PDB: 10962 resultsInfo pagesStatus searchChemie searchBIRD

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5J0G	Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form, circular permutant P7/8 Descriptor: OXIDOREDUCTASE,Superoxide dismutase [Cu-Zn] Authors: Wang, H, Lang, L, Logan, D, Danielsson, J, Oliveberg, M. Deposit date: 2016-03-28 Release date: 2017-02-01 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Tricking a Protein To Swap Strands. J. Am. Chem. Soc., 138, 2016
3KEQ	Crystal structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae complexed with NAD+ Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Redox-sensing transcriptional repressor rex Authors: Thiyagarajan, S, Logan, D, von Wachenfeldt, C. Deposit date: 2009-10-26 Release date: 2010-11-10 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.4 Å) Cite: NAD+ pool depletion as a signal for the Rex regulon involved in Streptococcus agalactiae virulence. Plos Pathog., 17, 2021
7BT2	Crystal structure of the SERCA2a in the E2.ATP state Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, ADENOSINE-5'-TRIPHOSPHATE, ... Authors: Kabashima, Y, Ogawa, H, Nakajima, R, Toyoshima, C. Deposit date: 2020-03-31 Release date: 2020-07-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.00002861 Å) Cite: What ATP binding does to the Ca2+pump and how nonproductive phosphoryl transfer is prevented in the absence of Ca2. Proc.Natl.Acad.Sci.USA, 117, 2020
7VML	Structure of recombinant RyR2 (EGTA dataset, class 1&2, closed state) Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ZINC ION Authors: Kobayashi, T, Tsutsumi, A, Kurebayashi, N, Kodama, M, Kikkawa, M, Murayama, T, Ogawa, H. Deposit date: 2021-10-09 Release date: 2022-08-10 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Molecular basis for gating of cardiac ryanodine receptor explains the mechanisms for gain- and loss-of function mutations. Nat Commun, 13, 2022
7VMN	Structure of recombinant RyR2 (EGTA dataset, class 2, closed state) Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ZINC ION Authors: Kobayashi, T, Tsutsumi, A, Kurebayashi, N, Kodama, M, Kikkawa, M, Murayama, T, Ogawa, H. Deposit date: 2021-10-09 Release date: 2022-08-10 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Molecular basis for gating of cardiac ryanodine receptor explains the mechanisms for gain- and loss-of function mutations. Nat Commun, 13, 2022
7VMO	Structure of recombinant RyR2 (Ca2+ dataset, class 1, open state) Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ... Authors: Kobayashi, T, Tsutsumi, A, Kurebayashi, N, Kodama, M, Kikkawa, M, Murayama, T, Ogawa, H. Deposit date: 2021-10-09 Release date: 2022-08-10 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Molecular basis for gating of cardiac ryanodine receptor explains the mechanisms for gain- and loss-of function mutations. Nat Commun, 13, 2022
7VMP	Structure of recombinant RyR2 (Ca2+ dataset, class 2, open state) Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ... Authors: Kobayashi, T, Tsutsumi, A, Kurebayashi, N, Kodama, M, Kikkawa, M, Murayama, T, Ogawa, H. Deposit date: 2021-10-09 Release date: 2022-08-10 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Molecular basis for gating of cardiac ryanodine receptor explains the mechanisms for gain- and loss-of function mutations. Nat Commun, 13, 2022
7VMQ	Structure of recombinant RyR2 (Ca2+ dataset, class 3, open state) Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ... Authors: Kobayashi, T, Tsutsumi, A, Kurebayashi, N, Kodama, M, Kikkawa, M, Murayama, T, Ogawa, H. Deposit date: 2021-10-09 Release date: 2022-08-10 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Molecular basis for gating of cardiac ryanodine receptor explains the mechanisms for gain- and loss-of function mutations Nat Commun, 13, 2022
