PDB: 46169 resultsInfo pagesStatus searchChemie searchBIRD

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5T1J	Crystal Structure of the Tbox DNA binding domain of the transcription factor T-bet Descriptor: DNA, T-box transcription factor TBX21 Authors: Liu, C.F, Brandt, G.S, Hoang, Q, Hwang, E.S, Naumova, N, Lazarevic, V, Dekker, J, Glimcher, L.H, Ringe, D, Petsko, G.A. Deposit date: 2016-08-19 Release date: 2016-10-26 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.947 Å) Cite: Crystal structure of the DNA binding domain of the transcription factor T-bet suggests simultaneous recognition of distant genome sites. Proc.Natl.Acad.Sci.USA, 113, 2016
2PUC	CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICES Descriptor: DNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3'), GUANINE, PROTEIN (PURINE REPRESSOR) Authors: Schumacher, M.A, Choi, K.Y, Zalkin, H, Brennan, R.G. Deposit date: 1997-10-04 Release date: 1998-05-06 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structure of LacI member, PurR, bound to DNA: minor groove binding by alpha helices. Science, 266, 1994
8Z2N	Crystal structure of 5-phosphomethyl-2'-deoxyuridine (5-PmdU) glycinyltransferase gp46/PUGT from Pseudomonads phage PaMx11 in complex with dsDNA Descriptor: CALCIUM ION, DNA (5'-D(*TP*AP*GP*TP*CP*GP*AP*CP*GP*AP*CP*TP*A)-3'), DNA (5'-D(*TP*AP*GP*TP*CP*GP*TP*CP*GP*AP*CP*TP*A)-3'), ... Authors: Wen, Y, Guo, W.T, Wu, B.X. Deposit date: 2024-04-13 Release date: 2024-10-02 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural insights into the biosynthetic mechanism of N alpha-GlyT and 5-NmdU hypermodifications of DNA. Nucleic Acids Res., 2024
142D	SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE AND TORSION ANGLE RESTRAINTS DERIVED FROM TWO-DIMENSIONAL NMR SPECTRA Descriptor: DNA (5'-D(*AP*GP*CP*TP*TP*GP*CP*CP*TP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*TP*CP*AP*AP*GP*GP*CP*AP*AP*GP*CP*T)-3') Authors: Mujeeb, A, James, T.L. Deposit date: 1993-09-24 Release date: 1994-04-30 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra. Biochemistry, 32, 1993
1XBR	T DOMAIN FROM XENOPUS LAEVIS BOUND TO DNA Descriptor: DNA (5'-D(*AP*AP*TP*TP*TP*CP*AP*CP*AP*CP*CP*TP*AP*GP*GP*TP*G P*TP*GP*AP*AP*AP* TP*T)-3'), PROTEIN (T PROTEIN) Authors: Muller, C.W. Deposit date: 1997-07-16 Release date: 1998-01-16 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystallographic structure of the T domain-DNA complex of the Brachyury transcription factor. Nature, 389, 1997
4RVE	THE CRYSTAL STRUCTURE OF ECORV ENDONUCLEASE AND OF ITS COMPLEXES WITH COGNATE AND NON-COGNATE DNA SEGMENTS Descriptor: DNA (5'-D(*GP*GP*GP*AP*TP*AP*TP*CP*CP*C)-3'), PROTEIN (ECO RV (E.C.3.1.21.4)) Authors: Winkler, F.K, Banner, D.W, Oefner, C, Tsernoglou, D, Brown, R.S, Heathman, S.P, Bryan, R.K, Martin, P.D, Petratos, K, Wilso, K.S. Deposit date: 1993-02-18 Release date: 1993-04-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3 Å) Cite: The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments. EMBO J., 12, 1993
1BDZ	NMR STRUCTURE OF A 14 MER EXTENDED C-MYB COGNATE DNA SEQUENCE 5'D(APCPAPAP CPTPGPCP APGPTPTP GPT)3', MINIMIZED AVERAGE STRUCTURE Descriptor: DNA (5'-D(*AP*CP*AP*AP*CP*TP*GP*CP*AP*GP*TP*TP*GP*T)-3') Authors: Radha, P.K, Patel, P.K, Hosur, R.V. Deposit date: 1998-05-12 Release date: 1998-12-02 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: NMR structure of the extended Myb cognate sequence and modeling studies on specific DNA-Myb complexes. Biochemistry, 37, 1998
1VKX	CRYSTAL STRUCTURE OF THE NFKB P50/P65 HETERODIMER COMPLEXED TO THE IMMUNOGLOBULIN KB DNA Descriptor: DNA (5'-D(*AP*GP*GP*AP*AP*AP*GP*TP*CP*CP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*GP*GP*AP*CP*TP*TP*TP*CP*C)-3'), PROTEIN (NF-KAPPA B P50 SUBUNIT), ... Authors: Chen, F, Huang, D.B, Ghosh, G. Deposit date: 1997-09-17 Release date: 1998-12-09 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal structure of p50/p65 heterodimer of transcription factor NF-kappaB bound to DNA. Nature, 391, 1998
1C32	SOLUTION STRUCTURE OF A QUADRUPLEX FORMING DNA AND ITS INTERMIDIATE Descriptor: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3') Authors: Bolton, P.H, Marathias, V.M, Wang, K. Deposit date: 1999-07-24 Release date: 1999-08-18 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structures of the potassium-saturated, 2:1, and intermediate, 1:1, forms of a quadruplex DNA. Nucleic Acids Res., 28, 2000
1C34	SOLUTION STRUCTURE OF A QUADRUPLEX FORMING DNA AND ITS INTERMIDIATE Descriptor: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3') Authors: Bolton, P.H, Marathias, V.M, Wang, K. Deposit date: 1999-07-24 Release date: 1999-08-18 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structures of the potassium-saturated, 2:1, and intermediate, 1:1, forms of a quadruplex DNA. Nucleic Acids Res., 28, 2000
3JRF	Crystal structure of Fis bound to 27 bp DNA F27 containing a C/G at center Descriptor: DNA (27-MER), DNA-binding protein fis Authors: Stella, S, Cascio, D, Johnson, R.C. Deposit date: 2009-09-08 Release date: 2010-04-28 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.05 Å) Cite: The shape of the DNA minor groove directs binding by the DNA-bending protein Fis. Genes Dev., 24, 2010
3JRD	Crystal structure of Fis bound to 27 bp DNA F25 containing T2A3 sequence at center Descriptor: DNA (27-MER), DNA-binding protein fis Authors: Stella, S, Cascio, D, Johnson, R.C. Deposit date: 2009-09-08 Release date: 2010-04-28 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.1 Å) Cite: The shape of the DNA minor groove directs binding by the DNA-bending protein Fis. Genes Dev., 24, 2010
6LAE	Crystal structure of the DNA-binding domain of human XPA in complex with DNA Descriptor: DNA (5'-D(P*GP*CP*AP*TP*CP*TP*CP*GP*CP*CP*T)-3'), DNA (5'-D(P*TP*GP*GP*CP*GP*AP*GP*AP*TP*GP*C)-3'), DNA repair protein complementing XP-A cells, ... Authors: Lian, F.M, Yang, X, Jiang, Y.L, Yang, F, Li, C, Yang, W, Qian, C. Deposit date: 2019-11-12 Release date: 2020-02-26 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.81 Å) Cite: New structural insights into the recognition of undamaged splayed-arm DNA with a single pair of non-complementary nucleotides by human nucleotide excision repair protein XPA. Int.J.Biol.Macromol., 148, 2020
140D	SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE AND TORSION ANGLE RESTRAINTS DERIVED FROM TWO-DIMENSIONAL NMR SPECTRA Descriptor: DNA (5'-D(*AP*GP*CP*TP*TP*GP*CP*CP*TP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*TP*CP*AP*AP*GP*GP*CP*AP*AP*GP*CP*T)-3') Authors: Mujeeb, A, Kerwin, S.M, Kenyon, G.L, James, T.L. Deposit date: 1993-09-24 Release date: 1994-04-30 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra. Biochemistry, 32, 1993
141D	SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE AND TORSION ANGLE RESTRAINTS DERIVED FROM TWO-DIMENSIONAL NMR SPECTRA Descriptor: DNA (5'-D(*AP*GP*CP*TP*TP*GP*CP*CP*TP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*TP*CP*AP*AP*GP*GP*CP*AP*AP*GP*CP*T)-3') Authors: Mujeeb, A, James, T.L. Deposit date: 1993-09-24 Release date: 1994-04-30 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra. Biochemistry, 32, 1993
5KIF	Structural impact of single ribonucleotides in DNA Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*AP*T)-3'), DNA/RNA (5'-D(*AP*TP*CP*C)-R(P*G)-D(P*GP*TP*AP*G)-3') Authors: Evich, M, Spring-Connell, A.M, Storici, F, Germann, M.W. Deposit date: 2016-06-16 Release date: 2016-08-24 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural Impact of Single Ribonucleotide Residues in DNA. Chembiochem, 17, 2016
117D	CRYSTAL AND MOLECULAR STRUCTURE OF THE ALTERNATING DODECAMER D(GCGTACGTACGC) IN THE A-DNA FORM: COMPARISON WITH THE ISOMORPHOUS NON-ALTERNATING DODECAMER D(CCGTACGTACGG) Descriptor: DNA (5'-D(*GP*CP*GP*TP*AP*CP*GP*TP*AP*CP*GP*C)-3') Authors: Bingman, C.A, Jain, S, Zon, G, Sundaralingam, M. Deposit date: 1993-02-10 Release date: 1993-04-15 Last modified: 2023-03-22 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Crystal and molecular structure of the alternating dodecamer d(GCGTACGTACGC) in the A-DNA form: comparison with the isomorphous non-alternating dodecamer d(CCGTACGTACGG). Nucleic Acids Res., 20, 1992
124D	STRUCTURE OF A DNA:RNA HYBRID DUPLEX: WHY RNASE H DOES NOT CLEAVE PURE RNA Descriptor: DNA (5'-D(*GP*TP*CP*AP*CP*AP*TP*G)-3'), RNA (5'-R(*CP*AP*UP*GP*UP*GP*AP*C)-3') Authors: Fedoroff, O.Y, Salazar, M, Reid, B.R. Deposit date: 1993-05-07 Release date: 1993-10-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure of a DNA:RNA Hybrid Duplex. Why Rnase H Does not Cleave Pure RNA J.Mol.Biol., 233, 1993
5KGV	Structural impact of single ribonucleotides in DNA Descriptor: DNA (5'-D(*GP*AP*GP*CP*TP*CP*CP*AP*T)-3'), DNA/RNA (5'-D(*AP*TP*GP*GP*A)-R(P*G)-D(P*CP*TP*C)-3') Authors: Evich, M, Spring-Connell, A.M, Storici, F. Deposit date: 2016-06-13 Release date: 2016-08-24 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural Impact of Single Ribonucleotide Residues in DNA. Chembiochem, 17, 2016
1ANA	HELIX GEOMETRY AND HYDRATION IN AN A-DNA TETRAMER. IC-C-G-G Descriptor: DNA (5'-D(*(C38)P*CP*GP*G)-3') Authors: Conner, B.N, Yoon, C, Dickerson, J.L, Dickerson, R.E. Deposit date: 1982-06-04 Release date: 1982-07-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Helix geometry and hydration in an A-DNA tetramer: IC-C-G-G J.Mol.Biol., 174, 1984
5KI7	Structural impact of single ribonucleotides in DNA Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*AP*T)-3'), DNA/RNA (5'-D(*AP*TP*CP*C)-R(P*G)-D(P*GP*TP*AP*G)-3') Authors: Evich, M, Spring-Connell, A.M, Storici, F, Germann, M.W. Deposit date: 2016-06-16 Release date: 2016-08-24 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural Impact of Single Ribonucleotide Residues in DNA. Chembiochem, 17, 2016
5KIE	Structural impact of single ribonucleotides in DNA Descriptor: DNA (5'-D(*GP*AP*GP*CP*TP*CP*CP*AP*T)-3'), DNA/RNA (5'-D(*AP*TP*GP*GP*A)-R(P*G)-D(P*CP*TP*C)-3') Authors: Evich, M, Spring-Connell, A.M, Storici, F, Germann, M.W. Deposit date: 2016-06-16 Release date: 2016-08-24 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural Impact of Single Ribonucleotide Residues in DNA. Chembiochem, 17, 2016
5KIH	Structural impact of single ribonucleotides in DNA Descriptor: DNA (5'-D(*CP*AP*GP*GP*CP*CP*TP*AP*A)-3'), DNA/RNA (5'-D(*TP*TP*AP*G)-R(P*G)-D(P*CP*CP*TP*G)-3') Authors: Evich, M, Spring-Connell, A.M, Storici, F, Germann, M.W. Deposit date: 2016-06-16 Release date: 2016-08-24 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural Impact of Single Ribonucleotide Residues in DNA. Chembiochem, 17, 2016
5KIB	Structural impact of single ribonucleotides in DNA Descriptor: DNA (5'-D(*CP*AP*GP*GP*CP*CP*TP*AP*A)-3'), DNA/RNA (5'-D(*TP*TP*AP*G)-R(P*G)-D(P*CP*CP*TP*G)-3') Authors: Evich, M, Spring-Connell, A.M, Storici, F, Germann, M.W. Deposit date: 2016-06-16 Release date: 2016-08-24 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural Impact of Single Ribonucleotide Residues in DNA. Chembiochem, 17, 2016
3DFX	Opposite GATA DNA binding Descriptor: DNA (5'-D(*DAP*DAP*DGP*DGP*DTP*DTP*DAP*DTP*DCP*DTP*DCP*DTP*DGP*DAP*DTP*DTP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DTP*DTP*DGP*DAP*DTP*DAP*DAP*DAP*DTP*DCP*DAP*DGP*DAP*DGP*DAP*DTP*DAP*DAP*DCP*DC)-3'), Trans-acting T-cell-specific transcription factor GATA-3, ... Authors: Bates, D.L, Kim, G.K, Guo, L, Chen, L. Deposit date: 2008-06-12 Release date: 2008-07-29 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structures of multiple GATA zinc fingers bound to DNA reveal new insights into DNA recognition and self-association by GATA. J.Mol.Biol., 381, 2008

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