Author results

6GZN
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ADENINE-DRIVEN STRUCTURAL SWITCH FROM TWO- TO THREE-QUARTET DNA G-QUADRUPLEX
Descriptor:DNA (5'-D(*GP*GP*GP*TP*AP*GP*GP*GP*AP*GP*CP*GP*GP*GP*AP*GP*AP*GP*GP*G)-3')
Authors:Lenarcic Zivkovic, M., Rozman, J., Plavec, J.
Deposit date:2018-07-04
Release date:2018-09-26
Last modified:2018-11-21
Method:SOLUTION NMR
Cite:Adenine-Driven Structural Switch from a Two- to Three-Quartet DNA G-Quadruplex.
Angew. Chem. Int. Ed. Engl., 57, 2018
2N2D
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STRUCTURE OF DNA G-QUADRUPLEX ADOPTED BY ALS AND FTD RELATED GGGGCC REPEAT WITH G21 TO BR-G21 SUBSTITUTION
Descriptor:DNA (5'-D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*(BGM)P*G)-3')
Authors:Brcic, J., Plavec, J.
Deposit date:2015-05-06
Release date:2015-09-23
Last modified:2015-10-14
Method:SOLUTION NMR
Cite:Solution structure of a DNA quadruplex containing ALS and FTD related GGGGCC repeat stabilized by 8-bromodeoxyguanosine substitution.
Nucleic Acids Res., 43, 2015
5LIG
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G-QUADRUPLEX FORMED AT THE 5'-END OF NHEIII_1 ELEMENT IN HUMAN C-MYC PROMOTER BOUND TO TRIANGULENIUM BASED FLUORESCENCE PROBE DAOTA-M2
Descriptor:DNA (5'-D(*TP*AP*GP*GP*GP*AP*GP*GP*GP*TP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3'), 8,12-bis(2-morpholinoethyl)-8H-benzo[ij]xantheno[1,9,8-cdef][2,7]naphthyridin-12-iumhexafluorophosphate
Authors:Kotar, A., Wang, B., Shivalingam, A., Gonzalez-Garcia, J., Vilar, R., Plavec, J.
Deposit date:2016-07-14
Release date:2016-09-14
Last modified:2018-03-07
Method:SOLUTION NMR
Cite:NMR Structure of a Triangulenium-Based Long-Lived Fluorescence Probe Bound to a G-Quadruplex.
Angew.Chem.Int.Ed.Engl., 55, 2016
5M1W
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STRUCTURE OF A STABLE G-HAIRPIN
Descriptor:DNA (5'-D(*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G)-3')
Authors:Gajarsky, M., Zivkovic, M.L., Stadlbauer, P., Pagano, B., Fiala, R., Amato, J., Tomaska, L., Sponer, J., Plavec, J., Trantirek, L.
Deposit date:2016-10-11
Release date:2017-03-01
Last modified:2017-03-29
Method:SOLUTION NMR
Cite:Structure of a Stable G-Hairpin.
J. Am. Chem. Soc., 139, 2017
5OPH
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G-QUADRUPLEX STRUCTURE OF DNA OLIGONUCLEOTIDE CONTAINING GGGGCC REPEATS LINKED TO ALS AND FTD
Descriptor:DNA (5'-D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*(BGM)P*G)-3')
Authors:Brcic, J., Plavec, J.
Deposit date:2017-08-09
Release date:2018-08-29
Last modified:2018-12-19
Method:SOLUTION NMR
Cite:NMR structure of a G-quadruplex formed by four d(G4C2) repeats: insights into structural polymorphism.
Nucleic Acids Res., 46, 2018
6GIR
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ARABIDOPSIS THALIANA CYTOSOLIC SERYL-TRNA SYNTHETASE
Descriptor:Serine--tRNA ligase, cytoplasmic
Authors:Kekez, I., Kekez, M., Rokov-Plavec, J., Matkovic-Calogovic, D.
Deposit date:2018-05-15
Release date:2019-01-02
Last modified:2019-02-13
Method:X-RAY DIFFRACTION (2.343 Å)
Cite:Arabidopsis seryl-tRNA synthetase: the first crystal structure and novel protein interactor of plant aminoacyl-tRNA synthetase.
FEBS J., 286, 2019
2M53
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G-RICH VEGF APTAMER WITH LNA MODIFICATIONS
Descriptor:G-rich VEGF aptamer
Authors:Marusic, M., Veedu, R.N., Plavec, J.
Deposit date:2013-02-13
Release date:2013-08-28
Method:SOLUTION NMR
Cite:G-rich VEGF aptamer with locked and unlocked nucleic acid modifications exhibits a unique G-quadruplex fold
Nucleic Acids Res., 2013
6IA0
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HUMAN TELOMERIC G-QUADRUPLEX WITH 8-OXO-G SUBSTITUTION IN THE CENTRAL G-QUARTET
Descriptor:hTel-oxoG10
Authors:Bielskute, S., Plavec, J., Podbevsek, P.
Deposit date:2018-11-26
Release date:2019-01-30
Last modified:2019-02-20
Method:SOLUTION NMR
Cite:Impact of Oxidative Lesions on the Human Telomeric G-Quadruplex.
J. Am. Chem. Soc., 141, 2019
6IA4
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HUMAN TELOMERIC G-QUADRUPLEX WITH 8-OXO-G SUBSTITUTION IN THE OUTER G-QUARTET
Descriptor:hTel-oxoG21
Authors:Bielskute, S., Plavec, J., Podbevsek, P.
Deposit date:2018-11-26
Release date:2019-01-30
Last modified:2019-02-20
Method:SOLUTION NMR
Cite:Impact of Oxidative Lesions on the Human Telomeric G-Quadruplex.
J. Am. Chem. Soc., 141, 2019
1LVS
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THE SOLUTION STRUCTURE OF D(G4T4G3)2
Descriptor:5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*G)-3'
Authors:Crnugelj, M., Hud, N.V., Plavec, J.
Deposit date:2002-05-29
Release date:2002-07-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of d(G(4)T(4)G(3))(2): a bimolecular G-quadruplex with a novel fold.
J.Mol.Biol., 320, 2002
1U64
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THE SOLUTION STRUCTURE OF D(G3T4G4)2
Descriptor:5'-D(*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3'
Authors:Sket, P., Crnugelj, M., Plavec, J.
Deposit date:2004-07-29
Release date:2004-10-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:d(G3T4G4) forms unusual dimeric G-quadruplex structure with the same general fold in the presence of K+, Na+ or NH4+ ions.
Bioorg.Med.Chem., 12, 2004
1XV6
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THE SOLUTION STRUCTURE OF 2',5'-LINKED 3'-O-(2-METHOXYETHYL)-RNA HAIRPIN
Descriptor:5'-R(*(C2L)P*(G2L)P*(C2L)P*(G2L)P*(A2L)P*(A2L)P*(U2L)P*(U2L)P*(C2L)P*(G2L)P*(C2L)P*(G2L))-2'
Authors:Plevnik, M., Gdaniec, Z., Plavec, J.
Deposit date:2004-10-27
Release date:2005-04-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a modified 2',5'-linked RNA hairpin involved in an equilibrium with duplex
Nucleic Acids Res., 33, 2005
2JXV
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SOLUTION STRUCTURE OF A LET-7 MIRNA:LIN-41 MRNA COMPLEX FROM C. ELEGANS
Descriptor:RNA (33-MER)
Authors:Cevec, M., Thibaudeau, C., Plavec, J.
Deposit date:2007-11-30
Release date:2008-04-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans.
Nucleic Acids Res., 36, 2008
2KPV
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NMR MODEL OF THE FIRST LET-7 MIRNA COMPLEMENTARY SITE (LCS1) IN 3'-UTR OF LIN-41 MRNA FROM C. ELEGANS
Descriptor:RNA (34-MER)
Authors:Cevec, M., Thibaudeau, C., Plavec, J.
Deposit date:2009-10-20
Release date:2010-08-04
Last modified:2011-09-07
Method:SOLUTION NMR
Cite:NMR structure of the let-7 miRNA interacting with the site LCS1 of lin-41 mRNA from Caenorhabditis elegans.
Nucleic Acids Res., 38, 2010
2KUN
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THREE DIMENSIONAL STRUCTURE OF HUPRP(90-231 M129 Q212P)
Descriptor:Major prion protein
Authors:Ilc, G., Giachin, G., Jaremko, M., Jaremko, L., Zhukov, I., Plavec, J., Legname, G., Benetti, F.
Deposit date:2010-02-23
Release date:2010-08-25
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the human prion protein with the pathological Q212P mutation reveals unique structural features.
Plos One, 5, 2010
2KWG
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SOLUTION STRUCTURE OF A FULLY MODIFIED 2'-F/2'-OME SIRNA CONSTRUCT
Descriptor:5'-R(*(GF2)P*(OMG)P*(GF2)P*(OMU)P*(AF2)P*(A2M)P*(AF2)P*(OMU)P*(AF2)P*(OMC)P*(AF2)P*(OMU)P*(UFT)P*(OMC)P*(UFT)P*(OMU)P*(CFZ)P*(A2M)P*(UFT)P*(OMU)P*(UFT))-3', 5'-R(P*(A2M)P*(UFT)P*(OMG)P*(AF2)P*(A2M)P*(GF2)P*(A2M)P*(AF2)P*(OMU)P*(GF2)P*(OMU)P*(AF2)P*(OMU)P*(UFT)P*(OMU)P*(AF2)P*(OMC)P*(CFZ)P*(OMC)P*(UFT)P*(OMU))-3'
Authors:Podbevsek, P., Bhat, B., Plavec, J.
Deposit date:2010-04-09
Release date:2010-07-21
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution-state structure of a fully alternately 2'-F/2'-OMe modified 42-nt dimeric siRNA construct.
Nucleic Acids Res., 38, 2010
2LED
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UNIQUE STRUCTURAL FEATURES OF INTERCONVERTING MONOMERIC AND DIMERIC G-QUADRUPLEXES ADOPTED BY A SEQUENCE FROM INTRON OF N-MYC GENE
Descriptor:DNA (5'-D(*TP*AP*GP*GP*GP*CP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*A)-3')
Authors:Trajkovski, M., Plavec, J., Webba da Silva, M.
Deposit date:2011-06-15
Release date:2012-03-14
Method:SOLUTION NMR
Cite:Unique Structural Features of Interconverting Monomeric and Dimeric G-Quadruplexes Adopted by a Sequence from the Intron of the N-myc Gene.
J.Am.Chem.Soc., 134, 2012
2LEE
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UNIQUE STRUCTURAL FEATURES OF INTERCONVERTING MONOMERIC AND DIMERIC G-QUADRUPLEXES ADOPTED BY A SEQUENCE FROM INTRON OF N-MYC GENE
Descriptor:DNA (5'-D(*TP*AP*GP*GP*GP*CP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*A)-3')
Authors:Trajkovski, M., Plavec, J., Webba da Silva, M.
Deposit date:2011-06-15
Release date:2012-03-14
Method:SOLUTION NMR
Cite:Unique Structural Features of Interconverting Monomeric and Dimeric G-Quadruplexes Adopted by a Sequence from the Intron of the N-myc Gene.
J.Am.Chem.Soc., 134, 2012
2LEJ
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HUMAN PRION PROTEIN MUTANT HUPRP(90-231, M129, V210I)
Descriptor:Major prion protein
Authors:Biljan, I., Ilc, G., Giachin, G., Raspadori, A., Zhukov, I., Plavec, J., Legname, G.
