[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 421 items for (author: borgnia & m)

EMDB-48123:
Cryo-EM Map of Brucella Abortus Lumazine Synthase (BLS) Engineered with Shiga Toxin I subunit B (Stx1B) Complexed with Equine Polyclonal Fab Fragments (Complex 1)
Method: single particle / : Cristofalo AE, Sharma A, Cerutti ML, Sharma K, Melero R, Zylberman V, Goldbaum FA, Borgnia MJ, Otero LH

EMDB-48124:
Cryo-EM Map of Brucella Abortus Lumazine Synthase (BLS) Engineered with Shiga Toxin I subunit B (Stx1B) Complexed with Equine Polyclonal Fab Fragments (Complex 2)
Method: single particle / : Cristofalo AE, Sharma A, Cerutti ML, Sharma K, Melero R, Zylberman V, Goldbaum FA, Borgnia MJ, Otero LH

EMDB-48125:
Cryo-EM Map of Brucella Abortus Lumazine Synthase (BLS) Engineered with Shiga Toxin I subunit B (Stx1B) Complexed with Equine Polyclonal Fab Fragments (Complex 3)
Method: single particle / : Cristofalo AE, Sharma A, Cerutti ML, Sharma K, Melero R, Zylberman V, Goldbaum FA, Borgnia MJ, Otero LH

EMDB-48126:
Cryo-EM Map of Brucella Abortus Lumazine Synthase (BLS) Engineered with Shiga Toxin II subunit B (Stx2B) Complexed with Equine Polyclonal Fab Fragments (Complex 1)
Method: single particle / : Cristofalo AE, Sharma A, Cerutti ML, Sharma K, Melero R, Zylberman V, Goldbaum FA, Borgnia MJ, Otero LH

EMDB-48127:
Cryo-EM Map of Brucella Abortus Lumazine Synthase (BLS) Engineered with Shiga Toxin II subunit B (Stx2B) Complexed with Equine Polyclonal Fab Fragments (Complex 2)
Method: single particle / : Cristofalo AE, Sharma A, Cerutti ML, Sharma K, Melero R, Zylberman V, Goldbaum FA, Borgnia MJ, Otero LH

EMDB-48128:
Cryo-EM Map of Brucella Abortus Lumazine Synthase (BLS) Engineered with Shiga Toxin II subunit B (Stx2B) Complexed with Equine Polyclonal Fab Fragments (Complex 3)
Method: single particle / : Cristofalo AE, Sharma A, Cerutti ML, Sharma K, Melero R, Zylberman V, Goldbaum FA, Borgnia MJ, Otero LH

EMDB-48129:
Cryo-EM Map of Brucella Abortus Lumazine Synthase (BLS) Engineered with Shiga Toxin II subunit B (Stx2B) Complexed with Equine Polyclonal Fab Fragments (Complex 4)
Method: single particle / : Cristofalo AE, Sharma A, Cerutti ML, Sharma K, Melero R, Zylberman V, Goldbaum FA, Borgnia MJ, Otero LH

EMDB-48130:
Cryo-EM Map of Brucella Abortus Lumazine Synthase (BLS) Engineered with Shiga Toxin II subunit B (Stx2B) Complexed with Equine Polyclonal Fab Fragments (Complex 5)
Method: single particle / : Cristofalo AE, Sharma A, Cerutti ML, Sharma K, Melero R, Zylberman V, Goldbaum FA, Borgnia MJ, Otero LH

EMDB-70103:
Cryo-EM Structure of the Arabidopsis GA3-GID1A-RGA Complex
Method: single particle / : Dahal P, Sharma K, Borgnia M, Zhou P

EMDB-70104:
Cryo-EM Structure of the Arabidopsis GA3-GID1A-RGA-SLY1-ASK1 Complex
Method: single particle / : Dahal P, Sharma K, Borgnia M, Zhou P

EMDB-70105:
Cryo-EM Non-Uniform Refinement Map of the Arabidopsis GA3-GID1A-RGA-SLY1-ASK1 Complex
Method: single particle / : Dahal P, Sharma K, Borgnia M, Zhou P

EMDB-70106:
Cryo-EM Local Refinement Map (GA3-GID1A-RGA) of the Arabidopsis GA3-GID1A-RGA-SLY1-ASK1 Complex
Method: single particle / : Dahal P, Sharma K, Borgnia M, Zhou P

EMDB-70107:
Cryo-EM Local Refinement Map (SLY1-ASK1) of the Arabidopsis GA3-GID1A-RGA-SLY1-ASK1 Complex
Method: single particle / : Dahal P, Sharma K, Borgnia M, Zhou P

EMDB-70510:
Cryo-EM Structure of the Arabidopsis GA3-GID1A-RGA-SLY1-ASK1 Complex (Alternative Conformation)
Method: single particle / : Dahal P, Sharma K, Borgnia M, Zhou P

EMDB-70511:
Cryo-EM Non-Uniform Refinement Map of the Arabidopsis GA3-GID1A-RGA-SLY1-ASK1 Complex (Alternative Conformation)
Method: single particle / : Dahal P, Sharma K, Borgnia M, Zhou P

EMDB-70512:
Cryo-EM Local Refinement Map (GA3-GID1A-RGA) of the Arabidopsis GA3-GID1A-RGA-SLY1-ASK1 Complex (Alternative Conformation)
Method: single particle / : Dahal P, Sharma K, Borgnia M, Zhou P

EMDB-70513:
Cryo-EM Local Refinement Map (SLY1-ASK1) of the Arabidopsis GA3-GID1A-RGA-SLY1-ASK1 Complex (Alternative Conformation)
Method: single particle / : Dahal P, Sharma K, Borgnia M, Zhou P

PDB-9o4j:
Cryo-EM Structure of the Arabidopsis GA3-GID1A-RGA Complex
Method: single particle / : Dahal P, Sharma K, Borgnia M, Zhou P

PDB-9o4k:
Cryo-EM Structure of the Arabidopsis GA3-GID1A-RGA-SLY1-ASK1 Complex
Method: single particle / : Dahal P, Sharma K, Borgnia M, Zhou P

PDB-9oi8:
Cryo-EM Structure of the Arabidopsis GA3-GID1A-RGA-SLY1-ASK1 Complex (Alternative Conformation)
Method: single particle / : Dahal P, Sharma K, Borgnia M, Zhou P

EMDB-46948:
Structure of URAT1 with no external ligand added
Method: single particle / : Suo Y, Fedor JG, Lee SY

EMDB-46949:
Structure of URAT1 in complex with benzbromarone
Method: single particle / : Suo Y, Fedor JG, Lee SY

EMDB-46950:
Structure of URAT1 in complex with lesinurad
Method: single particle / : Suo Y, Fedor JG, Lee SY

EMDB-46951:
Structure of URAT1 in complex with TD-3
Method: single particle / : Suo Y, Fedor JG, Lee SY

PDB-9dk9:
Structure of URAT1 with no external ligand added
Method: single particle / : Suo Y, Fedor JG, Lee SY

PDB-9dka:
Structure of URAT1 in complex with benzbromarone
Method: single particle / : Suo Y, Fedor JG, Lee SY

PDB-9dkb:
Structure of URAT1 in complex with lesinurad
Method: single particle / : Suo Y, Fedor JG, Lee SY

PDB-9dkc:
Structure of URAT1 in complex with TD-3
Method: single particle / : Suo Y, Fedor JG, Lee SY

EMDB-42072:
Cryo-EM Structure of Brucella Abortus Lumazine Synthase (BLS) Engineered with Shiga Toxin I subunit B (Stx1B)
Method: single particle / : Cristofalo AE, Sharma A, Cerutti ML, Sharma K, Zylberman V, Goldbaum FA, Borgnia MJ, Otero LH

EMDB-42073:
Cryo-EM Structure of Brucella Abortus Lumazine Synthase (BLS) Engineered with Shiga Toxin II subunit B (Stx2B)
Method: single particle / : Cristofalo AE, Sharma A, Cerutti ML, Sharma K, Zylberman V, Goldbaum FA, Borgnia MJ, Otero LH

PDB-8uav:
Cryo-EM Structure of Brucella Abortus Lumazine Synthase (BLS) Engineered with Shiga Toxin I subunit B (Stx1B)
Method: single particle / : Cristofalo AE, Sharma A, Cerutti ML, Sharma K, Zylberman V, Goldbaum FA, Borgnia MJ, Otero LH

PDB-8uaw:
Cryo-EM Structure of Brucella Abortus Lumazine Synthase (BLS) Engineered with Shiga Toxin II subunit B (Stx2B)
Method: single particle / : Cristofalo AE, Sharma A, Cerutti ML, Sharma K, Zylberman V, Goldbaum FA, Borgnia MJ, Otero LH

EMDB-44100:
Cryo-EM structure of the mouse TRPM3 alpha 2 channel in complex with primidone
Method: single particle / : Yin Y, Park CG, Feng S, Zhang F, Guan Z, Sharma K, Borgnia MJ, Im W, Lee SY

EMDB-44101:
Cryo-EM structure of the mouse TRPM3 alpha 2 channel in complex with cholesteryl hemisuccinate
Method: single particle / : Yin Y, Park CG, Feng S, Zhang F, Guan Z, Sharma K, Borgnia MJ, Im W, Lee SY

EMDB-44102:
Cryo-EM structure of the mouse TRPM3 alpha 2 channel in complex with the neurosteroid pregnenolone sulfate and the synthetic agonist CIM 0216
Method: single particle / : Yin Y, Park CG, Feng S, Zhang F, Guan Z, Sharma K, Borgnia MJ, Im W, Lee SY

PDB-9b28:
Cryo-EM structure of the mouse TRPM3 alpha 2 channel in complex with primidone
Method: single particle / : Yin Y, Park CG, Feng S, Zhang F, Guan Z, Sharma K, Borgnia MJ, Im W, Lee SY

PDB-9b29:
Cryo-EM structure of the mouse TRPM3 alpha 2 channel in complex with cholesteryl hemisuccinate
Method: single particle / : Yin Y, Park CG, Feng S, Zhang F, Guan Z, Sharma K, Borgnia MJ, Im W, Lee SY

PDB-9b2a:
Cryo-EM structure of the mouse TRPM3 alpha 2 channel in complex with the neurosteroid pregnenolone sulfate and the synthetic agonist CIM 0216
Method: single particle / : Yin Y, Park CG, Feng S, Zhang F, Guan Z, Sharma K, Borgnia MJ, Im W, Lee SY

EMDB-43518:
Cryo-EM structure of human ABC transporter ABCC1
Method: single particle / : Shinde O, Li P

EMDB-43543:
Cryo-EM structure of human ABC transporter (hABCC1) bound to cGAMP
Method: single particle / : Shinde O, Li P

EMDB-43550:
Cryo-EM structure of human ABC transporter (hABCC1) with nucleotide-binding domain 2
Method: single particle / : Shinde O, Li P

PDB-8vt4:
Cryo-EM structure of human ABC transporter ABCC1
Method: single particle / : Shinde O, Li P

PDB-8vux:
Cryo-EM structure of human ABC transporter (hABCC1) bound to cGAMP
Method: single particle / : Shinde O, Li P

PDB-8vvc:
Cryo-EM structure of human ABC transporter (hABCC1) with nucleotide-binding domain 2
Method: single particle / : Shinde O, Li P

EMDB-45096:
The FBF-2/LST-1/gld-1 RNA complex (one FBF-2)
Method: single particle / : Qiu C, Hall TMT

EMDB-45097:
The FBF-2/LST-1/gld-1 RNA complex (two FBF-2)
Method: single particle / : Qiu C, Hall TMT

EMDB-44590:
SARS-CoV-2 endoribonuclease Nsp15 bound to dsRNA with 1 nucleotide bulge
Method: single particle / : Wright ZM, Butay KJ, Krahn JM, Borgnia MJ, Stanley RE

PDB-9bih:
SARS-CoV-2 endoribonuclease Nsp15 bound to dsRNA with 1 nucleotide bulge
Method: single particle / : Wright ZM, Butay KJ, Krahn JM, Borgnia MJ, Stanley RE

EMDB-50023:
mouse alpha-synuclein
Method: helical / : Tatli M, Stahlberg H, Kolla R, Nazarov S, Weil MT, Schondorf DC, Geist D, Reinhardt P, Ehrnhoefer DE, Gasparini L, Lashuel HA

PDB-9ewv:
mouse alpha-synuclein
Method: helical / : Tatli M, Stahlberg H

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more