[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 76 items for (author: chaves-sanjuan & a)

EMDB-50272:
Additional cryo-EM structure of cardiac amyloid AL59 - mixed polymorph

PDB-9fac:
Additional cryo-EM structure of cardiac amyloid AL59 - mixed polymorph

EMDB-16860:
Ivabradine bound to HCN4 channel

PDB-8ofi:
Ivabradine bound to HCN4 channel

EMDB-50271:
Additional cryo-EM structure of cardiac amyloid AL59 - bent polymorph

PDB-9fab:
Additional cryo-EM structure of cardiac amyloid AL59 - bent polymorph

EMDB-51031:
Cryo-electron tomogram of AL59 amyloids interacting with collagen VI

EMDB-51032:
Cryo-electron tomogram of AL59 amyloids interacting with collagen VI

EMDB-51033:
Cryo-electron tomogram of AL59 amyloids interacting with collagen VI

EMDB-51038:
Cryo-electron tomogram of AL59 amyloids interacting with collagen VI

EMDB-18973:
Cryo-EM structure of Human SHMT1

PDB-8r7h:
Cryo-EM structure of Human SHMT1

EMDB-18689:
Maps of Collagen VI half- and full-beads

EMDB-50270:
Cryo-EM structure of cardiac collagen-associated amyloid AL59

PDB-9faa:
Cryo-EM structure of cardiac collagen-associated amyloid AL59

EMDB-16931:
NAPE-PLD dimer bound to a nanodisc

EMDB-16932:
NAPE-PLD bound to a nanodisc

EMDB-50423:
SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein in complex with the single chain fragment scFv76

EMDB-50424:
SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein in complex with the single chain fragment scFv76 (focused refinement)

EMDB-50425:
SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein, with two RBD up and one RBD down. Single chain fragment scFv76 bound to the two RBD up

EMDB-50426:
SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein, with two RBD up and one RBD down.

PDB-9fgt:
SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein in complex with the single chain fragment scFv76 (focused refinement)

EMDB-50419:
SARS-CoV-2 (wuhan variant) Spike protein in complex with the single chain fragment scFv41N

EMDB-50427:
SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein in complex with the single chain fragment scFv76-77

EMDB-50428:
SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein in complex with the single chain fragment scFv76-77 (focused refinement)

EMDB-50429:
SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein, with two RBD up and one down. The single chain fragment scFv76-77 is bound to the two RBD up.

PDB-9fgu:
SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein in complex with the single chain fragment scFv76-77 (focused refinement)

EMDB-50417:
SARS-CoV-2 (wuhan variant) Spike protein in complex with the single chain fragment scFv76-77

EMDB-50420:
SARS-CoV-2 (wuhan variant) Spike protein in complex with the single chain fragment scFv41N (focused refinement)

EMDB-50421:
SARS-CoV-2 (wuhan variant) Spike protein, with three RBD up, in complex with one molecule of single chain fragment scFv41N

EMDB-50422:
SARS-CoV-2 (wuhan variant) Spike protein, with two RBD up and one RBD down. Single chain fragment scFv41N bound to one RDB up and the RBD down

PDB-9fgs:
SARS-CoV-2 (wuhan variant) Spike protein in complex with the single chain fragment scFv41N (focused refinement)

EMDB-50418:
SARS-CoV-2 (wuhan variant) Spike protein in complex with the single chain fragment scFv76-77 (focused refinement)

PDB-9fgr:
SARS-CoV-2 (wuhan variant) Spike protein in complex with the single chain fragment scFv76-77 (focused refinement)

EMDB-16780:
CryoEM structure of AL55 amyloid fibrils extracted from the kidney of an AL amyloidosis patient.

PDB-8cpe:
CryoEM structure of AL55 amyloid fibrils extracted from the kidney of an AL amyloidosis patient.

EMDB-14778:
Cryo-EM structure of holo-PdxR from Bacillus clausii bound to its target DNA in the half-closed conformation

EMDB-14801:
Cryo-EM structure of holo-PdxR from Bacillus clausii bound to its target DNA in the closed conformation, C2 symmetry

EMDB-14852:
Cryo-EM structure of holo-PdxR from Bacillus clausii bound to its target DNA in the closed conformation, C1 symmetry

EMDB-14960:
Cryo-EM structure of holo-PdxR from Bacillus clausii bound to its target DNA in the open conformation

PDB-7zla:
Cryo-EM structure of holo-PdxR from Bacillus clausii bound to its target DNA in the half-closed conformation

PDB-7zn5:
Cryo-EM structure of holo-PdxR from Bacillus clausii bound to its target DNA in the closed conformation, C2 symmetry.

PDB-7zpa:
Cryo-EM structure of holo-PdxR from Bacillus clausii bound to its target DNA in the closed conformation, C1 symmetry

PDB-7zth:
Cryo-EM structure of holo-PdxR from Bacillus clausii bound to its target DNA in the open conformation

EMDB-15065:
Cryo-EM structure of the Human SHMT1-RNA complex

PDB-8a11:
Cryo-EM structure of the Human SHMT1-RNA complex

EMDB-14738:
Cryo-EM structure of hnRNPDL amyloid fibrils

PDB-7zir:
Cryo-EM structure of hnRNPDL amyloid fibrils

EMDB-14726:
Cryo-EM structure of ex vivo AA amyloid from renal tissue of a short hair cat deceased in a shelter

PDB-7zh7:
Cryo-EM structure of ex vivo AA amyloid from renal tissue of a short hair cat deceased in a shelter

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more