[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,704 items for (author: cho & se)

EMDB-72725:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9ya9:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-74451:
Cryo-EM structure of human UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase (DPAGT1) in complex with APPB, composite map
Method: single particle / : Kirsh JM, Ochoa JM, Soroush-Pejrimovsky MT, Kaudeer BY, Clemons WM

EMDB-74452:
Cryo-EM structure of Hydrogenivirga sp. MraY in complex with APPB
Method: single particle / : Kaudeer BY, Clemons WM

EMDB-75257:
Cryo-EM structure of human UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase (DPAGT1) in complex with APPB, consensus map
Method: single particle / : Kirsh JM, Ochoa JM, Soroush-Pejrimovsky MT, Kaudeer BY, Clemons WM

EMDB-75258:
Cryo-EM structure of human UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase (DPAGT1) in complex with APPB, Chain A map
Method: single particle / : Kirsh JM, Ochoa JM, Soroush-Pejrimovsky MT, Kaudeer BY, Clemons WM

EMDB-75259:
Cryo-EM structure of human UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase (DPAGT1) in complex with APPB, Chain B map
Method: single particle / : Kirsh JM, Ochoa JM, Soroush-Pejrimovsky MT, Kaudeer BY, Clemons WM

PDB-9znn:
Cryo-EM structure of human UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase (DPAGT1) in complex with APPB
Method: single particle / : Kirsh JM, Ochoa JM, Soroush-Pejrimovsky MT, Kaudeer BY, Clemons WM

PDB-9zno:
Cryo-EM structure of Hydrogenivirga sp. MraY in complex with APPB
Method: single particle / : Kaudeer BY, Clemons WM

EMDB-49942:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 24
Method: single particle / : Collier P, Zheng X, Ford M, Weiss M, Aversa R, Chen D, Li K, Growney JD, Yang A, Sathappa M, Breitkopf SB, Enerson B, Sawant R, Su L, Howarth L, Liang T, Paul A, Sharma K, Williams J, Kwiatkowski NP

PDB-9nyr:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 24
Method: single particle / : Collier P, Zheng X, Ford M, Weiss M, Aversa R, Chen D, Li K, Growney JD, Yang A, Sathappa M, Breitkopf SB, Enerson B, Sawant R, Su L, Howarth L, Liang T, Paul A, Sharma K, Williams J, Kwiatkowski NP

EMDB-70338:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Method: single particle / : Galkin A, Pozharski E

EMDB-71715:
Cryo-EM structure of modified JEV virus E protein dimer
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-71727:
West Nile virus E protein
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-71728:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Method: single particle / : Galkin A, Pozharski E, Li Y

PDB-9od2:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Method: single particle / : Galkin A, Pozharski E

PDB-9pl9:
Cryo-EM structure of modified JEV virus E protein dimer
Method: single particle / : Galkin A, Pozharski E, Li Y

PDB-9pm6:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-70277:
The structure of TdfH from Neisseria gonorrhoeae
Method: single particle / : Bera A, Noinaj N

PDB-9oaa:
The structure of TdfH from Neisseria gonorrhoeae
Method: single particle / : Bera A, Noinaj N

EMDB-47765:
Week 26 C3V5, gp41-GH and gp41-base epitope polyclonal antibodies from participant 202 in complex with ConM SOSIP
Method: single particle / : Lin RN, Torres JL, Tran AS, Ozorowski G, Ward AB

EMDB-54112:
CryoEM structure of the microtubule-AKAP13 C1 domain complex
Method: single particle / : Giono M, Choi SR, Filipcik P, Steinmetz MO

EMDB-51635:
P116 from Mycoplasma pneumoniae in complex with mild growth suppressor monoclonal antibody
Method: single particle / : Vizarraga D, Marcos Silva M, Martin Romero J, Guerra P, Fita I, Pinyol J

PDB-9gvg:
P116 from Mycoplasma pneumoniae in complex with mild growth suppressor monoclonal antibody
Method: single particle / : Vizarraga D, Marcos Silva M, Martin Romero J, Guerra P, Fita I, Pinyol J

EMDB-71766:
Cryo-EM structure of J601-1B2 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD

EMDB-71767:
Cryo-EM structure of J601-A6 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71772:
Cryo-EM structure of K001-A1 Fab in complex with HIV-1 459C-OPT RnS DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71781:
Cryo-EM structure of HIV-1 459C-WT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71782:
Cryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pni:
Cryo-EM structure of J601-1B2 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD

PDB-9pnn:
Cryo-EM structure of J601-A6 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pnu:
Cryo-EM structure of K001-A1 Fab in complex with HIV-1 459C-OPT RnS DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pq2:
Cryo-EM structure of HIV-1 459C-WT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pq3:
Cryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-51273:
Cryo-EM structure of Vibrio cholerae RNA polymerase holoenzyme bound to an ompU promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51274:
Cryo-EM structure of Vibrio cholerae RNA polymerase holoenzyme bound to an ompU promoter DNA fragment and 5-mer RNA
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51275:
Cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with ToxR transcription factor and ompU promoter DNA
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51276:
Cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with TcpP transcription factor and a toxT promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51277:
Cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with ToxR and TcpP transcription factors and a toxT promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51278:
Cryo-EM structure of Vibrio cholerae RNA polymerase dimer with ToxR and TcpP transcription factors and a toxT promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51774:
Consensus map of the cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with ToxR transcription factor and bound to an ompU promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51775:
Focused map #1 of the cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with ToxR transcription factor and bound to an ompU promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51776:
Focused map #2 of the cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with ToxR transcription factor and bound to an ompU promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51948:
Consensus map of the cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with TcpP transcription factor and bound to a toxT promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51949:
Focused map #1 of the cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with TcpP transcription factor and bound to a toxT promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51950:
Focused map #2 of the cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with TcpP transcription factor and bound to a toxT promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51955:
Consensus map of the cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with ToxR and TcpP transcription factors and bound to a toxT promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51956:
Focused map #1 of the cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with ToxR and TcpP transcription factors and bound to a toxT promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

EMDB-51958:
Focused map #2 of the cryo-EM structure of Vibrio cholerae RNA polymerase Transcription Activation Complex with ToxR and TcpP transcription factors and bound to a toxT promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

PDB-9gdo:
Cryo-EM structure of Vibrio cholerae RNA polymerase holoenzyme bound to an ompU promoter DNA fragment
Method: single particle / : Alcaide-Jimenez A, Baudin F, Canals A, Machon C, Murciano B, Fabrega-Ferrer M, Bantysh O, Perez-Luque R, Krukonis ES, Muller CW, Coll M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more