Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8CEY
DownloadVisualize
BU of 8cey by Molmil
Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH11233
Descriptor: N-glycosylase/DNA lyase, NICKEL (II) ION, ~{N}-(3,3-dimethylcyclobutyl)imidazo[5,1-b][1,3]thiazole-3-carboxamide
Authors:Kosenina, S, Scaletti, E.R, Stenmark, P.
Deposit date:2023-02-02
Release date:2024-02-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH11233
To Be Published
6ERE
DownloadVisualize
BU of 6ere by Molmil
Crystal structure of a computationally designed colicin endonuclease and immunity pair colEdes3/Imdes3
Descriptor: Immunity, PHOSPHATE ION, colicin
Authors:Netzer, R, Listov, D, Dym, O, Albeck, S, Knop, O, Fleishman, S.J.
Deposit date:2017-10-18
Release date:2019-01-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Ultrahigh specificity in a network of computationally designed protein-interaction pairs.
Nat Commun, 9, 2018
8CDS
DownloadVisualize
BU of 8cds by Molmil
Crystal structure of the xhNup93-Nb4i VHH antibody
Descriptor: 1,2-ETHANEDIOL, 5-Nup93 inhibitory VHH antibody, DI(HYDROXYETHYL)ETHER
Authors:Guttler, T, Colom, M.S, Gorlich, D.
Deposit date:2023-02-01
Release date:2024-02-21
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:A checkpoint function for Nup98 in nuclear pore formation suggested by novel inhibitory nanobodies.
Embo J., 43, 2024
6UYU
DownloadVisualize
BU of 6uyu by Molmil
Crystal structure of K45-acetylated SUMO1 in complex with phosphorylated PML-SIM
Descriptor: Protein PML, Small ubiquitin-related modifier 1
Authors:Wahba, H.M, Gagnon, C, Mascle, X.H, Lussier-Price, M, Cappadocia, L, Sakaguchi, K, Omichinski, J.G.
Deposit date:2019-11-14
Release date:2019-11-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Acetylation of SUMO1 Alters Interactions with the SIMs of PML and Daxx in a Protein-Specific Manner.
Structure, 28, 2020
5IEI
DownloadVisualize
BU of 5iei by Molmil
X-ray crystallographic structure of a high affinity IGF2 antagonist (Domain11 AB5 RHH) based on human IGF2R domain 11
Descriptor: 1,2-ETHANEDIOL, Cation-independent mannose-6-phosphate receptor, GLYCEROL, ...
Authors:Nicholls, R.D, Williams, C, Strickland, M, Frago, S, Hassan, A.B, Crump, M.P.
Deposit date:2016-02-25
Release date:2016-05-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Functional evolution of IGF2:IGF2R domain 11 binding generates novel structural interactions and a specific IGF2 antagonist.
Proc.Natl.Acad.Sci.USA, 113, 2016
5FRF
DownloadVisualize
BU of 5frf by Molmil
Solution structure of reduced and zinc-bound RsrA
Descriptor: ANTI-SIGMA FACTOR RSRA, ZINC ION
Authors:Zdanowski, K, Pecqueur, L, Werner, J, Potts, J.R, Kleanthous, C.
Deposit date:2015-12-17
Release date:2016-08-03
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The Anti-Sigma Factor Rsra Responds to Oxidative Stress by Reburying its Hydrophobic Core.
Nat.Commun., 7, 2016
5IO3
DownloadVisualize
BU of 5io3 by Molmil
Crystal structure of the legionella pneumophila effector protein RavZ - I422
Descriptor: Uncharacterized protein RavZ
Authors:Kwon, D.H, Kim, L, Kim, B.-W, Hong, S.B, Song, H.K.
Deposit date:2016-03-08
Release date:2016-11-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:The 1:2 complex between RavZ and LC3 reveals a mechanism for deconjugation of LC3 on the phagophore membrane
Autophagy, 13, 2017
6URQ
DownloadVisualize
BU of 6urq by Molmil
Complex structure of human poly-ADP-ribosyltransferase TNKS1 ARC2-ARC3 and P antigen family member 4 (PAGE4)
Descriptor: GLYCEROL, P antigen family member 4, Poly [ADP-ribose] polymerase tankyrase-1, ...
Authors:Zheng, Y, Koirala, S, Miller, D, Potts, P.R.
Deposit date:2019-10-24
Release date:2020-07-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Tissue-Specific Regulation of the Wnt/ beta-Catenin Pathway by PAGE4 Inhibition of Tankyrase.
Cell Rep, 32, 2020
5UEC
DownloadVisualize
BU of 5uec by Molmil
Crystal Structure of CYP2B6 (Y226H/K262R) in complex with myrtenyl bromide.
