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2N4F	EC-NMR Structure of Arabidopsis thaliana At2g32350 Determined by Combining Evolutionary Couplings (EC) and Sparse NMR Data. Northeast Structural Genomics Consortium target AR3433A Descriptor: uncharacterized protein AR3433A Authors: Tang, Y, Huang, Y.J, Hopf, T.A, Sander, C, Marks, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) Deposit date: 2015-06-17 Release date: 2015-07-01 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Protein structure determination by combining sparse NMR data with evolutionary couplings. Nat.Methods, 12, 2015
2N2K	Ensemble structure of the closed state of Lys63-linked diubiquitin in the absence of a ligand Descriptor: S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate, ubiquitin Authors: Liu, Z, Gong, Z, Tang, C. Deposit date: 2015-05-10 Release date: 2015-07-08 Last modified: 2015-09-23 Method: SOLUTION NMR Cite: Lys63-linked ubiquitin chain adopts multiple conformational states for specific target recognition. Elife, 4, 2015
6E2B	Ubiquitin in complex with Pt(2-phenilpyridine)(PPh3) Descriptor: GLYCEROL, SULFATE ION, Ubiquitin, ... Authors: Zhemkov, V.A, Kim, M. Deposit date: 2018-07-11 Release date: 2018-11-14 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Reactions of Cyclometalated Platinum(II) [Pt(N∧C)(PR3)Cl] Complexes with Imidazole and Imidazole-Containing Biomolecules: Fine-Tuning of Reactivity and Photophysical Properties via Ligand Design. Inorg Chem, 58, 2019
2N7D	Solution structure of the UBL domain of human Ddi2 Descriptor: Protein DDI1 homolog 2 Authors: Siva, M, Grantz Saskova, K, Veverka, V. Deposit date: 2015-09-08 Release date: 2016-07-20 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Human DNA-Damage-Inducible 2 Protein Is Structurally and Functionally Distinct from Its Yeast Ortholog. Sci Rep, 6, 2016
2MWS	Structure of the complex of ubiquitin and the ubiquitin-like (UBL) domain of Ddi1 Descriptor: DNA damage-inducible protein 1, Ubiquitin Authors: Fushman, D, Nowicka, U, Walker, O. Deposit date: 2014-11-23 Release date: 2015-03-25 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: DNA-Damage-Inducible 1 Protein (Ddi1) Contains an Uncharacteristic Ubiquitin-like Domain that Binds Ubiquitin. Structure, 23, 2015
2NBD	Solution structure of V26A mutant of Ubiquitin at pH 6.0 Descriptor: entity Authors: Surana, P, Das, R. Deposit date: 2016-02-04 Release date: 2016-05-18 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Observing a late folding intermediate of Ubiquitin at atomic resolution by NMR Protein Sci., 25, 2016
2NBE	Solution structure of V26A mutant of Ubiquitin at pH 2.0 Descriptor: entity Authors: Surana, P, Das, R. Deposit date: 2016-02-04 Release date: 2016-05-18 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Observing a late folding intermediate of Ubiquitin at atomic resolution by NMR Protein Sci., 25, 2016
2N7K	Unveiling the structural determinants of KIAA0323 binding preference for NEDD8 Descriptor: NEDD8, Protein KHNYN Authors: Santonico, E, Nepravishta, R, Mattioni, A, Valentini, E, Mandaliti, W, Procopio, R, Iannuccelli, M, Castagnoli, L, Polo, S, Paci, M, Cesareni, G. Deposit date: 2015-09-14 Release date: 2016-09-14 Method: SOLUTION NMR Cite: Unveiling the structural determinants of KIAA0323 binding preference for NEDD8 To be Published
2N13	Complex structure of MyUb (1080-1122) of human Myosin VI with K63-diUb Descriptor: Ubiquitin, Unconventional myosin-VI Authors: He, F, Walters, K. Deposit date: 2015-03-20 Release date: 2016-03-09 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Myosin VI Contains a Compact Structural Motif that Binds to Ubiquitin Chains. Cell Rep, 14, 2016
8CMR	Linear specific OTU-type DUB SnOTU from the pathogen S. negenvensis in complex with linear di-ubiquitin Descriptor: OTU domain-containing protein, Polyubiquitin-B Authors: Uthoff, M, Hermanns, T, Boll, V, Hofmann, K, Baumann, U. Deposit date: 2023-02-21 Release date: 2023-11-22 Method: X-RAY DIFFRACTION (2.24 Å) Cite: Functional and structural diversity in deubiquitinases of the Chlamydia-like bacterium Simkania negevensis. Nat Commun, 14, 2023
2MQJ	Solution structure of ubiquitin-like protein from Caldiarchaeum subterraneum Descriptor: Ubiquitin-like protein Authors: Ye, K. Deposit date: 2014-06-22 Release date: 2015-06-24 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Solution structure of ubiquitin-like protein from Caldiarchaeum subterraneum To be Published
2NBU	Solution structure of the Rad23 ubiquitin-like (UBL) domain Descriptor: UV excision repair protein RAD23 Authors: Chen, X, Walters, K.J. Deposit date: 2016-03-12 Release date: 2016-07-20 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Structures of Rpn1 T1:Rad23 and hRpn13:hPLIC2 Reveal Distinct Binding Mechanisms between Substrate Receptors and Shuttle Factors of the Proteasome. Structure, 24, 2016
