Author results

6GIR
  • Download 6gir
  • View 6gir
Molmil generated image of 6gir
ARABIDOPSIS THALIANA CYTOSOLIC SERYL-TRNA SYNTHETASE
Descriptor:Serine--tRNA ligase, cytoplasmic
Authors:Kekez, I., Kekez, M., Rokov-Plavec, J., Matkovic-Calogovic, D.
Deposit date:2018-05-15
Release date:2019-01-02
Last modified:2019-02-13
Method:X-RAY DIFFRACTION (2.343 Å)
Cite:Arabidopsis seryl-tRNA synthetase: the first crystal structure and novel protein interactor of plant aminoacyl-tRNA synthetase.
FEBS J., 286, 2019
1LVS
  • Download 1lvs
  • View 1lvs
Molmil generated image of 1lvs
THE SOLUTION STRUCTURE OF D(G4T4G3)2
Descriptor:5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*G)-3'
Authors:Crnugelj, M., Hud, N.V., Plavec, J.
Deposit date:2002-05-29
Release date:2002-07-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of d(G(4)T(4)G(3))(2): a bimolecular G-quadruplex with a novel fold.
J.Mol.Biol., 320, 2002
1U64
  • Download 1u64
  • View 1u64
Molmil generated image of 1u64
THE SOLUTION STRUCTURE OF D(G3T4G4)2
Descriptor:5'-D(*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3'
Authors:Sket, P., Crnugelj, M., Plavec, J.
Deposit date:2004-07-29
Release date:2004-10-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:d(G3T4G4) forms unusual dimeric G-quadruplex structure with the same general fold in the presence of K+, Na+ or NH4+ ions.
Bioorg.Med.Chem., 12, 2004
1XV6
  • Download 1xv6
  • View 1xv6
Molmil generated image of 1xv6
THE SOLUTION STRUCTURE OF 2',5'-LINKED 3'-O-(2-METHOXYETHYL)-RNA HAIRPIN
Descriptor:5'-R(*(C2L)P*(G2L)P*(C2L)P*(G2L)P*(A2L)P*(A2L)P*(U2L)P*(U2L)P*(C2L)P*(G2L)P*(C2L)P*(G2L))-2'
Authors:Plevnik, M., Gdaniec, Z., Plavec, J.
Deposit date:2004-10-27
Release date:2005-04-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a modified 2',5'-linked RNA hairpin involved in an equilibrium with duplex
Nucleic Acids Res., 33, 2005
2JXV
  • Download 2jxv
  • View 2jxv
Molmil generated image of 2jxv
SOLUTION STRUCTURE OF A LET-7 MIRNA:LIN-41 MRNA COMPLEX FROM C. ELEGANS
Descriptor:RNA (33-MER)
Authors:Cevec, M., Thibaudeau, C., Plavec, J.
Deposit date:2007-11-30
Release date:2008-04-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans.
Nucleic Acids Res., 36, 2008
2KPV
  • Download 2kpv
  • View 2kpv
Molmil generated image of 2kpv
NMR MODEL OF THE FIRST LET-7 MIRNA COMPLEMENTARY SITE (LCS1) IN 3'-UTR OF LIN-41 MRNA FROM C. ELEGANS
Descriptor:RNA (34-MER)
Authors:Cevec, M., Thibaudeau, C., Plavec, J.
Deposit date:2009-10-20
Release date:2010-08-04
Last modified:2011-09-07
Method:SOLUTION NMR
Cite:NMR structure of the let-7 miRNA interacting with the site LCS1 of lin-41 mRNA from Caenorhabditis elegans.
Nucleic Acids Res., 38, 2010
2KUN
  • Download 2kun
  • View 2kun
Molmil generated image of 2kun
THREE DIMENSIONAL STRUCTURE OF HUPRP(90-231 M129 Q212P)
Descriptor:Major prion protein
Authors:Ilc, G., Giachin, G., Jaremko, M., Jaremko, L., Zhukov, I., Plavec, J., Legname, G., Benetti, F.
Deposit date:2010-02-23
Release date:2010-08-25
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the human prion protein with the pathological Q212P mutation reveals unique structural features.
Plos One, 5, 2010
2KWG
  • Download 2kwg
  • View 2kwg
Molmil generated image of 2kwg
SOLUTION STRUCTURE OF A FULLY MODIFIED 2'-F/2'-OME SIRNA CONSTRUCT
Descriptor:5'-R(*(GF2)P*(OMG)P*(GF2)P*(OMU)P*(AF2)P*(A2M)P*(AF2)P*(OMU)P*(AF2)P*(OMC)P*(AF2)P*(OMU)P*(UFT)P*(OMC)P*(UFT)P*(OMU)P*(CFZ)P*(A2M)P*(UFT)P*(OMU)P*(UFT))-3', 5'-R(P*(A2M)P*(UFT)P*(OMG)P*(AF2)P*(A2M)P*(GF2)P*(A2M)P*(AF2)P*(OMU)P*(GF2)P*(OMU)P*(AF2)P*(OMU)P*(UFT)P*(OMU)P*(AF2)P*(OMC)P*(CFZ)P*(OMC)P*(UFT)P*(OMU))-3'
Authors:Podbevsek, P., Bhat, B., Plavec, J.
Deposit date:2010-04-09
Release date:2010-07-21
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution-state structure of a fully alternately 2'-F/2'-OMe modified 42-nt dimeric siRNA construct.
Nucleic Acids Res., 38, 2010
2LED
  • Download 2led
  • View 2led
Molmil generated image of 2led
UNIQUE STRUCTURAL FEATURES OF INTERCONVERTING MONOMERIC AND DIMERIC G-QUADRUPLEXES ADOPTED BY A SEQUENCE FROM INTRON OF N-MYC GENE
Descriptor:DNA (5'-D(*TP*AP*GP*GP*GP*CP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*A)-3')
Authors:Trajkovski, M., Plavec, J., Webba da Silva, M.
Deposit date:2011-06-15
Release date:2012-03-14
Method:SOLUTION NMR
Cite:Unique Structural Features of Interconverting Monomeric and Dimeric G-Quadruplexes Adopted by a Sequence from the Intron of the N-myc Gene.
J.Am.Chem.Soc., 134, 2012
2LEE
  • Download 2lee
  • View 2lee
Molmil generated image of 2lee
UNIQUE STRUCTURAL FEATURES OF INTERCONVERTING MONOMERIC AND DIMERIC G-QUADRUPLEXES ADOPTED BY A SEQUENCE FROM INTRON OF N-MYC GENE
Descriptor:DNA (5'-D(*TP*AP*GP*GP*GP*CP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*A)-3')
Authors:Trajkovski, M., Plavec, J., Webba da Silva, M.
Deposit date:2011-06-15
Release date:2012-03-14
Method:SOLUTION NMR
Cite:Unique Structural Features of Interconverting Monomeric and Dimeric G-Quadruplexes Adopted by a Sequence from the Intron of the N-myc Gene.
J.Am.Chem.Soc., 134, 2012
2LEJ
  • Download 2lej
  • View 2lej
Molmil generated image of 2lej
HUMAN PRION PROTEIN MUTANT HUPRP(90-231, M129, V210I)
Descriptor:Major prion protein
Authors:Biljan, I., Ilc, G., Giachin, G., Raspadori, A., Zhukov, I., Plavec, J., Legname, G.
Deposit date:2011-06-16
Release date:2011-08-17
Last modified:2011-09-28
Method:SOLUTION NMR
Cite:Toward the Molecular Basis of Inherited Prion Diseases: NMR Structure of the Human Prion Protein with V210I Mutation.
J.Mol.Biol., 412, 2011
2LFT
  • Download 2lft
  • View 2lft
Molmil generated image of 2lft
HUMAN PRION PROTEIN WITH E219K PROTECTIVE POLYMORPHISM
Descriptor:Major prion protein
Authors:Biljan, I., Ilc, G., Giacin, G., Zhukov, I., Plavec, J., Legname, G.
Deposit date:2011-07-14
Release date:2012-06-27
Last modified:2012-09-05
Method:SOLUTION NMR
Cite:Structural basis for the protective effect of the human prion protein carrying the dominant-negative E219K polymorphism.
Biochem.J., 446, 2012
2LOD
  • Download 2lod
  • View 2lod
Molmil generated image of 2lod
SOLUTION-STATE STRUCTURE OF AN INTRAMOLECULAR G-QUADRUPLEX WITH PROPELLER, DIAGONAL AND EDGEWISE LOOPS
Descriptor:DNA (5'-D(*GP*GP*GP*AP*TP*GP*GP*GP*AP*CP*AP*CP*AP*GP*GP*GP*GP*AP*CP*GP*GP*G)-3')
Authors:Marusic, M., Sket, P., Bauer, L., Viglasky, V., Plavec, J.
Deposit date:2012-01-23
Release date:2012-05-30
Last modified:2012-08-15
Method:SOLUTION NMR
Cite:Solution-state structure of an intramolecular G-quadruplex with propeller, diagonal and edgewise loops.
Nucleic Acids Res., 40, 2012
2LSB
  • Download 2lsb
  • View 2lsb
Molmil generated image of 2lsb
SOLUTION-STATE NMR STRUCTURE OF THE HUMAN PRION PROTEIN
Descriptor:Major prion protein
Authors:Biljan, I., Ilc, G., Giancin, G., Zhukov, I., Plavec, J., Legname, G.
Deposit date:2012-04-26
Release date:2012-06-27
Last modified:2012-09-05
Method:SOLUTION NMR
Cite:Structural basis for the protective effect of the human prion protein carrying the dominant-negative E219K polymorphism.
Biochem.J., 446, 2012
2LV1
  • Download 2lv1
  • View 2lv1
Molmil generated image of 2lv1
SOLUTION-STATE NMR STRUCTURE OF PRION PROTEIN MUTANT V210I AT NEUTRAL PH
Descriptor:Major prion protein
Authors:Biljan, I., Ilc, G., Giachin, G., Legname, G., Plavec, J.
Deposit date:2012-06-26
Release date:2012-09-19
Last modified:2013-02-20
Method:SOLUTION NMR
Cite:Structural Rearrangements at Physiological pH: Nuclear Magnetic Resonance Insights from the V210I Human Prion Protein Mutant.
Biochemistry, 51, 2012
2M39
  • Download 2m39
  • View 2m39
Molmil generated image of 2m39
THE SOLUTION STRUCTURE OF 3',5'-LINKED 2'-O-(2-METHOXYETHYL)-RNA DUPLEX
Descriptor:RNA (5'-R(*(C5L)P*(G48)P*(C5L)P*(G48)P*(A44)P*(A44)P*(T39)P*(T39)P*(C5L)P*(G48)P*(C5L)P*DG)-3')
Authors:Plevnik, M., Cevec, M., Plavec, J.
Deposit date:2013-01-15
Release date:2013-11-27
Method:SOLUTION NMR
Cite:NMR structure of 2'-O-(2-methoxyethyl) modified and C5-methylated RNA dodecamer duplex.
Biochimie, 95, 2013
2M53
  • Download 2m53
  • View 2m53
Molmil generated image of 2m53
G-RICH VEGF APTAMER WITH LNA MODIFICATIONS
Descriptor:G-rich VEGF aptamer
Authors:Marusic, M., Veedu, R.N., Plavec, J.
Deposit date:2013-02-13
Release date:2013-08-28
Method:SOLUTION NMR
Cite:G-rich VEGF aptamer with locked and unlocked nucleic acid modifications exhibits a unique G-quadruplex fold
Nucleic Acids Res., 2013
2MAE
  • Download 2mae
  • View 2mae
Molmil generated image of 2mae
TRANSMEMBRANE-CYTOSOLIC PART OF TROP2 EXPLORED BY NMR AND MOLECULAR DYNAMICS
Descriptor:Tumor-associated calcium signal transducer 2
Authors:Vidmar, T., Pavi, M., Ilc, G., Plavec, J., Lenari, B.
Deposit date:2013-07-08
Release date:2014-07-09
Method:SOLUTION NMR
Cite:Transmembrane-cytosolic part of Trop2 explored by NMR and Molecular Dynamics
To be Published
2MJJ
  • Download 2mjj
  • View 2mjj
Molmil generated image of 2mjj
A TETRAHELICAL DNA FOLD ADOPTED BY ALTERNATING GGG AND GCG TRACTS
Descriptor:5'-D(*GP*GP*GP*AP*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*G)-3'
Authors:Kocman, V., Plavec, J.
Deposit date:2014-01-10
Release date:2014-12-24
Last modified:2015-01-07
Method:SOLUTION NMR
Cite:A tetrahelical DNA fold adopted by tandem repeats of alternating GGG and GCG tracts.
