[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 721 items for (author: chand & d)

EMDB-72206:
Cryo-EM structure of PGT121 Fab and Rhesus macaque Ab4 Fab in complex with HIV-1 Env trimer BG505 SOSIP.664
Method: single particle / : Chandravanshi M, Tolbert WD, Pazgier M

PDB-9q3s:
Cryo-EM structure of PGT121 Fab and Rhesus macaque Ab4 Fab in complex with HIV-1 Env trimer BG505 SOSIP.664
Method: single particle / : Chandravanshi M, Tolbert WD, Pazgier M

EMDB-54440:
Cellular environment of FIB-sectioned yeast cell overexpressing Brr6(I149D)
Method: electron tomography / : Fischer JS, Wojtynek M, Kumar A, Baird HJM, Radilova K, Maslennikova D, Ramachandran K, Becker AN, Agote Aran A, Loffreda A, Kralt A, Jagannathan M, Dey G, Kutay U, Vanni S, Weis K

EMDB-72094:
Cryo-EM structure of PGT121 Fab and Rhesus macaque Ab76 Fab in complex with HIV-1 Env trimer BG505 SOSIP.664
Method: single particle / : Chandravanshi M, Tolbert WD, Pazgier M

PDB-9q09:
Cryo-EM structure of PGT121 Fab and Rhesus macaque Ab76 Fab in complex with HIV-1 Env trimer BG505 SOSIP.664
Method: single particle / : Chandravanshi M, Tolbert WD, Pazgier M

EMDB-71975:
Human apo HCN1 nanodisc
Method: single particle / : Chinn A, Chanda B

EMDB-73857:
Human HCN1 in complex with cAMP in nanodisc
Method: single particle / : Chinn A, Chanda B

PDB-9pxn:
Human apo HCN1 nanodisc
Method: single particle / : Chinn A, Chanda B

PDB-9z6t:
Human HCN1 in complex with cAMP in nanodisc
Method: single particle / : Chinn A, Chanda B

EMDB-71745:
Composite map of hypomethylated 80S ribosome treated with hygromycin B
Method: single particle / : Zhao Y, Li H

PDB-9pn5:
Composite map of hypomethylated 80S ribosome treated with hygromycin B
Method: single particle / : Zhao Y, Li H

EMDB-71831:
Bacillus subtilis teneurin-like protein
Method: single particle / : Low YS, Landsberg MJL

PDB-9pt5:
Bacillus subtilis teneurin-like protein
Method: single particle / : Low YS, Landsberg MJL

EMDB-55586:
Local refinement of RNA-free assembled Langya virus N-core
Method: single particle / : Jayachandran RB, Quignon E, Renner M

EMDB-55587:
Helical reconstruction of Langya henipavirus N-core nucleocapsid-like complex
Method: helical / : Jayachandran RB, Quignon E, Renner M

EMDB-55588:
Langya henipavirus Ncore 13mer Ring
Method: single particle / : Jayachandran RB, Quignon E, Renner M

PDB-9t5k:
Local refinement of RNA-free assembled Langya virus N-core
Method: single particle / : Jayachandran RB, Quignon E, Renner M

PDB-9t5l:
Helical reconstruction of Langya henipavirus N-core nucleocapsid-like complex
Method: helical / : Jayachandran RB, Quignon E, Renner M

EMDB-70477:
70S global refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site S-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70050:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl
Method: single particle / : Majumdar C, Kent A, Hamlish N, Zhu C, Cate J

EMDB-70051:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl
Method: single particle / : Majumdar C, Cate JHD

EMDB-70052:
50S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site S-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70054:
30S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site S-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70478:
70S global refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site R-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

PDB-9o2x:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl
Method: single particle / : Majumdar C, Kent A, Hamlish N, Zhu C, Cate J

PDB-9o2y:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl
Method: single particle / : Majumdar C, Cate JHD

EMDB-70055:
50S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site R-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70056:
30S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site R-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-52847:
Structure of Teneurin-Like Protein (TLP)
Method: single particle / : Raoelijaona F, Zhou J, El-Omari K, Lowe ED, Seiradake E

PDB-9ifo:
Structure of Teneurin-Like Protein (TLP)
Method: single particle / : Raoelijaona F, Zhou J, El-Omari K, Lowe ED, Seiradake E

EMDB-47752:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

EMDB-47805:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

PDB-9e93:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

PDB-9e9v:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

EMDB-71776:
CryoEM structure of delta opioid receptor bound to G proteins and Naltrindole
Method: single particle / : Fay JF, Che T

EMDB-71777:
CryoEM structure of delta opioid receptor bound to G proteins and naltrexone
Method: single particle / : Fay JF, Che T

EMDB-71778:
CryoEM structure of delta opioid receptor bound to G proteins and met-enkephalin
Method: single particle / : Fay JF, Che T

EMDB-71779:
CryoEM structure of delta opioid receptor bound to G proteins and SNC80
Method: single particle / : Fay JF, Che T

EMDB-71780:
CryoEM structure of delta opioid receptor bound to G proteins and ADL5859
Method: single particle / : Fay JF, Che T

PDB-9ppw:
CryoEM structure of delta opioid receptor bound to G proteins and Naltrindole
Method: single particle / : Fay JF, Che T

PDB-9ppx:
CryoEM structure of delta opioid receptor bound to G proteins and naltrexone
Method: single particle / : Fay JF, Che T

PDB-9ppy:
CryoEM structure of delta opioid receptor bound to G proteins and met-enkephalin
Method: single particle / : Fay JF, Che T

PDB-9ppz:
CryoEM structure of delta opioid receptor bound to G proteins and SNC80
Method: single particle / : Fay JF, Che T

PDB-9pq0:
CryoEM structure of delta opioid receptor bound to G proteins and ADL5859
Method: single particle / : Fay JF, Che T

EMDB-72207:
Cryo EM structure of elk ACE2 in complex with SARS-CoV-2 spike trimer
Method: single particle / : Ye K, Tao YJ, Wan XF

EMDB-72208:
Cryo EM structure of elk ACE2 in complex with XBB 1.5 spike RBD
Method: single particle / : Ye K, Tao YJ, Wan XF

PDB-9q3u:
Cryo EM structure of elk ACE2 in complex with SARS-CoV-2 spike trimer
Method: single particle / : Ye K, Tao YJ, Wan XF

PDB-9q3v:
Cryo EM structure of elk ACE2 in complex with XBB 1.5 spike RBD
Method: single particle / : Ye K, Tao YJ, Wan XF

EMDB-49835:
SARS-CoV-2 BA.1 S6P (HexaPro) + COV2-3835 Fab Local Refinement Map (RBD + Fv)
Method: single particle / : Ramamohan AR, Johnson NV, McLellan JS

PDB-9nvg:
Structure of SARS-CoV-2 BA.1 spike RBD bound to COV2-3835 Fab
Method: single particle / : Ramamohan AR, Johnson NV, McLellan JS

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more