2OJR	Structure of ubiquitin solved by SAD using the Lanthanide-Binding Tag Descriptor: TERBIUM(III) ION, Ubiquitin Authors: Silvaggi, N.R, Allen, K.N. Deposit date: 2007-01-13 Release date: 2007-06-12 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Double-Lanthanide-Binding Tags for Macromolecular Crystallographic Structure Determination. J.Am.Chem.Soc., 129, 2007
2O6V	Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, Ubiquitin Authors: Eddins, M.J, Wolberger, C. Deposit date: 2006-12-08 Release date: 2007-02-13 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal Structure and Solution NMR Studies of Lys48-linked Tetraubiquitin at Neutral pH J.Mol.Biol., 367, 2007
2NR2	The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native states ensembles of proteins Descriptor: Ubiquitin Authors: Richter, B, Gsponer, J, Varnai, P, Salvatella, X, Vendruscolo, M. Deposit date: 2006-11-01 Release date: 2007-05-08 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins J.Biomol.Nmr, 37, 2007
8DMB	Structure of Desulfovirgula thermocuniculi IsrB (DtIsrB) in complex with omega RNA and target DNA Descriptor: MAGNESIUM ION, Ubiquitin-like protein SMT3,IsrB protein,monomeric superfolder Green Fluorescent Protein, non-target DNA, ... Authors: Seiichi, H, Kappel, K, Zhang, F. Deposit date: 2022-07-08 Release date: 2022-10-19 Last modified: 2022-10-26 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structure of the OMEGA nickase IsrB in complex with omega RNA and target DNA. Nature, 610, 2022
6FJ7	Caldiarchaeum Subterraneum Ubiquitin Descriptor: SULFATE ION, Ubiquitin-like protein Authors: Wojtynek, M, Martin, J, Hartmann, M.D. Deposit date: 2018-01-21 Release date: 2018-07-25 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.05 Å) Cite: Rpn11-mediated ubiquitin processing in an ancestral archaeal ubiquitination system. Nat Commun, 9, 2018
8DMQ	Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, METHYL 4-AMINOBUTANOATE, ... Authors: Zhang, Z, Das, C. Deposit date: 2022-07-08 Release date: 2023-07-12 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.195 Å) Cite: Structure of Legionella pneumophila macrodomain effector MavL in complex with ubiquitin vinyl methyl ester To Be Published
8DMS	Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester soaked with ADP-ribose Descriptor: CITRATE ANION, METHYL 4-AMINOBUTANOATE, MavL, ... Authors: Zhang, Z, Das, C. Deposit date: 2022-07-08 Release date: 2023-07-12 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester soaked with ADP-ribose To Be Published
8E7O	CRYSTAL STRUCTURE OF LYS48-LINKED TETRAUBIQUITIN Descriptor: SULFATE ION, Ubiquitin Authors: Lemma, B.E, Fushman, D. Deposit date: 2022-08-24 Release date: 2022-11-02 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Mechanism of selective recognition of Lys48-linked polyubiquitin by macrocyclic peptide inhibitors of proteasomal degradation. Nat Commun, 14, 2023
2OOB	crystal structure of the UBA domain from Cbl-b ubiquitin ligase in complex with ubiquitin Descriptor: E3 ubiquitin-protein ligase CBL-B, Ubiquitin Authors: Kozlov, G, Gehring, K. Deposit date: 2007-01-25 Release date: 2007-02-06 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural basis for ubiquitin-mediated dimerization and activation of the ubiquitin protein ligase Cbl-b. Mol.Cell, 27, 2007
2PE9	NMR Based Structure of the Open Conformation of LYS48-Linked Di-UBiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements Descriptor: Ubiquitin Authors: Ryabov, Y, Fushman, D. Deposit date: 2007-04-02 Release date: 2007-07-10 Last modified: 2022-03-16 Method: SOLUTION NMR Cite: Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor. J.Am.Chem.Soc., 129, 2007
2PEA	NMR Based Structure of the Closed Conformation of LYS48-Linked Di-Ubiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements Descriptor: Ubiquitin Authors: Ryabov, Y, Fushman, D. Deposit date: 2007-04-02 Release date: 2007-07-10 Last modified: 2022-03-16 Method: SOLUTION NMR Cite: Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor. J.Am.Chem.Soc., 129, 2007
6GF2	The structure of the ubiquitin-like modifier FAT10 reveals a novel targeting mechanism for degradation by the 26S proteasome Descriptor: Ubiquitin D Authors: Aichem, A, Anders, S, Catone, N, Roessler, P, Stotz, S, Berg, A, Schwab, R, Scheuermann, S, Bialas, J, Schmidtke, G, Peter, C, Groettrup, M, Wiesner, S. Deposit date: 2018-04-29 Release date: 2018-08-08 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: The structure of the ubiquitin-like modifier FAT10 reveals an alternative targeting mechanism for proteasomal degradation. Nat Commun, 9, 2018
6GF1	The structure of the ubiquitin-like modifier FAT10 reveals a novel targeting mechanism for degradation by the 26S proteasome Descriptor: SULFATE ION, Ubiquitin D Authors: Aichem, A, Anders, S, Catone, N, Roessler, P, Stotz, S, Berg, A, Schwab, R, Scheuermann, S, Bialas, J, Schmidtke, G, Peter, C, Groettrup, M, Wiesner, S. Deposit date: 2018-04-28 Release date: 2018-08-29 Method: X-RAY DIFFRACTION (1.925 Å) Cite: The structure of the ubiquitin-like modifier FAT10 reveals an alternative targeting mechanism for proteasomal degradation. Nat Commun, 9, 2018

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