Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4MQ4
DownloadVisualize
BU of 4mq4 by Molmil
Crystal Structure of hPNMT in Complex with bisubstrate inhibitor N-(3-((((2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)thio)propyl)-1,2,3,4-tetrahydroisoquinoline-3-carboxamide
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-S-(3-{[(3R)-1,2,3,4-tetrahydroisoquinolin-3-ylcarbonyl]amino}propyl)-5'-thioadenosine, Phenylethanolamine N-methyltransferase
Authors:Bart, A.G, Scott, E.E.
Deposit date:2013-09-15
Release date:2014-10-15
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.2042 Å)
Cite:To be Published
To be Published
6DCL
DownloadVisualize
BU of 6dcl by Molmil
Crystal structure of UP1 bound to pri-miRNA-18a terminal loop
Descriptor: 1,2-ETHANEDIOL, Heterogeneous nuclear ribonucleoprotein A1, RNA (5'-R(*AP*GP*UP*AP*GP*AP*UP*UP*AP*GP*C)-3')
Authors:Kooshapur, H, Sattler, M.
Deposit date:2018-05-07
Release date:2018-06-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.497 Å)
Cite:Structural basis for terminal loop recognition and stimulation of pri-miRNA-18a processing by hnRNP A1.
Nat Commun, 9, 2018
7O1N
DownloadVisualize
BU of 7o1n by Molmil
Crystal Structure of Human Neuropilin-1 b1 Domain mutant - Y297A
Descriptor: Neuropilin-1
Authors:Djordjevic, S, Chandanani, J, Faleeva, M, Pinotsis, N.
Deposit date:2021-03-29
Release date:2022-04-13
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Crystal Structure of Human Neuropilin-1 b1 Domain mutant - Y297A
To Be Published
7A3R
DownloadVisualize
BU of 7a3r by Molmil
Crystal structure of dengue 1 virus envelope glycoprotein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Core protein, alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Sharma, A, Vaney, M.C, Guardado-Calvo, P, Duquerroy, S, Rouvinski, A, Rey, F.A.
Deposit date:2020-08-18
Release date:2021-12-08
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:The epitope arrangement on flavivirus particles contributes to Mab C10's extraordinary neutralization breadth across Zika and dengue viruses.
Cell, 184, 2021
3U4U
DownloadVisualize
BU of 3u4u by Molmil
Casein kinase 2 in complex with AZ-Inhibitor
Descriptor: 3-{5-(acetylamino)-3-[3-cyano-7-(cyclopropylamino)pyrazolo[1,5-a]pyrimidin-5-yl]-1H-indol-1-yl}propanoic acid, CHLORIDE ION, Casein kinase II subunit alpha
Authors:Larsen, N.A, Dowling, J.
Deposit date:2011-10-10
Release date:2012-08-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Potent and Selective Inhibitors of CK2 Kinase Identified through Structure-Guided Hybridization.
ACS Med Chem Lett, 3, 2012
8QQA
DownloadVisualize
BU of 8qqa by Molmil
human carbonic anhydrase II in complex with Bithionol
Descriptor: 1,2-ETHANEDIOL, 2,2'-sulfanediylbis(4,6-dichlorophenol), Carbonic anhydrase 2, ...
Authors:Angeli, A, Ferraroni, M.
Deposit date:2023-10-04
Release date:2024-10-16
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (1.346 Å)
Cite:Unprecedented carbonic anhydrase inhibition mechanism: Targeting histidine 64 side chain through a halogen bond.
Arch Pharm, 358, 2025
4MO8
DownloadVisualize
BU of 4mo8 by Molmil
The crystal structure of the human carbonic anhydrase II in complex with N-[2-(2-methyl-5-nitro-1H-imidazol-1-yl)ethyl]sulfamide
Descriptor: Carbonic anhydrase 2, N-[2-(2-methyl-5-nitro-1H-imidazol-1-yl)ethyl]sulfamide, ZINC ION
Authors:Alterio, V, De Simone, G.
Deposit date:2013-09-11
Release date:2013-10-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Hypoxia-Targeting Carbonic Anhydrase IX Inhibitors by a New Series of Nitroimidazole-Sulfonamides/Sulfamides/Sulfamates.
J.Med.Chem., 56, 2013
4MO4
DownloadVisualize
BU of 4mo4 by Molmil
Crystal structure of AnmK bound to AMPPCP
Descriptor: Anhydro-N-acetylmuramic acid kinase, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
Authors:Bacik, J.P, Mark, B.L.
Deposit date:2013-09-11
Release date:2014-01-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Conformational Itinerary of Pseudomonas aeruginosa 1,6-Anhydro-N-acetylmuramic Acid Kinase during Its Catalytic Cycle.
J.Biol.Chem., 289, 2014
4Y9X
DownloadVisualize
BU of 4y9x by Molmil
Crystal structure of glucosyl-3-phosphoglycerate synthase from Mycobacterium tuberculosis in complex with Mn2+, uridine-diphosphate-glucose (UDP-Glc) and phosphoglyceric acid (PGA) - GpgS Mn2+ UDP-Glc PGA-3
Descriptor: 1,2-ETHANEDIOL, 3-PHOSPHOGLYCERIC ACID, CHLORIDE ION, ...
Authors:Albesa-Jove, D, Rodrigo-Unzueta, A, Cifuente, J.O, Urresti, S, Comino, N, Sancho-Vaello, E, Guerin, M.E.
Deposit date:2015-02-17
Release date:2015-07-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.637 Å)
Cite:A Native Ternary Complex Trapped in a Crystal Reveals the Catalytic Mechanism of a Retaining Glycosyltransferase.
Angew.Chem.Int.Ed.Engl., 54, 2015
4MRG
DownloadVisualize
BU of 4mrg by Molmil
Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
Descriptor: 1,2,3,4-tetrahydroisoquinolin-5-amine, CD44 antigen, DIMETHYL SULFOXIDE, ...
Authors:Liu, L.K, Finzel, B.
Deposit date:2013-09-17
Release date:2014-04-16
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Fragment-Based Identification of an Inducible Binding Site on Cell Surface Receptor CD44 for the Design of Protein-Carbohydrate Interaction Inhibitors.
J.Med.Chem., 57, 2014
6SWU
DownloadVisualize
BU of 6swu by Molmil
Crystal structure of the TPR domain of KLC1 in complex with an engineered high-affinity cargo peptide.
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Kinesin light chain 1,Kinesin light chain 1,TPR domain of kinesin light chain 1 in complex with an engineered high-affinity cargo peptide of sequence TVFTTEDIYEWDDSAI
Authors:Chegkazi, M.S, Steiner, R.A.
Deposit date:2019-09-23
Release date:2020-09-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.849 Å)
Cite:Fragment-linking peptide design yields a high-affinity ligand for microtubule-based transport.
Cell Chem Biol, 28, 2021
6SZF
DownloadVisualize
BU of 6szf by Molmil
Solution structure of the amyloid beta-peptide (1-42)
Descriptor: Amyloid-beta precursor protein
Authors:Grimaldi, M, Santoro, A, Stillitano, I, Buonocore, M, D'Ursi, A.M.
Deposit date:2019-10-02
Release date:2020-10-14
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Exploring the Early Stages of the Amyloid A beta (1-42) Peptide Aggregation Process: An NMR Study.
Pharmaceuticals, 14, 2021
7AYP
DownloadVisualize
BU of 7ayp by Molmil
Structure of a GH11 domain refined from the X-ray diffraction data of a GH11-CBM36-1 crystal.
Descriptor: Endo-1,4-beta-xylanase
Authors:Anye, V, Schubert, W.D.
Deposit date:2020-11-12
Release date:2020-11-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.70001292 Å)
Cite:Structural and biophysical characterization of the multidomain xylanase Xyl.
Plos One, 17, 2022
4N0T
DownloadVisualize
BU of 4n0t by Molmil
Core structure of the U6 small nuclear ribonucleoprotein at 1.7 Angstrom resolution
Descriptor: SULFATE ION, U4/U6 snRNA-associated-splicing factor PRP24, U6 snRNA
Authors:Montemayor, E.J, Curran, E.C, Liao, H, Andrews, K.L, Treba, C.N, Butcher, S.E, Brow, D.A.
Deposit date:2013-10-02
Release date:2014-05-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Core structure of the U6 small nuclear ribonucleoprotein at 1.7- angstrom resolution.
Nat.Struct.Mol.Biol., 21, 2014
4N9W
DownloadVisualize
BU of 4n9w by Molmil
Crystal structure of phosphatidyl mannosyltransferase PimA
Descriptor: 1,2-ETHANEDIOL, GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase, GUANOSINE-5'-DIPHOSPHATE
Authors:Giganti, D, Albesa-Jove, D, Bellinzoni, M, Guerin, M.E, Alzari, P.M.
Deposit date:2013-10-21
Release date:2014-11-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Secondary structure reshuffling modulates glycosyltransferase function at the membrane.
Nat.Chem.Biol., 11, 2015
3U8E
DownloadVisualize
BU of 3u8e by Molmil
Crystal Structure of Cysteine Protease from Bulbs of Crocus sativus at 1.3 A Resolution
Descriptor: GLYCEROL, Papain-like Cysteine Protease, SODIUM ION, ...
Authors:Iqbal, S, Akrem, A, Buck, F, Perbandt, M, Banumathi, S, Betzel, C.
Deposit date:2011-10-17
Release date:2011-10-26
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Crystal Structure of A Papain-like Cysteine Protease from Bulbs of Crocus sativum at 1.3 A resolution
To be Published
8CME
DownloadVisualize
BU of 8cme by Molmil
Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Membrane peptide M176-190
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, HLA class II histocompatibility antigen, ...
Authors:MacLachlan, B.J, Mason, G.H, Sourfield, D.O, Godkin, A.J, Rizkallah, P.J.
Deposit date:2023-02-19
Release date:2023-07-26
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Structural definition of HLA class II-presented SARS-CoV-2 epitopes reveals a mechanism to escape pre-existing CD4 + T cell immunity.
Cell Rep, 42, 2023
8CMD
DownloadVisualize
BU of 8cmd by Molmil
Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Spike peptide S761-775
Descriptor: 1,2-ETHANEDIOL, HLA class II histocompatibility antigen, DR alpha chain, ...
Authors:MacLachlan, B.J, Mason, G.H, Sourfield, D.O, Godkin, A.J, Rizkallah, P.J.
Deposit date:2023-02-19
Release date:2023-07-26
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Structural definition of HLA class II-presented SARS-CoV-2 epitopes reveals a mechanism to escape pre-existing CD4 + T cell immunity.
Cell Rep, 42, 2023
7AJB
DownloadVisualize
BU of 7ajb by Molmil
bovine ATP synthase dimer state1:state1
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ATP synthase F(0) complex subunit B1, mitochondrial, ...
Authors:Spikes, T.E, Montgomery, M.G, Walker, J.E.
Deposit date:2020-09-29
Release date:2021-02-03
Last modified:2025-04-09
Method:ELECTRON MICROSCOPY (9.2 Å)
Cite:Interface mobility between monomers in dimeric bovine ATP synthase participates in the ultrastructure of inner mitochondrial membranes.
Proc.Natl.Acad.Sci.USA, 118, 2021
8QCE
DownloadVisualize
BU of 8qce by Molmil
Dispersin from Lactiplantibacillus paraplantarum DispLp
Descriptor: 1,2-ETHANEDIOL, 6-ACETAMIDO-6-DEOXY-CASTANOSPERMINE, DI(HYDROXYETHYL)ETHER, ...
Authors:Males, A, Moroz, O.V, Blagova, E, Munch, A, Hansen, G.H, Johansen, A.H, Ostergaard, L.H, Segura, D.R, Eddenden, A, Due, A.V, Gudmand, M, Salomon, J, Sorensen, S.R, Cairo, J.L.F, Pache, R.A, Vejborg, R.M, Davies, G.J, Wilson, K.S.
Deposit date:2023-08-25
Release date:2025-03-12
Last modified:2025-03-19
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Expansion of the diversity of dispersin scaffolds.
Acta Crystallogr D Struct Biol, 81, 2025
3TM9
DownloadVisualize
BU of 3tm9 by Molmil
Y29A mutant of Vitreoscilla stercoraria hemoglobin
Descriptor: 1,2-ETHANEDIOL, Bacterial hemoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Ratakonda, S, Anand, A, Dikshit, K, Stark, B.C, Howard, A.J.
Deposit date:2011-08-31
Release date:2014-04-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Crystallographic structure determination of B10 mutants of Vitreoscilla hemoglobin: role of Tyr29 (B10) in the structure of the ligand-binding site.
Acta Crystallogr.,Sect.F, 69, 2013
3TM8
DownloadVisualize
BU of 3tm8 by Molmil
Bd1817, a HDG"Y"P protein from Bdellovibrio bacteriovorus
Descriptor: 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, FE (III) ION, ...
Authors:Lovering, A.L.
Deposit date:2011-08-31
Release date:2011-10-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:The structure of an unconventional HD-GYP protein from Bdellovibrio reveals the roles of conserved residues in this class of cyclic-di-GMP phosphodiesterases.
MBio, 2, 2011
6T69
DownloadVisualize
BU of 6t69 by Molmil
Crystal structure of Toxoplasma gondii Morn1(V shape)
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Membrane occupation and recognition nexus protein MORN1, ...
Authors:Grishkovskaya, I, Kostan, J, Sajko, S, Morriswood, B, Djinovic-Carugo, K.
Deposit date:2019-10-18
Release date:2020-11-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats.
Plos One, 15, 2020
4MTX
DownloadVisualize
BU of 4mtx by Molmil
Structure of the ERS1 dimerization and histidine phosphotransfer domain from Arabidopsis thaliana
Descriptor: Ethylene response sensor 1
Authors:Mayerhofer, H, Mueller-Dieckmann, J.
Deposit date:2013-09-20
Release date:2014-10-01
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural Model of the Cytosolic Domain of the Plant Ethylene Receptor 1 (ETR1).
J.Biol.Chem., 290, 2015
3TRR
DownloadVisualize
BU of 3trr by Molmil
Crystal structure of a probable enoyl-CoA hydratase/isomerase from Mycobacterium abscessus
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2011-09-09
Release date:2011-09-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Increasing the structural coverage of tuberculosis drug targets.
Tuberculosis (Edinb), 95, 2015

242842

PDB entries from 2025-10-08

PDB statisticsPDBj update infoContact PDBjnumon