Nat Commun, 5, 2014
2MVK
  • Download 2mvk
  • View 2mvk
Molmil generated image of 2mvk
SOLUTION STRUCTURE OF PHOSPHORYLATED CYTOSOLIC PART OF TROP2
Descriptor:Tumor-associated calcium signal transducer 2
Authors:Ilc, G., Plavec, J., Vidmar, T., Pavsic, M., Lenarcic, B.
Deposit date:2014-10-08
Release date:2015-05-06
Last modified:2018-04-18
Method:SOLUTION NMR
Cite:The cytosolic tail of the tumor marker protein Trop2--a structural switch triggered by phosphorylation.
Sci Rep, 5, 2015
2MVL
  • Download 2mvl
  • View 2mvl
Molmil generated image of 2mvl
SOLUTION STRUCTURE OF CYTOSOLIC PART OF TROP2
Descriptor:Tumor-associated calcium signal transducer 2
Authors:Ilc, G., Plavec, J., Vidmar, T., Pavsic, M., Lenarcic, B.
Deposit date:2014-10-08
Release date:2015-05-06
Last modified:2018-04-18
Method:SOLUTION NMR
Cite:The cytosolic tail of the tumor marker protein Trop2--a structural switch triggered by phosphorylation.
Sci Rep, 5, 2015
2N2D
  • Download 2n2d
  • View 2n2d
Molmil generated image of 2n2d
STRUCTURE OF DNA G-QUADRUPLEX ADOPTED BY ALS AND FTD RELATED GGGGCC REPEAT WITH G21 TO BR-G21 SUBSTITUTION
Descriptor:DNA (5'-D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*(BGM)P*G)-3')
Authors:Brcic, J., Plavec, J.
Deposit date:2015-05-06
Release date:2015-09-23
Last modified:2015-10-14
Method:SOLUTION NMR
Cite:Solution structure of a DNA quadruplex containing ALS and FTD related GGGGCC repeat stabilized by 8-bromodeoxyguanosine substitution.
Nucleic Acids Res., 43, 2015
2N8Y
  • Download 2n8y
  • View 2n8y
Molmil generated image of 2n8y
HOLO FORM OF CALMODULIN-LIKE DOMAIN OF HUMAN NON-MUSCLE ALPHA-ACTININ 1
Descriptor:Alpha-actinin-1, CALCIUM ION
Authors:Drmota Prebil, S., Slapsak, U., de Almeida Ribeiro, E., Pavsic, M., Ilc, G., Zielinska, K., Hartl, M., Backman, L., Plavec, J., Lenarcic, B., Djinovic-Carugo, K.
Deposit date:2015-10-28
Release date:2016-06-29
Method:SOLUTION NMR
Cite:Structure and calcium-binding studies of calmodulin-like domain of human non-muscle alpha-actinin-1.
Sci Rep, 6, 2016
2N8Z
  • Download 2n8z
  • View 2n8z
Molmil generated image of 2n8z
APO FORM OF CALMODULIN-LIKE DOMAIN OF HUMAN NON-MUSCLE ALPHA-ACTININ 1
Descriptor:Alpha-actinin-1
Authors:Drmota Prebil, S., Slapsak, U., de Almeida Ribeiro, E., Pavsic, M., Ilc, G., Zielinska, K., Hartl, M., Backman, L., Plavec, J., Lenarcic, B., Djinovic-Carugo, K.
Deposit date:2015-10-28
Release date:2016-06-29
Method:SOLUTION NMR
Cite:Structure and calcium-binding studies of calmodulin-like domain of human non-muscle alpha-actinin-1.
Sci Rep, 6, 2016
5L6R
  • Download 5l6r
  • View 5l6r
Molmil generated image of 5l6r
PRP226* - SOLUTION-STATE NMR STRUCTURE OF TRUNCATED HUMAN PRION PROTEIN
Descriptor:Major prion protein
Authors:Kovac, V., Zupancic, B., Ilc, G., Curin Serbec, V., Plavec, J.
Deposit date:2016-05-31
Release date:2016-10-05
Last modified:2017-02-15
Method:SOLUTION NMR
Cite:Truncated prion protein PrP226* - A structural view on its role in amyloid disease.
Biochem. Biophys. Res. Commun., 484, 2017
<12>