[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 373 items for (author: borgnia & m)

EMDB-44590:
SARS-CoV-2 endoribonuclease Nsp15 bound to dsRNA with 1 nucleotide bulge
Method: single particle / : Wright ZM, Butay KJ, Krahn JM, Borgnia MJ, Stanley RE

PDB-9bih:
SARS-CoV-2 endoribonuclease Nsp15 bound to dsRNA with 1 nucleotide bulge
Method: single particle / : Wright ZM, Butay KJ, Krahn JM, Borgnia MJ, Stanley RE

EMDB-50023:
mouse alpha-synuclein
Method: helical / : Tatli M, Stahlberg H, Kolla R, Nazarov S, Weil MT, Schondorf DC, Geist D, Reinhardt P, Ehrnhoefer DE, Gasparini L, Lashuel HA

PDB-9ewv:
mouse alpha-synuclein
Method: helical / : Tatli M, Stahlberg H

EMDB-42842:
A Mitochondrial Replication Complex: PolG/PolG2 Bound to DNA in complex with the Single-Stranded Binding Protein (mtSSB)
Method: single particle / : Riccio AA, Bouvette J, Borgnia MJ, Copeland WC

EMDB-43269:
Cryo-EM structure of heparosan synthase 2 from Pasteurella multocida with polysaccharide in the GlcNAc-T active site
Method: single particle / : Krahn JM, Pedersen LC, Liu J, Stancanelli E, Borgnia M, Vivarette E

PDB-8viw:
Cryo-EM structure of heparosan synthase 2 from Pasteurella multocida with polysaccharide in the GlcNAc-T active site
Method: single particle / : Krahn JM, Pedersen LC, Liu J, Stancanelli E, Borgnia M, Vivarette E

EMDB-42979:
Engaged conformation of the human mitochondrial DNA polymerase gamma bound to DNA
Method: single particle / : Riccio AA, Krahn JM, Bouvette J, Borgnia JM, Copeland WC

EMDB-42980:
Human mitochondrial DNA polymerase gamma bound to a replication fork in an open conformation
Method: single particle / : Riccio AA, Krahn JM, Bouvette J, Borgnia MJ, Copeland WC

EMDB-42982:
Human mitochondrial DNA polymerase catalytic subunit, PolG, in an APO conformation
Method: single particle / : Riccio AA, Brannon AJ, Krahn JM, Bouvette J, Borgnia JM, Copeland WC

EMDB-42984:
Active conformation of DNA polymerase gamma bound to DNA
Method: single particle / : Riccio AA, Krahn JM, Bouvette J, Borgnia JM, Copeland WC

PDB-8v54:
Engaged conformation of the human mitochondrial DNA polymerase gamma bound to DNA
Method: single particle / : Riccio AA, Krahn JM, Bouvette J, Borgnia JM, Copeland WC

PDB-8v55:
Human mitochondrial DNA polymerase gamma bound to a replication fork in an open conformation
Method: single particle / : Riccio AA, Krahn JM, Bouvette J, Borgnia MJ, Copeland WC

PDB-8v5d:
Human mitochondrial DNA polymerase catalytic subunit, PolG, in an APO conformation
Method: single particle / : Riccio AA, Brannon AJ, Krahn JM, Bouvette J, Borgnia JM, Copeland WC

PDB-8v5r:
Active conformation of DNA polymerase gamma bound to DNA
Method: single particle / : Riccio AA, Krahn JM, Bouvette J, Borgnia JM, Copeland WC

EMDB-41730:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Ribavirin
Method: single particle / : Wright NJ, Lee SY

EMDB-41731:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in MSP2N2 nanodiscs, apo state
Method: single particle / : Wright NJ, Lee SY

EMDB-41732:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with GS-441524, consensus reconstruction
Method: single particle / : Wright NJ, Lee SY

EMDB-41733:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with GS-441524, subset reconstruction
Method: single particle / : Wright NJ, Lee SY

EMDB-41734:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with N-hydroxycytidine
Method: single particle / : Wright NJ, Lee SY

EMDB-41735:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with PSI-6206
Method: single particle / : Wright NJ, Lee SY

EMDB-41736:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT1-INT1-INT1 conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41737:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT1-INT1-INT3 conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41738:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 2, INT2-INT2-INT2 conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41739:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 2, INT2-INT1-INT1 conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41740:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, consensus reconstruction
Method: single particle / : Wright NJ, Lee SY

EMDB-41741:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, OFS-OFS-OFS conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41742:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, OFS-OFS-INT1 conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41743:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, OFS-OFS-INT3 conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41744:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT1-INT1-OFS conformation (from ensemble analysis)
Method: single particle / : Wright NJ, Lee SY

EMDB-41745:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT3-INT3-OFS conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41746:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT3-INT3-INT1 conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41747:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT3-INT3-INT3 conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41748:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, OFS-INT1-INT3 (clockwise) conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41749:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, OFS-INT1-INT3 (counterclockwise) conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41750:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 2, INT2-INT2-INT1 conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41751:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 2, INT1-INT1-INT1 conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41752:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 2, consensus reconstruction
Method: single particle / : Wright NJ, Lee SY

EMDB-41755:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT1-INT1-OFS conformation (3DVA analysis)
Method: single particle / : Wright NJ, Lee SY

PDB-8tz1:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Ribavirin
Method: single particle / : Wright NJ, Lee SY

PDB-8tz2:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in MSP2N2 nanodiscs, apo state
Method: single particle / : Wright NJ, Lee SY

PDB-8tz3:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with GS-441524, consensus reconstruction
Method: single particle / : Wright NJ, Lee SY

PDB-8tz4:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with GS-441524, subset reconstruction
Method: single particle / : Wright NJ, Lee SY

PDB-8tz5:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with N-hydroxycytidine
Method: single particle / : Wright NJ, Lee SY

PDB-8tz6:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with PSI-6206
Method: single particle / : Wright NJ, Lee SY

PDB-8tz7:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT1-INT1-INT1 conformation
Method: single particle / : Wright NJ, Lee SY

PDB-8tz8:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT1-INT1-INT3 conformation
Method: single particle / : Wright NJ, Lee SY

PDB-8tz9:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 2, INT2-INT2-INT2 conformation
Method: single particle / : Wright NJ, Lee SY

PDB-8tza:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 2, INT2-INT1-INT1 conformation
Method: single particle / : Wright NJ, Lee SY

PDB-8tzd:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT1-INT1-OFS conformation (3DVA analysis)
Method: single particle / : Wright NJ, Lee SY

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more