7VMM	Structure of recombinant RyR2 (EGTA dataset, class 1, closed state) Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ZINC ION Authors: Kobayashi, T, Tsutsumi, A, Kurebayashi, N, Kodama, M, Kikkawa, M, Murayama, T, Ogawa, H. Deposit date: 2021-10-09 Release date: 2022-08-10 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Molecular basis for gating of cardiac ryanodine receptor explains the mechanisms for gain- and loss-of function mutations. Nat Commun, 13, 2022
7VMS	Structure of recombinant RyR2 mutant K4593A (Ca2+ dataset) Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ... Authors: Kobayashi, T, Tsutsumi, A, Kurebayashi, N, Kodama, M, Kikkawa, M, Murayama, T, Ogawa, H. Deposit date: 2021-10-09 Release date: 2022-08-10 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Molecular basis for gating of cardiac ryanodine receptor explains the mechanisms for gain- and loss-of function mutations Nat Commun, 13, 2022
7BWI	Solution structure of recombinant APETx1 Descriptor: Kappa-actitoxin-Ael2a Authors: Matsumura, K, Kobayashi, N, Kurita, J, Nishimura, Y, Yokogawa, M, Imai, S, Shimada, I, Osawa, M. Deposit date: 2020-04-14 Release date: 2020-12-23 Last modified: 2021-07-14 Method: SOLUTION NMR Cite: Mechanism of hERG inhibition by gating-modifier toxin, APETx1, deduced by functional characterization. Bmc Mol Cell Biol, 22, 2021
7VMR	Structure of recombinant RyR2 mutant K4593A (EGTA dataset) Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ZINC ION Authors: Kobayashi, T, Tsutsumi, A, Kurebayashi, N, Kodama, M, Kikkawa, M, Murayama, T, Ogawa, H. Deposit date: 2021-10-09 Release date: 2022-08-10 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Molecular basis for gating of cardiac ryanodine receptor explains the mechanisms for gain- and loss-of function mutations. Nat Commun, 13, 2022
1C9Z	D232-CGTACG Descriptor: 1,3-DI[[[10-METHOXY-7H-PYRIDO[4,3-C]CARBAZOL-2-IUMYL]-ETHYL]-PIPERIDIN-4-YL]-PROPANE, 5'-D(*CP*GP*TP*AP*CP*G)-3' Authors: Williams, L.D. Deposit date: 1999-08-03 Release date: 2000-04-02 Last modified: 2024-04-17 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Effects of cationic charge on three-dimensional structures of intercalative complexes: structure of a bis-intercalated DNA complex solved by MAD phasing. Curr.Med.Chem., 7, 2000
3J9L	Structure of Dark apoptosome from Drosophila melanogaster Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Apaf-1 related killer DARK Authors: Pang, Y, Bai, X, Yan, C, Hao, Q, Chen, Z, Wang, J, Scheres, S.H.W, Shi, Y. Deposit date: 2015-02-04 Release date: 2015-02-25 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structure of the apoptosome: mechanistic insights into activation of an initiator caspase from Drosophila. Genes Dev., 29, 2015
4H4A	Crystal structure of the C-terminal domain of Drosophila melanogaster Zucchini Descriptor: Mitochondrial cardiolipin hydrolase Authors: Voigt, F, Schulz, E.C, Barabas, O. Deposit date: 2012-09-17 Release date: 2012-11-07 Last modified: 2017-11-15 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of the primary piRNA biogenesis factor Zucchini reveals similarity to the bacterial PLD endonuclease Nuc. Rna, 18, 2012
1H7B	Structural basis for allosteric substrate specificity regulation in class III ribonucleotide reductases, native NRDD Descriptor: ANAEROBIC RIBONUCLEOTIDE-TRIPHOSPHATE REDUCTASE LARGE CHAIN, PHOSPHATE ION Authors: Larsson, K.-M, Andersson, J, Sjoeberg, B.-M, Nordlund, P, Logan, D.T. Deposit date: 2001-07-04 Release date: 2002-03-28 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Structural Basis for Allosteric Substrate Specificty Regulation in Anaerobic Ribonucleotide Reductase Structure, 9, 2001
3ZZY	Crystal structure of a Raver1 PRI3 peptide in complex with polypyrimidine tract binding protein RRM2 Descriptor: POLYPYRIMIDINE TRACT-BINDING PROTEIN 1, RIBONUCLEOPROTEIN PTB-BINDING 1 Authors: Joshi, A, Kotik-Kogan, O, Curry, S. Deposit date: 2011-09-06 Release date: 2011-12-28 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Crystallographic Analysis of Polypyrimidine Tract-Binding Protein-Raver1 Interactions Involved in Regulation of Alternative Splicing. Structure, 19, 2011
