[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,638 items for (author: cho & se)

EMDB-51635:
P116 from Mycoplasma pneumoniae in complex with mild growth suppressor monoclonal antibody
Method: single particle / : Vizarraga D, Marcos Silva M, Martin Romero J, Guerra P, Fita I, Pinyol J

PDB-9gvg:
P116 from Mycoplasma pneumoniae in complex with mild growth suppressor monoclonal antibody
Method: single particle / : Vizarraga D, Marcos Silva M, Martin Romero J, Guerra P, Fita I, Pinyol J

EMDB-70143:
Cryo-EM structure of human SWELL1-PSA heterocomplex
Method: single particle / : Hagino T, Twomey EC, Qiu Z

PDB-9o5k:
Cryo-EM structure of human SWELL1-PSA heterocomplex
Method: single particle / : Hagino T, Twomey EC, Qiu Z

EMDB-73821:
HECT domain of NEDD4-2 complex with a targeted nanobody, nb.C11
Method: single particle / : Afriyie E, Clarke OB

PDB-9z5q:
HECT domain of NEDD4-2 complex with a targeted nanobody, nb.C11
Method: single particle / : Afriyie E, Clarke OB

EMDB-46884:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-46914:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dhw:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dim:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-53380:
cryo-EM structure of TolQR conformation2 in SMA nanodiscs
Method: single particle / : Luo Y, Shen C

EMDB-53394:
cryo-EM structure of TolQRA in nanodiscs
Method: single particle / : Luo Y, Shen C

EMDB-70088:
cryo-EM structure of TolQR conformation1 in SMA nanodiscs
Method: single particle / : Luo YB, Shen CR

PDB-9o40:
cryo-EM structure of TolQR conformation1 in SMA nanodiscs
Method: single particle / : Luo YB, Shen CR

PDB-9quq:
cryo-EM structure of TolQR conformation2 in SMA nanodiscs
Method: single particle / : Luo Y, Shen C

PDB-9qvd:
cryo-EM structure of TolQRA in nanodiscs
Method: single particle / : Luo Y, Shen C

EMDB-51273:
Cryo-EM structure of Vibrio cholerae RNA polymerase holoenzyme bound to an ompU promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51274:
Cryo-EM structure of Vibrio cholerae RNA polymerase holoenzyme bound to an ompU promoter DNA fragment and 5-mer RNA
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51275:
Cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with ToxR transcription factor and ompU promoter DNA
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51276:
Cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with TcpP transcription factor and a toxT promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51277:
Cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with ToxR and TcpP transcription factors and a toxT promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51278:
Cryo-EM structure of Vibrio cholerae RNA polymerase dimer with ToxR and TcpP transcription factors and a toxT promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51774:
Consensus map of the cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with ToxR transcription factor and bound to an ompU promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51775:
Focused map #1 of the cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with ToxR transcription factor and bound to an ompU promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51776:
Focused map #2 of the cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with ToxR transcription factor and bound to an ompU promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51948:
Consensus map of the cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with TcpP transcription factor and bound to a toxT promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51949:
Focused map #1 of the cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with TcpP transcription factor and bound to a toxT promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51950:
Focused map #2 of the cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with TcpP transcription factor and bound to a toxT promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51955:
Consensus map of the cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with ToxR and TcpP transcription factors and bound to a toxT promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51956:
Focused map #1 of the cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with ToxR and TcpP transcription factors and bound to a toxT promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51958:
Focused map #2 of the cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with ToxR and TcpP transcription factors and bound to a toxT promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-72108:
Cryo-EM Structure of HIV-1 BG505DS-SOSIP.664 Env Trimer Bound to DFPH-a.01_10R59P_LC Fab
Method: single particle / : Pletnev S, Kwong P, Fischer E

PDB-9q0w:
Cryo-EM Structure of HIV-1 BG505DS-SOSIP.664 Env Trimer Bound to DFPH-a.01_10R59P_LC Fab
Method: single particle / : Pletnev S, Kwong P

EMDB-51903:
Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA
Method: single particle / : Nguyen TT, Hashem Y, Rocha REO, Boissier F, Qian SB, Jia L, Uematsu S, Gu Y, Shi S

EMDB-51911:
Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA
Method: single particle / : Nguyen TT, Hashem Y, Rocha REO, Boissier F, Qian SB, Jia L, Uematsu S, Gu Y, Shi S

PDB-9h6y:
Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA
Method: single particle / : Nguyen TT, Hashem Y, Rocha REO, Boissier F, Qian SB, Jia L, Uematsu S, Gu Y, Shi S

PDB-9h74:
Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA
Method: single particle / : Nguyen TT, Hashem Y, Rocha REO, Boissier F, Qian SB, Jia L, Uematsu S, Gu Y, Shi S

EMDB-70867:
DDB1-CRBN with Ikaros(ZF2) and DEG-47: composite map and model submission
Method: single particle / : Rizvi Z, Lander GC

EMDB-48548:
SARS-CoV-2 S2 monomer in complex with R125-61 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

EMDB-48549:
SARS-CoV-2 S2 monomer in complex with NICA01B-1113 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

EMDB-48550:
SARS-CoV-2 S2 monomer in complex with NICA01A-1401 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

PDB-9mr1:
SARS-CoV-2 S2 monomer in complex with R125-61 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

PDB-9mr2:
SARS-CoV-2 S2 monomer in complex with NICA01A-1401 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

EMDB-70458:
Cryo-EM structure of human full-length XPO1 (unliganded)
Method: single particle / : Wing CE, Fung HYJ, Chook YM

EMDB-70459:
Cryo-EM structure of human full-length XPO1 conjugated with selinexor
Method: single particle / : Wing CE, Fung HYJ, Chook YM

EMDB-70460:
Cryo-EM structure of human exportin-1 conjugated with selinexor and bound to yeast RAN-GTP and human ASB8-ELOB/C
Method: single particle / : Wing CE, Fung HYJ, Chook YM

EMDB-70461:
Cryo-EM structure of human exportin-1 conjugated with KPT-185 and bound to human ASB8-ELOB/C
Method: single particle / : Wing CE, Fung HYJ, Chook YM

EMDB-70462:
Cryo-EM structure of human exportin-1 conjugated with selinexor and bound to human ASB8(R197A)-ELOB/C
Method: single particle / : Wing CE, Fung HYJ, Chook YM

EMDB-70463:
Cryo-EM structure of human exportin-1 conjugated with KPT-127 and bound to human ASB8-ELOB/C
Method: single particle / : Wing CE, Fung HYJ, Chook YM

EMDB-70464:
Cryo-EM structure of human exportin-1 conjugated with KPT-UTSW1 and bound to human ASB8-ELOB/C
Method: single particle / : Wing CE, Fung HYJ, Chook YM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more