Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7R2T
DownloadVisualize
BU of 7r2t by Molmil
SYNJ2BP complex with a phosphorylated Vangl2 peptide at the P-1 position.
Descriptor: CALCIUM ION, GLYCEROL, Synaptojanin-2-binding protein,Annexin, ...
Authors:Carrasco, K, Cousido Siah, A, Gogl, G, Betzi, S, McEwen, A, Kostmann, C, Trave, G.
Deposit date:2022-02-05
Release date:2023-05-17
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:PDZome-wide and structural characterization of the PDZ-binding motif of VANGL2.
Biochim Biophys Acta Proteins Proteom, 1872, 2024
5A2L
DownloadVisualize
BU of 5a2l by Molmil
Crystal structure of scFv-SM3 in complex with APD-CGalNAc-RP
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-alpha-D-galactopyranose, MODIFIED ANTIGEN TN, ...
Authors:Martinez-Saez, N, Castro-Lopez, J, Valero-Gonzalez, J, Madariaga, D, Companon, I, Somovilla, V.J, Salvado, M, Asensio, J.L, Jimenez-Barbero, J, Avenoza, A, Busto, J.H, Bernardes, G.J.L, Peregrina, J.M, Hurtado-Guerrero, R, Corzana, F.
Deposit date:2015-05-20
Release date:2015-06-03
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Deciphering the Non-Equivalence of Serine and Threonine O-Glycosylation Points: Implications for Molecular Recognition of the Tn Antigen by an Anti-Muc1 Antibody.
Angew.Chem.Int.Ed.Engl., 54, 2015
6Z3R
DownloadVisualize
BU of 6z3r by Molmil
Structure of SMG1-8-9 kinase complex bound to UPF1-LSQ
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, MAGNESIUM ION, ...
Authors:Langer, L.M, Gat, Y, Conti, E.
Deposit date:2020-05-21
Release date:2020-06-24
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Structure of substrate-bound SMG1-8-9 kinase complex reveals molecular basis for phosphorylation specificity.
Elife, 9, 2020
7QNT
DownloadVisualize
BU of 7qnt by Molmil
TarM(Se) native
Descriptor: 1,2-ETHANEDIOL, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Guo, Y, Stehle, T.
Deposit date:2021-12-22
Release date:2023-05-10
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Invasive Staphylococcus epidermidis uses a unique processive wall teichoic acid glycosyltransferase to evade immune recognition.
Sci Adv, 9, 2023
8CPG
DownloadVisualize
BU of 8cpg by Molmil
Structure of the AT-Hook 1 peptide from the mammalian HMGA protein in complex with DNA
Descriptor: DNA (5'-D(*CP*GP*TP*TP*AP*AP*TP*TP*AP*AP*CP*G)-3'), High mobility group protein HMG-I/HMG-Y, MAGNESIUM ION
Authors:Boer, D.R, Campos, J.L.
Deposit date:2023-03-02
Release date:2024-09-11
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of the HMGA AT-hook 1 domain bound to the minor groove of AT-rich DNA and inhibition by antikinetoplastid drugs.
Sci Rep, 14, 2024
8VTR
DownloadVisualize
BU of 8vtr by Molmil
Structure of FabS1CE3-EPR-1, an elbow-locked high affinity antibody for the erythropoeitin receptor (orthorhombic form)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, CITRIC ACID, ...
Authors:Singer, A.U, Bruce, H.A, Pavlenco, A, Ploder, L, Luu, G, Blazer, L, Adams, J.J, Sidhu, S.S.
Deposit date:2024-01-26
Release date:2024-07-10
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Antigen-binding fragments with improved crystal lattice packing and enhanced conformational flexibility at the elbow region as crystallization chaperones.
Protein Sci., 33, 2024
5UOF
DownloadVisualize
BU of 5uof by Molmil
Crystal structure of alpha,alpha-trehalose 6-phosphate sythase from Burkholderia multivorans
Descriptor: 1,2-ETHANEDIOL, Alpha,alpha-trehalose-phosphate synthase (UDP-forming), SERINE, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2017-01-31
Release date:2017-02-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of alpha,alpha-trehalose 6-phosphate sythase from Burkholderia multivorans
to be published
8VTP
DownloadVisualize
BU of 8vtp by Molmil
Structure of FabS1CE-EPR-1, a high affinity antibody for the erythropoeitin receptor
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, AMMONIUM ION, ...
Authors:Singer, A.U, Bruce, H.A, Blazer, L, Adams, J.J, Sidhu, S.S.
Deposit date:2024-01-26
Release date:2024-07-10
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Antigen-binding fragments with improved crystal lattice packing and enhanced conformational flexibility at the elbow region as crystallization chaperones.
Protein Sci., 33, 2024
6XQP
DownloadVisualize
BU of 6xqp by Molmil
Structure of human D462-E4 TCR in complex with human MR1-5-OP-RU
Descriptor: 1-deoxy-1-({2,6-dioxo-5-[(E)-propylideneamino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-ribitol, BROMIDE ION, Beta-2-microglobulin, ...
Authors:Awad, W, Rossjohn, J.
Deposit date:2020-07-10
Release date:2020-08-26
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Atypical TRAV1-2 - T cell receptor recognition of the antigen-presenting molecule MR1.
J.Biol.Chem., 295, 2020
5OB9
DownloadVisualize
BU of 5ob9 by Molmil
X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RuII(CO)3Cl2(N3-MIM), MIM=methyl-imidazole (crystals grown using ethylene glycol
Descriptor: 1,2-ETHANEDIOL, Lysozyme C, NITRATE ION, ...
Authors:Pontillo, N, Ferraro, G, Merlino, A.
Deposit date:2017-06-26
Release date:2017-07-26
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Ru-Based CO releasing molecules with azole ligands: interaction with proteins and the CO release mechanism disclosed by X-ray crystallography.
Dalton Trans, 46, 2017
6JOM
DownloadVisualize
BU of 6jom by Molmil
Crystal structure of lipoate protein ligase from Mycoplasma hyopneumoniae
Descriptor: 5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY)(HYDROXY)PHOSPHORYL]ADENOSINE, Lipoate--protein ligase
Authors:Zhang, H, Chen, H, Ma, G.
Deposit date:2019-03-22
Release date:2020-03-25
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Functional Identification and Structural Analysis of a New Lipoate Protein Ligase inMycoplasma hyopneumoniae.
Front Cell Infect Microbiol, 10, 2020
3JST
DownloadVisualize
BU of 3jst by Molmil
Crystal structure of transcriptional coactivator/pterin dehydratase from Brucella Melitensis
Descriptor: 1,2-ETHANEDIOL, Putative pterin-4-alpha-carbinolamine dehydratase
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2009-09-10
Release date:2009-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of transcriptional coactivator/pterin dehydratase from Brucella Melitensis
To be Published
8S1A
DownloadVisualize
BU of 8s1a by Molmil
c-KIT kinase domain in complex with crenolanib
Descriptor: 1-(2-{5-[(3-Methyloxetan-3-yl)methoxy]-1H-benzimidazol-1-yl}quinolin-8-yl)piperidin-4-amine, Mast/stem cell growth factor receptor Kit
Authors:Teuber, A, Mueller, M.P, Rauh, D.
Deposit date:2024-02-15
Release date:2025-09-03
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:c-KIT kinase domain in complex with crenolanib
To Be Published
1FOA
DownloadVisualize
BU of 1foa by Molmil
CRYSTAL STRUCTURE OF N-ACETYLGLUCOSAMINYLTRANSFERASE I
Descriptor: ALPHA-1,3-MANNOSYL-GLYCOPROTEIN BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE, GLYCEROL, MANGANESE (II) ION, ...
Authors:Unligil, U.M, Zhou, S, Yuwaraj, S, Sarkar, M, Schachter, H, Rini, J.M.
Deposit date:2000-08-26
Release date:2001-05-16
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystal structure of rabbit N-acetylglucosaminyltransferase I: catalytic mechanism and a new protein superfamily.
EMBO J., 19, 2000
8KEC
DownloadVisualize
BU of 8kec by Molmil
Cyanophage A-1(L) tail fiber
Descriptor: Long tail fiber, short tail fiber
Authors:Yu, R.C, Li, Q, Zhou, C.Z.
Deposit date:2023-08-11
Release date:2024-04-10
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structure of the intact tail machine of Anabaena myophage A-1(L).
Nat Commun, 15, 2024
5LHB
DownloadVisualize
BU of 5lhb by Molmil
POLYADPRIBOSYL GLYCOSIDASE IN COMPLEX WITH PDD00017262
Descriptor: 1-(cyclopropylmethyl)-6-[[(1-methylcyclopropyl)amino]-bis(oxidanyl)-$l^{4}-sulfanyl]-3-[(2-methyl-1,3-thiazol-5-yl)methyl]quinazoline-2,4-dione, DIMETHYL SULFOXIDE, Poly(ADP-ribose) glycohydrolase, ...
Authors:Tucker, J, Barkauskaite, E.
Deposit date:2016-07-10
Release date:2016-10-12
Last modified:2025-08-06
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:First-in-Class Chemical Probes against Poly(ADP-ribose) Glycohydrolase (PARG) Inhibit DNA Repair with Differential Pharmacology to Olaparib.
ACS Chem. Biol., 11, 2016
8S14
DownloadVisualize
BU of 8s14 by Molmil
c-KIT kinase domain in complex with sunitinib
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Mast/stem cell growth factor receptor Kit, ...
Authors:Teuber, A, Niggenaber, J, Landel, I, Mueller, M.P, Rauh, D.
Deposit date:2024-02-15
Release date:2025-09-03
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:c-KIT kinase domain in complex with sunitinib
To Be Published
8OFL
DownloadVisualize
BU of 8ofl by Molmil
Coproporphyrin III - LmCpfC complex soaked 4min with Fe2+
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Coproporphyrin III ferrochelatase, ...
Authors:Gabler, T, Hofbauer, S.
Deposit date:2023-03-16
Release date:2023-04-05
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Iron insertion into coproporphyrin III-ferrochelatase complex: Evidence for an intermediate distorted catalytic species.
Protein Sci., 32, 2023
6XRM
DownloadVisualize
BU of 6xrm by Molmil
Crystal structure of human PI3K-gamma in complex with Compound 4
Descriptor: 5-[2-amino-3-(1-methyl-1H-pyrazol-4-yl)pyrazolo[1,5-a]pyrimidin-5-yl]-2-[(1S)-1-cyclopropylethyl]-7-(trifluoromethyl)-2,3-dihydro-1H-isoindol-1-one, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform, SULFATE ION
Authors:Walker, N.P, Jeffrey, J.L.
Deposit date:2020-07-13
Release date:2020-09-16
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Discovery of Potent and Selective PI3K gamma Inhibitors.
J.Med.Chem., 63, 2020
5B0X
DownloadVisualize
BU of 5b0x by Molmil
Crystal structure of the CK2a/benzoic acid derivative complex
Descriptor: 4-[2-[(4-methoxyphenyl)carbonylamino]-1,3-thiazol-5-yl]benzoic acid, Casein kinase II subunit alpha
Authors:Kinoshita, T, Nakanishi, I.
Deposit date:2015-11-13
Release date:2016-03-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-activity relationship study of 4-(thiazol-5-yl)benzoic acid derivatives as potent protein kinase CK2 inhibitors
Bioorg.Med.Chem., 24, 2016
6HMX
DownloadVisualize
BU of 6hmx by Molmil
RIP2 Kinase Catalytic Domain complex with N(4,5dimethyl1Hpyrazol3yl)7methoxy6(2methylpropane2sulfonyl)quinolin4amine
Descriptor: 6-~{tert}-butylsulfonyl-~{N}-(3,4-dimethyl-1~{H}-pyrazol-5-yl)-7-methoxy-quinolin-4-amine, Receptor-interacting serine/threonine-protein kinase 2
Authors:Convery, M.A, Haile, P.A.
Deposit date:2018-09-13
Release date:2018-11-07
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Identification of Quinoline-Based RIP2 Kinase Inhibitors with an Improved Therapeutic Index to the hERG Ion Channel.
ACS Med Chem Lett, 9, 2018
1NUV
DownloadVisualize
BU of 1nuv by Molmil
The Leadzyme Ribozyme Bound to Mg(H2O)6(II) and Sr(II) at 1.8 A resolution
Descriptor: 5'-R(*CP*GP*GP*AP*CP*CP*GP*AP*GP*CP*CP*AP*G)-3', 5'-R(*GP*CP*UP*GP*GP*GP*AP*GP*UP*CP*C)-3', MAGNESIUM ION, ...
Authors:Wedekind, J.E, Mckay, D.B.
Deposit date:2003-02-01
Release date:2003-08-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Crystal structure of the leadzyme at 1.8 A resolution: metal ion binding and the implications for catalytic mechanism and allo site ion regulation.
BIOCHEMISTRY, 42, 2003
5LOT
DownloadVisualize
BU of 5lot by Molmil
Crystal structure of SCP2 thiolase from Leishmania mexicana. Complex of the C123A mutant with acetyl-CoA.
Descriptor: 3-ketoacyl-CoA thiolase-like protein, ACETYL COENZYME *A
Authors:Harijan, R.K, Kiema, T.-R, Wierenga, R.K.
Deposit date:2016-08-09
Release date:2017-01-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystallographic substrate binding studies of Leishmania mexicana SCP2-thiolase (type-2): unique features of oxyanion hole-1.
Protein Eng. Des. Sel., 30, 2017
6S7B
DownloadVisualize
BU of 6s7b by Molmil
Crystal structure of CARM1 in complex with inhibitor UM249
Descriptor: 1-[4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(3-azanylpropyl)amino]butyl]guanidine, Histone-arginine methyltransferase CARM1
Authors:Gunnell, E.A, Muhsen, U, Dowden, J, Dreveny, I.
Deposit date:2019-07-04
Release date:2020-03-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.659 Å)
Cite:Structural and biochemical evaluation of bisubstrate inhibitors of protein arginine N-methyltransferases PRMT1 and CARM1 (PRMT4).
Biochem.J., 477, 2020
7A5H
DownloadVisualize
BU of 7a5h by Molmil
Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1
Descriptor: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ...
Authors:Desai, N, Yang, H, Chandrasekaran, V, Kazi, R, Minczuk, M, Ramakrishnan, V.
Deposit date:2020-08-21
Release date:2020-12-23
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Elongational stalling activates mitoribosome-associated quality control.
Science, 370, 2020

242842

PDB entries from 2025-10-08

PDB statisticsPDBj update infoContact PDBjnumon