Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8Z83
DownloadVisualize
BU of 8z83 by Molmil
Photosynthetic LH1-RC complex from the purple bacterium Halorhodospira halophila
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (2S)-3-hydroxypropane-1,2-diyl dihexadecanoate, Antenna complex, ...
Authors:Tani, K, Kanno, R, Nagashima, K.V.P, Hiwatashi, N, Kawakami, M, Nakata, K, Nagashima, S, Inoue, K, Takaichi, S, Purba, E.R, Hall, M, Yu, L.-J, Madigan, M.T, Mizoguchi, A, Humbel, B.M, Kimura, Y, Wang-Otomo, Z.-Y.
Deposit date:2024-04-21
Release date:2025-01-29
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:A Native LH1-RC-HiPIP Supercomplex from an Extremophilic Phototroph.
Commun Biol, 8, 2025
9EIO
DownloadVisualize
BU of 9eio by Molmil
Cryo-EM structure of the mutant KCa2.2_F244S channel
Descriptor: CALCIUM ION, Calmodulin-1, POTASSIUM ION, ...
Authors:Nam, Y.W, Zhang, M.
Deposit date:2024-11-26
Release date:2025-04-23
Last modified:2025-05-07
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Cryo-EM structures of the small-conductance Ca 2+ -activated K Ca 2.2 channel.
Nat Commun, 16, 2025
9CP3
DownloadVisualize
BU of 9cp3 by Molmil
Post-targeting aCascade Type IA CRISPR-Cas Surveillance Complexes
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CRISPR system aCascade subunit Cas5 1, CRISPR-associated aCascade subunit Cas7/Csa2 2, ...
Authors:Findlay, J.L, Gentry, J.K, Lawrence, C.M.
Deposit date:2024-07-17
Release date:2025-07-23
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:Post-targeting aCascade Type IA CRISPR_Cas Surveillance Complexes
To Be Published
9CP2
DownloadVisualize
BU of 9cp2 by Molmil
Post-targeting aCASCADE Type IA CRISPR_Cas Surveillance Complexes
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CRISPR system aCascade subunit Cas5 1, CRISPR-associated aCascade subunit Cas7/Csa2 2, ...
Authors:Gentry, J.K, Findlay, J.L, Lawrence, C.M.
Deposit date:2024-07-17
Release date:2025-07-23
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:Structures and Disassembly of Post-Targeting Type I-A CRISPR_Cas Surveillance Complexes
To Be Published
5NIM
DownloadVisualize
BU of 5nim by Molmil
EthR complex
Descriptor: HTH-type transcriptional regulator EthR, SULFATE ION, [1-(2-hydroxyethyl)pyrrolo[3,4-c]pyrazol-5-yl]-(5-propyl-1,2-oxazol-3-yl)methanone
Authors:Pohl, E, Tatum, N.J, Cole, J.C, Baulard, A.R.
Deposit date:2017-03-24
Release date:2017-11-15
Last modified:2025-10-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:New active leads for tuberculosis booster drugs by structure-based drug discovery.
Org. Biomol. Chem., 15, 2017
9CP1
DownloadVisualize
BU of 9cp1 by Molmil
Post-targeting aCascade Type I-A CRISPR-Cas Surveillance Complexes
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CRISPR system aCascade subunit Cas5 1, CRISPR-associated aCascade subunit Cas7/Csa2 2, ...
Authors:Gentry, J.K, Findlay, J.L, Lawrence, C.M.
Deposit date:2024-07-17
Release date:2025-07-23
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Structures and Disassembly of Post-Targeting Type I-A CRISPR-Cas Surveillance Complexes
To Be Published
5NJ0
DownloadVisualize
BU of 5nj0 by Molmil
EthR complex
Descriptor: HTH-type transcriptional regulator EthR, SULFATE ION, ~{N}-[(2~{R})-2-(4-nitrophenyl)-2-oxidanyl-ethyl]-1,3-benzodioxole-5-carboxamide
Authors:Pohl, E, Tatum, N.J, Cole, J.C, Baulard, A.R.
Deposit date:2017-03-27
Release date:2017-11-15
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:New active leads for tuberculosis booster drugs by structure-based drug discovery.
Org. Biomol. Chem., 15, 2017
5NJ9
DownloadVisualize
BU of 5nj9 by Molmil
E. coli Microcin-processing metalloprotease TldD/E with DRVY angiotensin fragment bound
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ASP-ARG-VAL-TYR, ...
Authors:Ghilarov, D, Serebryakova, M, Stevenson, C.E.M, Hearnshaw, S.J, Volkov, D, Maxwell, A, Lawson, D.M, Severinov, K.
Deposit date:2017-03-28
Release date:2017-10-04
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:The Origins of Specificity in the Microcin-Processing Protease TldD/E.
Structure, 25, 2017
5HPO
DownloadVisualize
BU of 5hpo by Molmil
Cycloalternan-forming enzyme from Listeria monocytogenes in complex with maltopentaose
Descriptor: CALCIUM ION, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Halavaty, A.S, Light, S.H, Minasov, G, Winsor, J, Grimshaw, S, Shuvalova, L, Peterson, S, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-01-20
Release date:2017-01-25
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Transferase Versus Hydrolase: The Role of Conformational Flexibility in Reaction Specificity.
Structure, 25, 2017
7SX5
DownloadVisualize
BU of 7sx5 by Molmil
Crystal structure of ligase I with nick duplexes containing mismatch A:C
Descriptor: ADENOSINE MONOPHOSPHATE, DNA chain 1, DNA chain 2, ...
Authors:Tang, Q, Gulkis, M, McKenna, R, Caglayan, M.
Deposit date:2021-11-22
Release date:2022-07-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structures of LIG1 that engage with mutagenic mismatches inserted by pol beta in base excision repair.
Nat Commun, 13, 2022
7X8R
DownloadVisualize
BU of 7x8r by Molmil
Cryo-EM structure of the Boc5-bound hGLP-1R-Gs complex
Descriptor: 2,4-bis(3-methoxy-4-thiophen-2-ylcarbonyloxy-phenyl)-1,3-bis[[4-[(2-methylpropan-2-yl)oxycarbonylamino]phenyl]carbonylamino]cyclobutane-1,3-dicarboxylic acid, Glucagon-like peptide 1 receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Cong, Z.T, Zhou, Q.T, Li, Y, Chen, L.N, Zhang, Z.C, Liang, A.Y, Liu, Q, Wu, X.Y, Dai, A.T, Xia, T, Wu, W, Zhang, Y, Yang, D.H, Wang, M.W.
Deposit date:2022-03-14
Release date:2022-06-29
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (2.61 Å)
Cite:Structural basis of peptidomimetic agonism revealed by small- molecule GLP-1R agonists Boc5 and WB4-24.
Proc.Natl.Acad.Sci.USA, 119, 2022
7SUM
DownloadVisualize
BU of 7sum by Molmil
Crystal structure of human ligase I with nick duplexes containing cognate A:T
Descriptor: ADENOSINE MONOPHOSPHATE, DNA ligase 1, DNA(5'-*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*A-3'), ...
Authors:Tang, Q, Gulkis, M, McKenna, R, Caglayan, M.
Deposit date:2021-11-17
Release date:2022-07-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structures of LIG1 that engage with mutagenic mismatches inserted by pol beta in base excision repair.
Nat Commun, 13, 2022
9FZB
DownloadVisualize
BU of 9fzb by Molmil
Human p53 DNA-binding domain bound to DARPin C10-H82R
Descriptor: 1,2-ETHANEDIOL, Cellular tumor antigen p53, DARPin C10-H82R, ...
Authors:Yuksel, B, Balourdas, D.I, Muenick, P, Knapp, S, Doetsch, V, Joerger, A.C, Structural Genomics Consortium (SGC)
Deposit date:2024-07-05
Release date:2025-04-02
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:DARPin-induced reactivation of p53 in HPV-positive cells.
Nat.Struct.Mol.Biol., 32, 2025
7SXN
DownloadVisualize
BU of 7sxn by Molmil
Orb2A residues 1-9 MYNKFVNFI
Descriptor: Orb2A residues 1-9 MYNKFVNFI
Authors:Bowler, J.T, Sawaya, M.R, Boyer, D.R, Cascio, D, Eisenberg, D.S.
Deposit date:2021-11-23
Release date:2022-10-05
Last modified:2024-05-22
Method:ELECTRON CRYSTALLOGRAPHY (1.05 Å)
Cite:Micro-electron diffraction structure of the aggregation-driving N terminus of Drosophila neuronal protein Orb2A reveals amyloid-like beta-sheets.
J.Biol.Chem., 298, 2022
9GGW
DownloadVisualize
BU of 9ggw by Molmil
Human KRas4A (GDP) in complex with compound 16
Descriptor: 1,2-ETHANEDIOL, 11-(4-aminocyclohexyl)-16-chloro-1,15-dihydroxy-10,10-dioxo-10lambda6-thia-2,11lambda6-diaza-1lambda6,15lambda6-diphospha-3-phosphoniapentacyclo[7.5.1.01,15.03,15.013,15]hexadecan-12-one, GTPase KRas, ...
Authors:Schuettelkopf, A.W.
Deposit date:2024-08-14
Release date:2025-04-16
Last modified:2025-05-21
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Reversible Small Molecule Multivariant Ras Inhibitors Display Tunable Affinity for the Active and Inactive Forms of Ras.
J.Med.Chem., 68, 2025
8TJ9
DownloadVisualize
BU of 8tj9 by Molmil
CRYSTAL STRUCTURE OF THE A/Michigan/15/2014(H3N2) INFLUENZA VIRUS HEMAGGLUTININ WITH HUMAN RECEPTOR ANALOG 6'-SLNLN
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ...
Authors:Wu, N.C, Zhu, X, Wilson, I.A.
Deposit date:2023-07-20
Release date:2024-02-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Evolution of human H3N2 influenza virus receptor specificity has substantially expanded the receptor-binding domain site.
Cell Host Microbe, 32, 2024
6S05
DownloadVisualize
BU of 6s05 by Molmil
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Descriptor: 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ...
Authors:Kargas, V, Warren, A.J.
Deposit date:2019-06-13
Release date:2019-06-26
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Mechanism of completion of peptidyltransferase centre assembly in eukaryotes.
Elife, 8, 2019
7T13
DownloadVisualize
BU of 7t13 by Molmil
Hexameric HIV-1 (M-group) CA Q50Y mutant
Descriptor: Capsid protein p24
Authors:Jacques, D.A, James, L.C.
Deposit date:2021-12-01
Release date:2022-10-19
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Evasion of cGAS and TRIM5 defines pandemic HIV.
Nat Microbiol, 7, 2022
9GGM
DownloadVisualize
BU of 9ggm by Molmil
Cryo-EM structure of KBTBD4 P313PRR mutant-HDAC2 2:2 complex
Descriptor: Histone deacetylase 2, Isoform 1 of Kelch repeat and BTB domain-containing protein 4, ZINC ION
Authors:Chen, Z, Chi, G, Pike, A.C.W, Montes, B, Bullock, A.N.
Deposit date:2024-08-13
Release date:2025-04-09
Method:ELECTRON MICROSCOPY (2.71 Å)
Cite:Structural mimicry of UM171 and neomorphic cancer mutants co-opts E3 ligase KBTBD4 for HDAC1/2 recruitment.
Nat Commun, 16, 2025
7X8S
DownloadVisualize
BU of 7x8s by Molmil
Cryo-EM structure of the WB4-24-bound hGLP-1R-Gs complex
Descriptor: 2,4-bis(3-methoxy-4-thiophen-2-ylcarbonyloxy-phenyl)-1,3-bis[[4-(2-methylpropanoylamino)phenyl]carbonylamino]cyclobutane-1,3-dicarboxylic acid, Glucagon-like peptide 1 receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Cong, Z.T, Zhou, Q.T, Li, Y, Chen, L.N, Zhang, Z.C, Liang, A.Y, Liu, Q, Wu, X.Y, Dai, A.T, Xia, T, Wu, W, Zhang, Y, Yang, D.H, Wang, M.W.
Deposit date:2022-03-14
Release date:2022-06-29
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Structural basis of peptidomimetic agonism revealed by small- molecule GLP-1R agonists Boc5 and WB4-24.
Proc.Natl.Acad.Sci.USA, 119, 2022
8U4A
DownloadVisualize
BU of 8u4a by Molmil
Crystal Structure of BlCel9A from Glycoside Hydrolase Family 9 in Complex with Cellotriose
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Araujo, E.A, Polikarpov, I.
Deposit date:2023-09-10
Release date:2024-02-14
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Molecular mechanism of cellulose depolymerization by the two-domain BlCel9A enzyme from the glycoside hydrolase family 9.
Carbohydr Polym, 329, 2024
8OVT
DownloadVisualize
BU of 8ovt by Molmil
Crystal structure of the ligand-free YeGT glycosyltransferase
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, YeGT glycosyltransferase
Authors:Wirth, C, Hunte, C.
Deposit date:2023-04-26
Release date:2024-05-15
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Tyrosine-modifying glycosylation by Yersinia effectors.
J.Biol.Chem., 300, 2024
8U4F
DownloadVisualize
BU of 8u4f by Molmil
Crystal Structure of BlCel9A from Glycoside Hydrolase Family 9 in Complex with Cellohexaose
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Araujo, E.A, Polikarpov, I.
Deposit date:2023-09-10
Release date:2024-02-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Molecular mechanism of cellulose depolymerization by the two-domain BlCel9A enzyme from the glycoside hydrolase family 9.
Carbohydr Polym, 329, 2024
5K6Y
DownloadVisualize
BU of 5k6y by Molmil
Sidekick-2 immunoglobulin domains 1-4, crystal form 2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Protein sidekick-2
Authors:Goodman, K.M, Mannepalli, S, Honig, B, Shapiro, L.
Deposit date:2016-05-25
Release date:2016-09-28
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Molecular basis of sidekick-mediated cell-cell adhesion and specificity.
Elife, 5, 2016
8FZR
DownloadVisualize
BU of 8fzr by Molmil
CryoEM structure of yeast Arginyltransferase 1 (ATE1)
Descriptor: Arg tRNA, Arginyl-tRNA--protein transferase 1, ZINC ION
Authors:Huang, W, Zhang, Y, Taylor, D.J.
Deposit date:2023-01-29
Release date:2023-04-26
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:The structural basis of tRNA recognition by arginyl-tRNA-protein transferase.
Nat Commun, 14, 2023

245011

PDB entries from 2025-11-19

PDB statisticsPDBj update infoContact PDBjnumon