Deposit date:2011-06-16
Release date:2011-08-17
Last modified:2011-09-28
Method:SOLUTION NMR
Cite:Toward the Molecular Basis of Inherited Prion Diseases: NMR Structure of the Human Prion Protein with V210I Mutation.
J.Mol.Biol., 412, 2011
2LFT
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HUMAN PRION PROTEIN WITH E219K PROTECTIVE POLYMORPHISM
Descriptor:Major prion protein
Authors:Biljan, I., Ilc, G., Giacin, G., Zhukov, I., Plavec, J., Legname, G.
Deposit date:2011-07-14
Release date:2012-06-27
Last modified:2012-09-05
Method:SOLUTION NMR
Cite:Structural basis for the protective effect of the human prion protein carrying the dominant-negative E219K polymorphism.
Biochem.J., 446, 2012
2LOD
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SOLUTION-STATE STRUCTURE OF AN INTRAMOLECULAR G-QUADRUPLEX WITH PROPELLER, DIAGONAL AND EDGEWISE LOOPS
Descriptor:DNA (5'-D(*GP*GP*GP*AP*TP*GP*GP*GP*AP*CP*AP*CP*AP*GP*GP*GP*GP*AP*CP*GP*GP*G)-3')
Authors:Marusic, M., Sket, P., Bauer, L., Viglasky, V., Plavec, J.
Deposit date:2012-01-23
Release date:2012-05-30
Last modified:2012-08-15
Method:SOLUTION NMR
Cite:Solution-state structure of an intramolecular G-quadruplex with propeller, diagonal and edgewise loops.
Nucleic Acids Res., 40, 2012
2LSB
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SOLUTION-STATE NMR STRUCTURE OF THE HUMAN PRION PROTEIN
Descriptor:Major prion protein
Authors:Biljan, I., Ilc, G., Giancin, G., Zhukov, I., Plavec, J., Legname, G.
Deposit date:2012-04-26
Release date:2012-06-27
Last modified:2012-09-05
Method:SOLUTION NMR
Cite:Structural basis for the protective effect of the human prion protein carrying the dominant-negative E219K polymorphism.
Biochem.J., 446, 2012
2LV1
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SOLUTION-STATE NMR STRUCTURE OF PRION PROTEIN MUTANT V210I AT NEUTRAL PH
Descriptor:Major prion protein
Authors:Biljan, I., Ilc, G., Giachin, G., Legname, G., Plavec, J.
Deposit date:2012-06-26
Release date:2012-09-19
Last modified:2013-02-20
Method:SOLUTION NMR
Cite:Structural Rearrangements at Physiological pH: Nuclear Magnetic Resonance Insights from the V210I Human Prion Protein Mutant.
Biochemistry, 51, 2012
2M39
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THE SOLUTION STRUCTURE OF 3',5'-LINKED 2'-O-(2-METHOXYETHYL)-RNA DUPLEX
Descriptor:RNA (5'-R(*(C5L)P*(G48)P*(C5L)P*(G48)P*(A44)P*(A44)P*(T39)P*(T39)P*(C5L)P*(G48)P*(C5L)P*DG)-3')
Authors:Plevnik, M., Cevec, M., Plavec, J.
Deposit date:2013-01-15
Release date:2013-11-27
Method:SOLUTION NMR
Cite:NMR structure of 2'-O-(2-methoxyethyl) modified and C5-methylated RNA dodecamer duplex.
Biochimie, 95, 2013
2MAE
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TRANSMEMBRANE-CYTOSOLIC PART OF TROP2 EXPLORED BY NMR AND MOLECULAR DYNAMICS
Descriptor:Tumor-associated calcium signal transducer 2
Authors:Vidmar, T., Pavi, M., Ilc, G., Plavec, J., Lenari, B.
Deposit date:2013-07-08
Release date:2014-07-09
Method:SOLUTION NMR
Cite:Transmembrane-cytosolic part of Trop2 explored by NMR and Molecular Dynamics
To be Published
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