Descriptor: (1S,5R)-2-(bromomethyl)-6,6-dimethylbicyclo[3.1.1]hept-2-ene, 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE, Cytochrome P450 2B6, ...
Authors:Shah, M.B, Halpert, J.R.
Deposit date:2016-12-30
Release date:2017-04-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Halogen-pi Interactions in the Cytochrome P450 Active Site: Structural Insights into Human CYP2B6 Substrate Selectivity.
ACS Chem. Biol., 12, 2017
8CT4
DownloadVisualize
BU of 8ct4 by Molmil
Cryo-EM structure of Mtb Lpd bound to inhibitor complex with 2-((2-cyano-N,5-dimethyl-1H-indole)-7-sulfonamido)-N-(4-(oxetan-3-yl)-3,4-dihydro-2H-benzo[b] [1,4]oxazin-7-yl)acetamide
Descriptor: Dihydrolipoyl dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, N~2~-(2-cyano-5-methyl-1H-indole-7-sulfonyl)-N~2~-methyl-N-[4-(oxetan-3-yl)-3,4-dihydro-2H-1,4-benzoxazin-7-yl]glycinamide
Authors:Kochanczyk, T, Arango, N, Lima, C.D.
Deposit date:2022-05-13
Release date:2022-05-25
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.17 Å)
Cite:Cryo-EM structure of Mtb Lpd bound to the inhibitor 2-((2-cyano-N,5-dimethyl-1H-indole)-7-sulfonamido)-N-(4-(oxetan-3-yl)-3,4-dihydro-2H-benzo[b] [1,4]oxazin-7-yl)acetamide at 2.17 Angstrom resolution
Not published
5TX7
DownloadVisualize
BU of 5tx7 by Molmil
Crystal structure of D-isomer specific 2-hydroxyacid dehydrogenase from Desulfovibrio vulgaris
Descriptor: D-isomer specific 2-hydroxyacid dehydrogenase family protein, DI(HYDROXYETHYL)ETHER, TRIETHYLENE GLYCOL
Authors:Czub, M.P, Shabalin, I.G, Gasiorowska, O.A, Handing, K.B, Kutner, J, Cymborowski, M.T, Hennig, P.M, Bonanno, J, Almo, S.C, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2016-11-15
Release date:2016-12-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Crystal structure of D-isomer specific 2-hydroxyacid dehydrogenase from Desulfovibrio vulgaris
to be published
6V76
DownloadVisualize
BU of 6v76 by Molmil
Crystal Structure of Human PKM2 in Complex with L-valine
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, CHLORIDE ION, GLYCEROL, ...
Authors:Nandi, S, Dey, M.
Deposit date:2019-12-07
Release date:2020-03-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Biochemical and structural insights into how amino acids regulate pyruvate kinase muscle isoform 2.
J.Biol.Chem., 295, 2020
5UAP
DownloadVisualize
BU of 5uap by Molmil
Crystal Structure of CYP2B6 (Y226H/K262R) in complex with Bornyl Bromide
Descriptor: (1R,2R,4R)-2-bromo-1,7,7-trimethylbicyclo[2.2.1]heptane, 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE, Cytochrome P450 2B6, ...
Authors:Shah, M.B, Halpert, J.R.
Deposit date:2016-12-19
Release date:2017-04-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Halogen-pi Interactions in the Cytochrome P450 Active Site: Structural Insights into Human CYP2B6 Substrate Selectivity.
ACS Chem. Biol., 12, 2017
5FRH
DownloadVisualize
BU of 5frh by Molmil
Solution structure of oxidised RsrA
Descriptor: ANTI-SIGMA FACTOR RSRA
Authors:Zdanowski, K, Pecqueur, L, Werner, J, Potts, J.R, Kleanthous, C.
Deposit date:2015-12-17
Release date:2016-08-03
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The Anti-Sigma Factor Rsra Responds to Oxidative Stress by Reburying its Hydrophobic Core.
Nat.Commun., 7, 2016
5IOI
DownloadVisualize
BU of 5ioi by Molmil
X-RAY STRUCTURE OF THE N-TERMINAL DOMAIN OF HUMAN DOUBLECORTIN
Descriptor: Neuronal migration protein doublecortin
Authors:Ruf, A, Benz, J, Burger, D, D'Arcy, B, Debulpaep, M, Di Lello, P, Fry, D, Huber, W, Kremer, T, Laeremans, T, Matile, H, Ross, A, Rudolph, M.G, Rufer, A.C, Sharma, A, Steinmetz, M.O, Steyaert, J, Schoch, G, Stihle, M, Thoma, R.
Deposit date:2016-03-08
Release date:2016-03-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structures of the Human Doublecortin C- and N-terminal Domains in Complex with Specific Antibodies.
