[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 118 items for (author: ball & da)

EMDB-63614:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Z, Hauser AS, Carlsson J

EMDB-70822:
Consensus Map of PI4KA/TTC7B/FAM126A/F3IN Nanobody
Method: single particle / : Shaw AL, Suresh S, Yip CK, Burke JE

EMDB-70824:
Local Refinement A of PI4KA/TTC7B/FAM126A/F3IN Nanobody
Method: single particle / : Shaw AL, Suresh S, Yip CK, Burke JE

EMDB-70825:
Local Refinement B of PI4KA/TTC7B/FAM126A/F3IN nanbody
Method: single particle / : Shaw AL, Suresh S, Yip CK, Burke JE

EMDB-70826:
Cryo-EM structure of the PI4KA complex bound to an EFR3 interfering nanobody (F3IN)
Method: single particle / : Shaw AL, Suresh S, Yip CK, Burke JE

PDB-9ot6:
Cryo-EM structure of the PI4KA complex bound to an EFR3 interfering nanobody (F3IN)
Method: single particle / : Shaw AL, Suresh S, Yip CK, Burke JE

EMDB-70340:
FH_302_07 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70341:
FH_302_14 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70342:
FH_302_23 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70343:
BG505 MD39.3-CC5 SOSIP in complex with V1V3 epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70344:
BG505 MD39.3-CC5 SOSIP in complex with gp41-base epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70345:
BG505 MD39.3-CC5 SOSIP in complex with C3V5 epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-51184:
CryoEM structure of influenza A RNP-like particle single-stranded assembled with a 12-mer RNA.
Method: helical / : Chenavier F, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

EMDB-51185:
CryoEM structure of influenza A RNP-like particle double-stranded assembled with a 12-mer RNA.
Method: helical / : Chenavier F, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

EMDB-51186:
CryoEM structure of influenza A RNP-like particle double-stranded assembled with a 14-mer RNA.
Method: helical / : Chenavier F, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

EMDB-51187:
Focused reconstruction on strand 2 of the influenza A RNP-like particle double-stranded assembled with a 18-mer RNA.
Method: helical / : Chenavier F, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

EMDB-51188:
CryoEM structure of the antiparallel double-stranded influenza A RNP-like particle with a 18-mer RNA.
Method: helical / : Chenavier F, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

EMDB-51189:
Focused reconstruction on strand 1 of the influenza A RNP-like particle double-stranded assembled with a 18-mer RNA.
Method: helical / : Chenavier F, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

PDB-9gan:
CryoEM structure of influenza A RNP-like particle single-stranded assembled with a 12-mer RNA.
Method: helical / : Chenavier F, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

PDB-9gap:
CryoEM structure of influenza A RNP-like particle double-stranded assembled with a 12-mer RNA.
Method: helical / : Chenavier F, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

PDB-9gaq:
CryoEM structure of influenza A RNP-like particle double-stranded assembled with a 14-mer RNA.
Method: helical / : Chenavier F, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

PDB-9gas:
Focused reconstruction on strand 2 of the influenza A RNP-like particle double-stranded assembled with a 18-mer RNA.
Method: helical / : Chenavier F, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

PDB-9gat:
CryoEM structure of the antiparallel double-stranded influenza A RNP-like particle with a 18-mer RNA.
Method: helical / : Chenavier F, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

PDB-9gav:
Focused reconstruction on strand 1 of the influenza A RNP-like particle double-stranded assembled with a 18-mer RNA.
Method: helical / : Chenavier F, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

EMDB-40815:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies C3V5, V1V3, N611 and base from participant 017
Method: single particle / : Karlinsey D, Ozorowski G, Ward AB

EMDB-40816:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies gp41-N611/FP and base from participant 03
Method: single particle / : Karlinsey D, Ozorowski G, Ward AB

EMDB-40817:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies gp41-N611/FP and base from participant 07
Method: single particle / : Karlinsey D, Ozorowski G, Ward AB

EMDB-40818:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies gp120-GH and base from participant 09
Method: single particle / : Karlinsey D, Ozorowski G, Ward AB

EMDB-40819:
BG505 SOSIP.664 in complex with wk26 human polyclonal antibodies C3V5, V1V3, gp41-GH/FP and base from participant 11
Method: single particle / : Karlinsey D, Ozorowski G, Ward AB

EMDB-19276:
Cryo-EM of tetrameric collagenase-cleaved Xenopus ZP2-N2N3 (cleaved xZP2-N2N3) (C1)
Method: single particle / : Wiseman B, Nishio S, Jovine L

EMDB-19277:
Cryo-EM of tetrameric collagenase-cleaved Xenopus ZP2-N2N3 (cleaved xZP2-N2N3) (C2)
Method: single particle / : Wiseman B, Nishio S, Jovine L

EMDB-18043:
Helical structure of the influenza A virus ribonucleoprotein-like
Method: helical / : Chenavier F, Estrozi LF, Zarkadas E, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

EMDB-18044:
Focused reconstruction of influenza A RNP-like particle
Method: helical / : Chenavier F, Estrozi LF, Zarkadas E, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

PDB-8pzp:
Model for influenza A virus helical ribonucleoprotein-like structure
Method: helical / : Chenavier F, Estrozi LF, Zarkadas E, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

PDB-8pzq:
Model for focused reconstruction of influenza A RNP-like particle
Method: helical / : Chenavier F, Estrozi LF, Zarkadas E, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T

EMDB-14628:
SARS-CoV-2 Spike protein in complex with the single chain fragment scFv76
Method: single particle / : Chaves-Sanjuan A, Bolognesi M

EMDB-14629:
SARS-CoV-2 Spike RBD in complex with the single chain fragment scFv76 (Focused Refinement)
Method: single particle / : Chaves-Sanjuan A, Bolognesi M

PDB-7zce:
SARS-CoV-2 Spike protein in complex with the single chain fragment scFv76
Method: single particle / : Chaves-Sanjuan A, Bolognesi M

PDB-7zcf:
SARS-CoV-2 Spike RBD in complex with the single chain fragment scFv76 (Focused Refinement)
Method: single particle / : Chaves-Sanjuan A, Bolognesi M

EMDB-13427:
Structure of a fully assembled T-cell receptor engaging a tumor-associated peptide-MHC I
Method: single particle / : Susac L, Thomas C

PDB-7phr:
Structure of a fully assembled T-cell receptor engaging a tumor-associated peptide-MHC I
Method: single particle / : Susac L, Thomas C, Tampe R

EMDB-26737:
Mouse mammary tumor virus strand transfer complex intasome
Method: single particle / : Jozwik I, Lyumkis D

EMDB-26744:
Higher-order assembly of multiple MMTV strand transfer complex intasomes
Method: single particle / : Jozwik I, Lyumkis D

PDB-7usf:
Mouse mammary tumor virus strand transfer complex intasome
Method: single particle / : Jozwik I, Lyumkis D

PDB-7ut1:
Higher-order assembly of multiple MMTV strand transfer complex intasomes
Method: single particle / : Jozwik I, Lyumkis D

EMDB-13916:
SARS-CoV-2 S protein S:A222V + S:D614G mutant 1-up
Method: single particle / : Ginex T, Marco-Marin C

EMDB-13917:
SARS-CoV-2 S protein S:A222V + S:D614G mutant 2-up
Method: single particle / : Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Lopez-Redondo ML, Ruiz-Rodriguez P, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM

EMDB-13918:
SARS-CoV-2 S protein S:A222V + S:D614G mutant 3-down
Method: single particle / : Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Lopez-Redondo ML, Ruiz-Rodriguez P, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM

EMDB-13919:
SARS-CoV-2 S protein S:D614G mutant 1-up
Method: single particle / : Ginex T, Marco-Marin C

EMDB-13920:
SARS-CoV-2 S protein S:D614G mutant 2-up
Method: single particle / : Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Lopez-Redondo ML, Ruiz-Rodriguez P, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more