1CP8	NMR STRUCTURE OF DNA (5'-D(TTGGCCAA)2-3') COMPLEXED WITH NOVEL ANTITUMOR DRUG UCH9 Descriptor: 1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-(SEC-BUTYL)-ANTHRACENE, DNA (5'-D(P*TP*TP*GP*GP*CP*CP*AP*A)-3'), MAGNESIUM ION, ... Authors: Katahira, R, Katahira, M, Yamashita, Y, Ogawa, H, Kyogoku, Y, Yoshida, M. Deposit date: 1999-06-11 Release date: 1999-07-01 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Solution structure of the novel antitumor drug UCH9 complexed with d(TTGGCCAA)2 as determined by NMR. Nucleic Acids Res., 26, 1998
1CRY	APPLICATION OF AN AUTOMATIC MOLECULAR REPLACEMENT PROCEDURE TO CRYSTAL STRUCTURE OF CYTOCHROME C2 FROM RHODOPSEUDOMONAS VIRIDIS Descriptor: CYTOCHROME C2, HEME C Authors: Miki, K, Sogabe, S. Deposit date: 1993-12-27 Release date: 1994-04-30 Last modified: 2021-03-03 Method: X-RAY DIFFRACTION (3 Å) Cite: Application of an automatic molecular-replacement procedure to crystal structure analysis of cytochrome c2 from Rhodopseudomonas viridis. Acta Crystallogr.,Sect.D, 50, 1994
1GV2	CRYSTAL STRUCTURE OF C-MYB R2R3 Descriptor: MYB PROTO-ONCOGENE PROTEIN, SODIUM ION Authors: Tahirov, T.H, Ogata, K. Deposit date: 2002-02-05 Release date: 2003-07-03 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.68 Å) Cite: Crystal Structure of C-Myb DNA-Binding Domain: Specific Na+ Binding and Correlation with NMR Structure To be Published
1H79	STRUCTURAL BASIS FOR ALLOSTERIC SUBSTRATE SPECIFICITY REGULATION IN CLASS III RIBONUCLEOTIDE REDUCTASES: NRDD IN COMPLEX WITH DTTP Descriptor: ANAEROBIC RIBONUCLEOTIDE-TRIPHOSPHATE REDUCTASE LARGE CHAIN, FE (II) ION, MAGNESIUM ION, ... Authors: Larsson, K.-M, Andersson, J, Sjoeberg, B.-M, Nordlund, P, Logan, D.T. Deposit date: 2001-07-04 Release date: 2002-03-28 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural Basis for Allosteric Substrate Specificty Regulation in Anaerobic Ribonucleotide Reductase Structure, 9, 2001
1GUU	CRYSTAL STRUCTURE OF C-MYB R1 Descriptor: MYB PROTO-ONCOGENE PROTEIN, SODIUM ION Authors: Tahirov, T.H, Ogata, K. Deposit date: 2002-01-30 Release date: 2003-06-26 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal Structure of C-Myb DNA-Binding Domain: Specific Na+ Binding and Correlation with NMR Structure To be Published
1H7A	Structural basis for allosteric substrate specificity regulation in class III ribonucleotide reductases: NRDD in complex with dATP Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, ANAEROBIC RIBONUCLEOTIDE-TRIPHOSPHATE REDUCTASE LARGE CHAIN, FE (II) ION, ... Authors: Larsson, K.-M, Andersson, J, Sjoeberg, B.-M, Nordlund, P, Logan, D.T. Deposit date: 2001-07-04 Release date: 2002-03-28 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Structural Basis for Allosteric Substrate Specificty Regulation in Anaerobic Ribonucleotide Reductase Structure, 9, 2001
1HJB	CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER Descriptor: CCAAT/ENHANCER BINDING PROTEIN BETA, DNA (5'-(*CP*CP*GP*CP*AP*AP*CP*CP*AP*CP* AP*GP*AP*GP*TP*TP*TP*GP*GP*AP*AP*AP*TP*CP*TP*T)-3'), DNA (5'-(*GP*AP*AP*GP*AP*TP*TP*TP*CP*CP* AP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP*TP*TP*GP*CP*G)-3'), ... Authors: Tahirov, T.H, Ogata, K. Deposit date: 2001-01-11 Release date: 2001-03-09 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural Analyses of DNA Recognition by the Aml1/Runx-1 Runt Domain and its Allosteric Control by Cbfbeta Cell(Cambridge,Mass.), 104, 2001
6O2R	Deacetylated Microtubules Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Eshun-Wilson, L, Zhang, R, Portran, D, Nachury, M.V, Toso, D, Lohr, T, Vendruscolo, M, Bonomi, M, Fraser, J.S, Nogales, E. Deposit date: 2019-02-24 Release date: 2019-05-22 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Effects of alpha-tubulin acetylation on microtubule structure and stability. Proc.Natl.Acad.Sci.USA, 116, 2019

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