Yang M, Ledecq M, Horanyi PS, Coleman JA

EMDB-43736:
Umb1 umbrella toxin particle
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

EMDB-43737:
Umb1 umbrella toxin particle (local refinement of UmbB1 bound ALF of UmbC1 and UmbA1)
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

PDB-8w20:
Umb1 umbrella toxin particle
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

PDB-8w22:
Umb1 umbrella toxin particle (local refinement of UmbB1 bound ALF of UmbC1 and UmbA1)
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

EMDB-41269:
Structure of the human vesicular monoamine transporter 2 (VMAT2) bound to Tetrabenazine in an occluded conformation
Method: single particle / : Dalton MP, Coleman JA

PDB-8thr:
Structure of the human vesicular monoamine transporter 2 (VMAT2) bound to tetrabenazine in an occluded conformation
Method: single particle / : Dalton MP, Coleman JA

EMDB-23545:
Cryo-EM structure of the wild-type human serotonin transporter complexed with vilazodone, imipramine and 15B8 Fab
Method: single particle / : Yang D, Kalenderoglou IE

PDB-7lwd:
Cryo-EM structure of the wild-type human serotonin transporter complexed with vilazodone, imipramine and 15B8 Fab
Method: single particle / : Yang D, Kalenderoglou IE, Gouaux E, Coleman JA, Loland CJ

EMDB-22294:
Structure of the p53/RNA polymerase II assembly
Method: single particle / : Liou SH, Singh S

PDB-6xre:
Structure of the p53/RNA polymerase II assembly
Method: single particle / : Liou SH, Singh S, Singer RH, Coleman RA, Liu W

EMDB-10000:
Lateral flagellar motor from Plesiomonas shigelloidea
Method: subtomogram averaging / : Ferreira JL, Beeby M

EMDB-4999:
Flagellar motor from Bordetella bronchiseptica
Method: subtomogram averaging / : Ferreira JL, Beeby M

EMDB-11547:
Cryo-EM structure of apo MlaFEDB
Method: single particle / : Dong CJ, Dong HH

EMDB-11548:
Cryo-EM structure of MlaFEDB in complex with phospholipid
Method: single particle / : Dong CJ, Dong HH

EMDB-11549:
Cryo-EM structure of MlaFEDB in complex with ADP
Method: single particle / : Dong CJ, Dong HH

EMDB-11555:
Cryo-EM structure of MlaFEDB in complex with AMP-PNP
Method: single particle / : Dong CJ, Dong HH

PDB-6zy2:
Cryo-EM structure of apo MlaFEDB
Method: single particle / : Dong CJ, Dong HH

PDB-6zy3:
Cryo-EM structure of MlaFEDB in complex with phospholipid
Method: single particle / : Dong CJ, Dong HH

PDB-6zy4:
Cryo-EM structure of MlaFEDB in complex with ADP
Method: single particle / : Dong CJ, Dong HH

PDB-6zy9:
Cryo-EM structure of MlaFEDB in complex with AMP-PNP
Method: single particle / : Dong CJ, Dong HH

EMDB-21368:
Cryo-EM structure of the wild-type human serotonin transporter complexed with paroxetine and 8B6 Fab
Method: single particle / : Coleman JA, Navratna V

EMDB-21369:
Cryo-EM structure of the wild-type human serotonin transporter complexed with Br-paroxetine and 8B6 Fab
Method: single particle / : Coleman JA, Navratna V

EMDB-21370:
Cryo-EM structure of the wild-type human serotonin transporter complexed with I-paroxetine and 8B6 Fab
Method: single particle / : Coleman JA, Navratna V

PDB-6vrh:
Cryo-EM structure of the wild-type human serotonin transporter complexed with paroxetine and 8B6 Fab
Method: single particle / : Coleman JA, Navratna V, Yang D

PDB-6vrk:
Cryo-EM structure of the wild-type human serotonin transporter complexed with Br-paroxetine and 8B6 Fab
Method: single particle / : Coleman JA, Navratna V, Yang D

PDB-6vrl:
Cryo-EM structure of the wild-type human serotonin transporter complexed with I-paroxetine and 8B6 Fab
Method: single particle / : Coleman JA, Navratna V, Yang D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more