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Showing all 9 items for author: a. & sali

PDB-5n8n:
Contracted sheath of a Pseudomonas aeruginosa type six secretion system consisting of TssB1 and TssC1
Method: helical / : Salih O, He S, Stach L, Macdonald JT, Planamente S, Manoli E, Scheres S, Filloux A, Freemont PS

PDB-5ln3:
The human 26S Proteasome at 6.8 Ang.
Method: single particle / : Schweitzer A, Beck F, Sakata E, Unverdorben P

PDB-5fm1:
Structure of gamma-tubulin small complex based on a cryo-EM map, chemical cross-links, and a remotely related structure
Method: helical / : Greenberg CH, Kollman J, Zelter A, Johnson R, MacCoss MJ, Davis TN, Agard DA, Sali A

PDB-5flz:
Cryo-EM structure of gamma-TuSC oligomers in a closed conformation
Method: helical / : Greenberg CH, Kollman J, Zelter A, Johnson R, MacCoss MJ, Davis TN, Agard DA, Sali A

PDB-4v47:
Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome
Method: single particle / : Gao H, Sengupta J, Valle M, Korostelev A, Eswar N, Stagg SM, Van Roey P, Agrawal RK, Harvey ST, Sali A, Chapman MS, Frank J

PDB-4v48:
Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome
Method: single particle / : Gao H, Sengupta J, Valle M, Korostelev A, Eswar N, Stagg SM, Van Roey P, Agrawal RK, Harvey ST, Sali A, Chapman MS, Frank J

PDB-4v7h:
Structure of the 80S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution
Method: single particle / : Taylor DJ, Devkota B, Huang AD, Topf M, Narayanan E, Sali A, Harvey SC, Frank J

PDB-3b63:
Actin filament model in the extended form of acromsomal bundle in the Limulus sperm
Method: electron crystallography / : Cong Y, Topf M, Sali A, Matsudaira P, Dougherty M, Chiu W, Schmid MF

PDB-3b5u:
Actin filament model from extended form of acromsomal bundle in the Limulus sperm
Method: electron crystallography / : Cong Y, Topf M, Sali A, Matsudaira P, Dougherty M, Chiu W, Schmid MF

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Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

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Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Jun 16, 2017. Omokage search with filter

Omokage search with filter

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Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

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Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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