J.Biol.Chem., 291, 2016
6UYQ
DownloadVisualize
BU of 6uyq by Molmil
Crystal structure of K45-acetylated SUMO1 in complex with PML-SIM
Descriptor: Protein PML, Small ubiquitin-related modifier 1
Authors:Wahba, H.M, Gagnon, C, Mascle, X.H, Lussier-Price, M, Cappadocia, L, Sakaguchi, K, Omichinski, J.G.
Deposit date:2019-11-14
Release date:2019-11-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.501 Å)
Cite:Acetylation of SUMO1 Alters Interactions with the SIMs of PML and Daxx in a Protein-Specific Manner.
Structure, 28, 2020
6UYR
DownloadVisualize
BU of 6uyr by Molmil
Crystal structure of K46-acetylated SUMO1 in complex with PML-SIM
Descriptor: Protein PML, Small ubiquitin-related modifier 1
Authors:Wahba, H.M, Gagnon, C, Mascle, X.H, Lussier-Price, M, Cappadocia, L, Sakaguchi, K, Omichinski, J.G.
Deposit date:2019-11-14
Release date:2019-11-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Acetylation of SUMO1 Alters Interactions with the SIMs of PML and Daxx in a Protein-Specific Manner.
Structure, 28, 2020
6UYY
DownloadVisualize
BU of 6uyy by Molmil
Crystal structure of K39-acetylated SUMO1 in complex with phosphorylated DAXX
Descriptor: Small ubiquitin-related modifier 1, phosphorylated DAXX
Authors:Wahba, H.M, Gagnon, C, Mascle, X.H, Lussier-Price, M, Cappadocia, L, Sakaguchi, K, Omichinski, J.G.
Deposit date:2019-11-14
Release date:2019-11-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Acetylation of SUMO1 Alters Interactions with the SIMs of PML and Daxx in a Protein-Specific Manner.
Structure, 28, 2020
1C24
DownloadVisualize
BU of 1c24 by Molmil
E. COLI METHIONINE AMINOPEPTIDASE: METHIONINE PHOSPHINATE COMPLEX
Descriptor: (1-AMINO-3-METHYLSULFANYL-PROPYL)-PHOSPHINIC ACID, COBALT (II) ION, METHIONINE AMINOPEPTIDASE, ...
Authors:Lowther, W.T, Zhang, Y, Sampson, P.B, Honek, J.F, Matthews, B.W.
Deposit date:1999-07-22
Release date:1999-11-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Insights into the mechanism of Escherichia coli methionine aminopeptidase from the structural analysis of reaction products and phosphorus-based transition-state analogues.
Biochemistry, 38, 1999
5IWB
DownloadVisualize
BU of 5iwb by Molmil
Crystal structure of design pentatricopeptide repeat complex with MORF protein
Descriptor: Multiple organellar RNA editing factor 9, chloroplastic, PLS3-PPR
Authors:Yan, J, Zhang, Q, Guan, Z, Zou, T, Yin, P.
Deposit date:2016-03-22
Release date:2017-03-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.764 Å)
Cite:Structural basis for designer pentatricopeptide repeat proteins interaction with MORF protein
To be published
8DD3
DownloadVisualize
BU of 8dd3 by Molmil
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus DMCM
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GAMMA-AMINO-BUTANOIC ACID, ...
Authors:Zhu, S, Hibbs, R.E.
Deposit date:2022-06-17
Release date:2022-08-17
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural and dynamic mechanisms of GABA A receptor modulators with opposing activities.
Nat Commun, 13, 2022
8DD2
DownloadVisualize
BU of 8dd2 by Molmil
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus Zolpidem
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GAMMA-AMINO-BUTANOIC ACID, ...
Authors:Zhu, S, Hibbs, R.E.
Deposit date:2022-06-17
Release date:2022-08-17
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural and dynamic mechanisms of GABA A receptor modulators with opposing activities.
Nat Commun, 13, 2022
8DAW
DownloadVisualize
BU of 8daw by Molmil
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to three ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 2 (uD)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ...
Authors:Lee, H.G, Lima, C.D.
Deposit date:2022-06-14
Release date:2022-11-30
Last modified:2023-01-11
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex.
Proc.Natl.Acad.Sci.USA, 120, 2023
8DAU
DownloadVisualize
BU of 8dau by Molmil
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two folded ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 1 (uA)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ...
Authors:Lee, H.G, Lima, C.D.
Deposit date:2022-06-14
Release date:2022-11-30
Last modified:2023-01-11
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex.
Proc.Natl.Acad.Sci.USA, 120, 2023
8DAR
DownloadVisualize
BU of 8dar by Molmil
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex unbound but in the presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ...
Authors:Lee, H.G, Lima, C.D.
Deposit date:2022-06-14
Release date:2022-11-30
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3 Å)
Cite:SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex.
Proc.Natl.Acad.Sci.USA, 120, 2023

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon