Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4DQA
DownloadVisualize
BU of 4dqa by Molmil
Crystal structure of a putative carbohydrate binding protein (BACOVA_03559) from Bacteroides ovatus ATCC 8483 at 1.50 A resolution
Descriptor: uncharacterized protein
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2012-02-15
Release date:2012-03-21
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of a hypothetical protein (BACOVA_03559) from Bacteroides ovatus ATCC 8483 at 1.50 A resolution
To be published
3BRF
DownloadVisualize
BU of 3brf by Molmil
CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, C2221
Descriptor: DNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3'), DNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3'), Lin-12 and glp-1 phenotype protein 1, ...
Authors:Wilson, J.J, Kovall, R.A.
Deposit date:2007-12-21
Release date:2008-04-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:RAM-induced Allostery Facilitates Assembly of a Notch Pathway Active Transcription Complex.
J.Biol.Chem., 283, 2008
3C4P
DownloadVisualize
BU of 3c4p by Molmil
Crystal Structure of the SHV-1 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP) E73M complex
Descriptor: Beta-lactamase SHV-1, Beta-lactamase inhibitory protein, SULFATE ION
Authors:Reynolds, K.A, Hanes, M.S, Thomson, J.M, Antczak, A.J, Berger, J.M, Bonomo, R.A, Kirsch, J.F, Handel, T.M.
Deposit date:2008-01-30
Release date:2008-05-27
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Computational redesign of the SHV-1 beta-lactamase/beta-lactamase inhibitor protein interface.
J.Mol.Biol., 382, 2008
4DRJ
DownloadVisualize
BU of 4drj by Molmil
o-crystal structure of the PPIase domain of FKBP52, Rapamycin and the FRB fragment of mTOR
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP4, RAPAMYCIN IMMUNOSUPPRESSANT DRUG, SULFATE ION, ...
Authors:Maerz, A.M, Bracher, A, Hausch, F.
Deposit date:2012-02-17
Release date:2013-02-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Large FK506-Binding Proteins Shape the Pharmacology of Rapamycin.
Mol.Cell.Biol., 33, 2013
4DCQ
DownloadVisualize
BU of 4dcq by Molmil
Crystal Structure of the Fab Fragment of 3B5H10, an Antibody-Specific for Extended Polyglutamine Repeats (orthorhombic form)
Descriptor: 1,2-ETHANEDIOL, 3B5H10 FAB Heavy Chain, 3B5H10 FAB Light Chain
Authors:Peters-Libeu, C.A, Tran, T, Finkbeiner, S, Weisgraber, K.
Deposit date:2012-01-18
Release date:2012-02-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Disease-associated polyglutamine stretches in monomeric huntingtin adopt a compact structure.
J.Mol.Biol., 421, 2012
3BUP
DownloadVisualize
BU of 3bup by Molmil
Golgi alpha-mannosidase II D341N acid-base catalyst mutant with bound mannose
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Alpha-mannosidase 2, ...
Authors:Kuntz, D.A, Rose, D.R.
Deposit date:2008-01-03
Release date:2008-07-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Probing the substrate specificity of Golgi alpha-mannosidase II by use of synthetic oligosaccharides and a catalytic nucleophile mutant.
J.Am.Chem.Soc., 130, 2008
3C8F
DownloadVisualize
BU of 3c8f by Molmil
4Fe-4S-Pyruvate formate-lyase Activating Enzyme with partially disordered AdoMet
Descriptor: IRON/SULFUR CLUSTER, Pyruvate formate-lyase 1-activating enzyme, TRIETHYLENE GLYCOL, ...
Authors:Vey, J.L, Drennan, C.L.
Deposit date:2008-02-11
Release date:2008-10-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural basis for glycyl radical formation by pyruvate formate-lyase activating enzyme.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3C8E
DownloadVisualize
BU of 3c8e by Molmil
Crystal Structure Analysis of yghU from E. Coli
Descriptor: GLUTATHIONE, yghU, glutathione S-transferase homologue
Authors:Harp, J, Ladner, J.E, Schaab, M.R, Stourman, N.V, Armstrong, R.N.
Deposit date:2008-02-11
Release date:2009-02-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure and Function of YghU, a Nu-Class Glutathione Transferase Related to YfcG from Escherichia coli.
Biochemistry, 50, 2011
3CC6
DownloadVisualize
BU of 3cc6 by Molmil
Crystal structure of kinase domain of protein tyrosine kinase 2 beta (PTK2B)
Descriptor: GLYCEROL, MAGNESIUM ION, Protein tyrosine kinase 2 beta
Authors:Busam, R.D, Lehtio, L, Karlberg, T, Arrowsmith, C.H, Bountra, C, Collins, R, Dahlgren, L.G, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Helleday, T, Herman, M.D, Johansson, A, Johansson, I, Kallas, A, Kotenyova, T, Moche, M, Nilsson, M.E, Nordlund, P, Nyman, T, Persson, C, Sagemark, J, Svensson, L, Thorsell, A.G, Tresaugues, L, Van den Berg, S, Weigelt, J, Welin, M, Berglund, H, Structural Genomics Consortium (SGC)
Deposit date:2008-02-25
Release date:2008-03-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of Protein Tyrosine Kinase 2 Beta (PTK2B) Kinase domain.
To be Published
3BN6
DownloadVisualize
BU of 3bn6 by Molmil
Crystal Structure of the C2 Domain of Bovine Lactadherin at 1.67 Angstrom Resolution
Descriptor: Lactadherin
Authors:Shao, C, Novakovic, V.A, Head, J.F, Seaton, B.A, Gilbert, G.E.
Deposit date:2007-12-13
Release date:2007-12-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Crystal structure of lactadherin C2 domain at 1.7A resolution with mutational and computational analyses of its membrane-binding motif.
J.Biol.Chem., 283, 2008
3BNN
DownloadVisualize
BU of 3bnn by Molmil
Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site
Descriptor: A site of human ribosome
Authors:Kondo, J, Westhof, E.
Deposit date:2007-12-14
Release date:2008-06-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:The bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates
Nucleic Acids Res., 36, 2008
3BQA
DownloadVisualize
BU of 3bqa by Molmil
Crystal Structure of an E.coli PhoQ Sensor Domain Mutant
Descriptor: SULFATE ION, Sensor protein phoQ
Authors:Cheung, J, Hendrickson, W.A, Waldburger, C.D.
Deposit date:2007-12-19
Release date:2008-03-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of a Functional Dimer of the PhoQ Sensor Domain.
J.Biol.Chem., 283, 2008
3BPB
DownloadVisualize
BU of 3bpb by Molmil
Crystal structure of the dimethylarginine dimethylaminohydrolase H162G adduct with S-methyl-L-thiocitrulline
Descriptor: N~5~-[(E)-imino(methylsulfanyl)methyl]-L-ornithine, dimethylarginine dimethylaminohydrolase
Authors:Monzingo, A.F, Linsky, T.W, Stone, E.M, Fast, W, Robertus, J.D.
Deposit date:2007-12-18
Release date:2008-06-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Promiscuous partitioning of a covalent intermediate common in the pentein superfamily.
Chem.Biol., 15, 2008
3BU7
DownloadVisualize
BU of 3bu7 by Molmil
Crystal Structure and Biochemical Characterization of GDOsp, a Gentisate 1,2-Dioxygenase from Silicibacter Pomeroyi
Descriptor: FE (II) ION, Gentisate 1,2-dioxygenase
Authors:Chen, J, Wang, M.Z, Zhu, G.Y, Zhang, X.C, Rao, Z.H.
Deposit date:2008-01-02
Release date:2008-08-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure and mutagenic analysis of GDOsp, a gentisate 1,2-dioxygenase from Silicibacter pomeroyi.
Protein Sci., 17, 2008
3BUO
DownloadVisualize
BU of 3buo by Molmil
Crystal structure of c-Cbl-TKB domain complexed with its binding motif in EGF receptor'
Descriptor: 13-meric peptide from Epidermal growth factor receptor, E3 ubiquitin-protein ligase CBL
Authors:Ng, C, Jackson, R.A, Buschdorf, J.P, Sun, Q, Guy, G.R, Sivaraman, J.
Deposit date:2008-01-03
Release date:2008-02-26
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for a novel intrapeptidyl H-bond and reverse binding of c-Cbl-TKB domain substrates
Embo J., 27, 2008
3BVP
DownloadVisualize
BU of 3bvp by Molmil
Crystal Structure of the N-terminal Catalytic Domain of TP901-1 Integrase
Descriptor: TP901-1 Integrase
Authors:Yuan, P, Van Duyne, G.D.
Deposit date:2008-01-07
Release date:2008-08-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Tetrameric structure of a serine integrase catalytic domain.
Structure, 16, 2008
3C09
DownloadVisualize
BU of 3c09 by Molmil
Crystal structure the Fab fragment of matuzumab (Fab72000) in complex with domain III of the extracellular region of EGFR
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Epidermal growth factor receptor, Matuzumab Fab Heavy chain, ...
Authors:Ferguson, K.M, Schmiedel, J, Knoechel, T.
Deposit date:2008-01-18
Release date:2008-04-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Matuzumab binding to EGFR prevents the conformational rearrangement required for dimerization.
Cancer Cell, 13, 2008
4MJF
DownloadVisualize
BU of 4mjf by Molmil
Crystal structure of a DUF4348 family protein (BVU_2238) from Bacteroides vulgatus ATCC 8482 at 1.99 A resolution
Descriptor: 1,2-ETHANEDIOL, 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, CHLORIDE ION, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2013-09-03
Release date:2013-11-13
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Crystal structure of a hypothetical protein (BVU_2238) from Bacteroides vulgatus ATCC 8482 at 1.99 A resolution
To be published
3C3X
DownloadVisualize
BU of 3c3x by Molmil
The multiple phenylpropene synthases in both Clarkia breweri and Petunia hybrida represent two distinct lineages
Descriptor: Eugenol synthase 1, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Louie, G.V, Noel, J.P, Bowman, M.E.
Deposit date:2008-01-29
Release date:2008-05-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The multiple phenylpropene synthases in both Clarkia breweri and Petunia hybrida represent two distinct protein lineages.
Plant J., 54, 2008
3BZ7
DownloadVisualize
BU of 3bz7 by Molmil
Crystal Structures of (S)-(-)-Blebbistatin Analogs bound to Dictyostelium discoideum myosin II
Descriptor: (3aS)-3a-hydroxy-5-methyl-1-phenyl-1,2,3,3a-tetrahydro-4H-pyrrolo[2,3-b]quinolin-4-one, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Allingham, J.S, Rayment, I.
Deposit date:2008-01-17
Release date:2008-02-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:The small molecule tool (S)-(-)-blebbistatin: novel insights of relevance to myosin inhibitor design.
Org.Biomol.Chem., 6, 2008
3C4J
DownloadVisualize
BU of 3c4j by Molmil
ABC protein ArtP in complex with ATP-gamma-S
Descriptor: Amino acid ABC transporter (ArtP), MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Authors:Thaben, P.F, Eckey, V, Scheffel, F, Saenger, W, Schneider, E, Vahedi-Faridi, A.
Deposit date:2008-01-30
Release date:2009-02-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Crystal Structures of the ATP-binding cassette (ABC) Protein ArtP from Geobacillus stearothermophilus in complexes with nucleotides and nucleotide analogs reveal an intermediate semiclosed dimer in the post hydrolyses state and an asymmetry in the dimerisation region
To be Published
3C5C
DownloadVisualize
BU of 3c5c by Molmil
Crystal structure of human Ras-like, family 12 protein in complex with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, RAS-like protein 12, ...
Authors:Shen, L, Tong, Y, Tempel, W, Loppnau, P, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2008-01-31
Release date:2008-02-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of human Ras-like, family 12 protein in complex with GDP.
To be Published
4DY4
DownloadVisualize
BU of 4dy4 by Molmil
High resolution structure of E.coli WrbA with FMN
Descriptor: DI(HYDROXYETHYL)ETHER, FLAVIN MONONUCLEOTIDE, Flavoprotein wrbA
Authors:Kishko, I, Brynda, J, Kuta Smatanova, I, Ettrich, R, Carey, J.
Deposit date:2012-02-28
Release date:2013-03-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:High resolution structure of E.coli WrbA with FMN
To be Published
4E0W
DownloadVisualize
BU of 4e0w by Molmil
Crystal structure of the kainate receptor GluK3 ligand binding domain in complex with kainate
Descriptor: 3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE, CHLORIDE ION, Glutamate receptor, ...
Authors:Venskutonyte, R, Frydenvang, K, Kastrup, J.S.
Deposit date:2012-03-05
Release date:2012-05-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3501 Å)
Cite:Kainate induces various domain closures in AMPA and kainate receptors.
Neurochem Int, 61, 2012
4DX0
DownloadVisualize
BU of 4dx0 by Molmil
Structure of the 14-3-3/PMA2 complex stabilized by a pyrazole derivative
Descriptor: 14-3-3-like protein E, 4-[(4R)-4-(4-nitrophenyl)-6-oxidanylidene-3-phenyl-1,4-dihydropyrrolo[3,4-c]pyrazol-5-yl]benzoic acid, N.plumbaginifolia H+-translocating ATPase mRNA
Authors:Richter, A, Rose, R, Hedberg, C, Waldmann, H, Ottmann, C.
Deposit date:2012-02-27
Release date:2012-05-30
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:An Optimised Small-Molecule Stabiliser of the 14-3-3-PMA2 Protein-Protein Interaction.
Chemistry, 18, 2012

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon