Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8BVX
DownloadVisualize
BU of 8bvx by Molmil
Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH13264
Descriptor: 1,2-ETHANEDIOL, N-glycosylase/DNA lyase, NICKEL (II) ION, ...
Authors:Scaletti, E, Stenmark, P.
Deposit date:2022-12-05
Release date:2024-05-15
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH13264
To Be Published
3EHM
DownloadVisualize
BU of 3ehm by Molmil
Structure of BT1043
Descriptor: 1,2-ETHANEDIOL, SusD homolog
Authors:Koropatkin, N.M, Smith, T.J.
Deposit date:2008-09-13
Release date:2009-05-12
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a SusD homologue, BT1043, involved in mucin O-glycan utilization in a prominent human gut symbiont.
Biochemistry, 48, 2009
6I9Q
DownloadVisualize
BU of 6i9q by Molmil
Structure of the mouse CD98 heavy chain ectodomain
Descriptor: 1,2-ETHANEDIOL, 4F2 cell-surface antigen heavy chain, CHLORIDE ION
Authors:Schiefner, A, Deuschle, F.-C, Skerra, A.
Deposit date:2018-11-24
Release date:2019-04-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural differences between the ectodomains of murine and human CD98hc.
Proteins, 87, 2019
7VNO
DownloadVisualize
BU of 7vno by Molmil
Structure of aminotransferase
Descriptor: 1,2-ETHANEDIOL, 454aa long hypothetical 4-aminobutyrate aminotransferase, GLYCEROL, ...
Authors:Sakuraba, H, Ohshida, T, Ohshima, T.
Deposit date:2021-10-11
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a novel type of ornithine delta-aminotransferase from the hyperthermophilic archaeon Pyrococcus horikoshii.
Int.J.Biol.Macromol., 208, 2022
5BOE
DownloadVisualize
BU of 5boe by Molmil
Crystal structure of Staphylococcus aureus enolase in complex with PEP
Descriptor: Enolase, GLYCEROL, MAGNESIUM ION, ...
Authors:Wang, C.L, Wu, Y.F, Han, L, Wu, M.H, Zhang, X, Zang, J.Y.
Deposit date:2015-05-27
Release date:2015-12-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Octameric structure of Staphylococcus aureus enolase in complex with phosphoenolpyruvate
Acta Crystallogr.,Sect.D, 71, 2015
9BFG
DownloadVisualize
BU of 9bfg by Molmil
Structure of the crosslinked PCP-E didomain of tyrocidine synthetase A
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-pentyl-beta-alaninamide, ...
Authors:Heberlig, G.W, Burkart, M.D.
Deposit date:2024-04-17
Release date:2024-10-09
Last modified:2025-02-19
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Crosslinking intermodular condensation in non-ribosomal peptide biosynthesis.
Nature, 638, 2025
8F8E
DownloadVisualize
BU of 8f8e by Molmil
Crystal structure of the WDR domain of human DCAF1 in complex with OICR-8268 compound
Descriptor: (3P)-N-[(1S)-3-amino-1-(3-chloro-4-fluorophenyl)-3-oxopropyl]-3-(4-chloro-2-fluorophenyl)-1H-pyrazole-4-carboxamide, CITRIC ACID, DDB1- and CUL4-associated factor 1
Authors:Kimani, S, Li, A, Dong, A, Li, Y, Hutchinson, A, Seitova, A, Wilson, B, Al-Awar, R, Vedadi, M, Brown, P, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2022-11-21
Release date:2023-03-01
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of the WDR domain of human DCAF1 in complex with OICR-8268 compound
To be published
6IRZ
DownloadVisualize
BU of 6irz by Molmil
Crystal structure of the zebrafish cap-specific adenosine methyltransferase bound to SAH and m7G-capped RNA
Descriptor: 1,2-ETHANEDIOL, 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, PDX1 C-terminal-inhibiting factor 1, ...
Authors:Hirano, S, Nishimasu, H, Ishitani, R, Nureki, O.
Deposit date:2018-11-15
Release date:2018-12-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Cap-specific terminal N 6 -methylation of RNA by an RNA polymerase II-associated methyltransferase.
Science, 363, 2019
7VNT
DownloadVisualize
BU of 7vnt by Molmil
Structure of aminotransferase-substrate complex
Descriptor: 1,2-ETHANEDIOL, 454aa long hypothetical 4-aminobutyrate aminotransferase, GLYCEROL, ...
Authors:Sakuraba, H, Ohshida, T, Ohshima, T.
Deposit date:2021-10-12
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Crystal structure of a novel type of ornithine delta-aminotransferase from the hyperthermophilic archaeon Pyrococcus horikoshii.
Int.J.Biol.Macromol., 208, 2022
6IVO
DownloadVisualize
BU of 6ivo by Molmil
Crystal structure of a membrane protein P208A
Descriptor: 1,2-ETHANEDIOL, ACETIC ACID, CHLORIDE ION, ...
Authors:Kittredge, A, Fukuda, F, Zhang, Y, Yang, T.
Deposit date:2018-12-04
Release date:2019-11-06
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Dual Ca2+-dependent gates in human Bestrophin1 underlie disease-causing mechanisms of gain-of-function mutations.
Commun Biol, 2, 2019
4UDA
DownloadVisualize
BU of 4uda by Molmil
MR in complex with dexamethasone
Descriptor: DEXAMETHASONE, GLYCEROL, MINERALOCORTICOID RECEPTOR, ...
Authors:Edman, K, Hogner, A, Hussein, A, Bjursell, M, Aagaard, A, Backstrom, S, Bodin, C, Wissler, L, Jellesmark-Jensen, T, Cavallin, A, Karlsson, U, Nilsson, E, Lecina, D, Takahashi, R, Grebner, C, Lepisto, M, Guallar, V.
Deposit date:2014-12-09
Release date:2015-11-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Ligand Binding Mechanism in Steroid Receptors: From Conserved Plasticity to Differential Evolutionary Constraints.
Structure, 23, 2015
8F7B
DownloadVisualize
BU of 8f7b by Molmil
LRRC8A(T48D):C conformation 2 top focus
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Volume-regulated anion channel subunit LRRC8A,Soluble cytochrome b562, Volume-regulated anion channel subunit LRRC8C
Authors:Kern, D.M, Brohawn, S.G.
Deposit date:2022-11-18
Release date:2023-03-08
Last modified:2023-07-05
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Structural basis for assembly and lipid-mediated gating of LRRC8A:C volume-regulated anion channels.
Nat.Struct.Mol.Biol., 30, 2023
8F74
DownloadVisualize
BU of 8f74 by Molmil
LRRC8A(T48D):C conformation 2 top focus
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Volume-regulated anion channel subunit LRRC8A,Soluble cytochrome b562, Volume-regulated anion channel subunit LRRC8C
Authors:Kern, D.M, Brohawn, S.G.
Deposit date:2022-11-18
Release date:2023-03-08
Last modified:2023-07-05
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis for assembly and lipid-mediated gating of LRRC8A:C volume-regulated anion channels.
Nat.Struct.Mol.Biol., 30, 2023
9GLF
DownloadVisualize
BU of 9glf by Molmil
Anthraquinone Pigment Production Regulated by Cinnamic Acid
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, AntI, ...
Authors:Su, L, Schmalhofer, M, Grammbitter, G.L.C, Paczia, N, Glatter, T, Groll, M, Bode, H.B.
Deposit date:2024-08-27
Release date:2025-07-02
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The Isopropylstilbene Precursor Cinnamic Acid Inhibits Anthraquinone Pigment Production by Targeting AntI.
J.Am.Chem.Soc., 147, 2025
9BFK
DownloadVisualize
BU of 9bfk by Molmil
Cryo-EM structure of human CHT1 in the ML352 bound state
Descriptor: 4-methoxy-3-[(1-methylpiperidin-4-yl)oxy]-N-{[3-(propan-2-yl)-1,2-oxazol-5-yl]methyl}benzamide, High affinity choline transporter 1
Authors:Xue, J, Jiang, Y.
Deposit date:2024-04-18
Release date:2024-11-06
Last modified:2025-06-04
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Structural mechanisms of human sodium-coupled high-affinity choline transporter CHT1.
Cell Discov, 10, 2024
6I72
DownloadVisualize
BU of 6i72 by Molmil
Structure of Fragaria ananassa O-methyltransferase in complex with S-adenosylhomocysteine and caffeic acid
Descriptor: 1,2-ETHANEDIOL, CAFFEIC ACID, O-methyltransferase, ...
Authors:Heldner, A, Schiefner, A.
Deposit date:2018-11-15
Release date:2019-11-27
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural insights into enzymatic formation of the strawberry flavor compound 2,5-dimethyl-4-methoxy-3(2H)-furanone
To Be Published
9BYU
DownloadVisualize
BU of 9byu by Molmil
Structure and stability of an apo thermophilic esterase that hydrolyzes polyhydroxybutyrate
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Esterase, PHB depolymerase family, ...
Authors:Thomas, G.M, Quirk, S, Huard, D.J.E, Lieberman, R.L.
Deposit date:2024-05-24
Release date:2024-11-06
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure and stability of an apo thermophilic esterase that hydrolyzes polyhydroxybutyrate.
Acta Crystallogr D Struct Biol, 80, 2024
3JZS
DownloadVisualize
BU of 3jzs by Molmil
Human MDM2 liganded with a 12mer peptide inhibitor (pDIQ)
Descriptor: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase Mdm2, pDIQ peptide (12mer)
Authors:Schonbrunn, E, Phan, J.
Deposit date:2009-09-24
Release date:2009-11-10
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structure-based design of high affinity peptides inhibiting the interaction of p53 with MDM2 and MDMX.
J.Biol.Chem., 285, 2010
5NXY
DownloadVisualize
BU of 5nxy by Molmil
Crystal structure of OpuAC from B. subtilis in complex with Arsenobetaine
Descriptor: 1,2-ETHANEDIOL, 2-(trimethyl-lambda~5~-arsanyl)ethanol, Osmotically activated L-carnitine/choline ABC transporter substrate-binding protein OpuCC
Authors:Hofmann, T, Bremer, E, Schmitt, L, Smits, S.
Deposit date:2017-05-11
Release date:2018-03-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Arsenobetaine: an ecophysiologically important organoarsenical confers cytoprotection against osmotic stress and growth temperature extremes.
Environ. Microbiol., 20, 2018
8EMZ
DownloadVisualize
BU of 8emz by Molmil
Structure of GII.17 norovirus in complex with Nanobody 2
Descriptor: 1,2-ETHANEDIOL, GII.17 P domain, Nanobody 2
Authors:Kher, G, Sabin, C, Pancera, M, Koromyslova, A, Hansman, G.
Deposit date:2022-09-28
Release date:2023-03-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Direct Blockade of the Norovirus Histo-Blood Group Antigen Binding Pocket by Nanobodies.
J.Virol., 97, 2023
4ZEK
DownloadVisualize
BU of 4zek by Molmil
PBP AccA from A. tumefaciens C58 in complex with L-arabinose-2-isopropylphosphate
Descriptor: 1,2-ETHANEDIOL, 2-O-[(R)-hydroxy(propan-2-yloxy)phosphoryl]-alpha-L-arabinopyranose, 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL, ...
Authors:El Sahili, A, Morera, S.
Deposit date:2015-04-20
Release date:2015-08-19
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:A Pyranose-2-Phosphate Motif Is Responsible for Both Antibiotic Import and Quorum-Sensing Regulation in Agrobacterium tumefaciens.
Plos Pathog., 11, 2015
9KNG
DownloadVisualize
BU of 9kng by Molmil
Crystal structure of human ERRg LBD in complex with 4034496
Descriptor: 6-methyl-1,3-benzothiazole-2,4-diamine, Estrogen-related receptor gamma, Nuclear receptor-interacting protein 1
Authors:Xu, T, Wang, N, Liu, J.
Deposit date:2024-11-18
Release date:2025-04-16
Last modified:2025-09-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Identification of indoles as potential endogenous ligands of ERR gamma and their modulation on drug binding.
Acta Pharmacol.Sin., 46, 2025
5KON
DownloadVisualize
BU of 5kon by Molmil
Protruding domain of GII.4 human norovirus isolate 08-14
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, VP1
Authors:Singh, B.K, Hansman, G.S.
Deposit date:2016-07-01
Release date:2017-05-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Four decades of structural evolution of GII.4 norovirus
To be published
8IWO
DownloadVisualize
BU of 8iwo by Molmil
The rice Na+/H+ antiporter SOS1 in an auto-inhibited state
Descriptor: (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl tetradecanoate, OsSOS1
Authors:Zhang, X.Y, Tang, L.H, Zhang, C.R, Nie, J.W, Chen, Y.H.
Deposit date:2023-03-30
Release date:2023-11-22
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Structure and activation mechanism of the rice Salt Overly Sensitive 1 (SOS1) Na + /H + antiporter.
Nat.Plants, 9, 2023
9BCV
DownloadVisualize
BU of 9bcv by Molmil
Cyclase domain of GC-A bound to ANP
Descriptor: Atrial natriuretic peptide receptor 1, Fab fragment, MAGNESIUM ION, ...
Authors:Liu, S, Huang, X.
Deposit date:2024-04-09
Release date:2024-11-27
Last modified:2025-03-26
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Architecture and activation of single-pass transmembrane receptor guanylyl cyclase.
Nat.Struct.Mol.Biol., 32, 2025

245011

PDB entries from 2025-11-19

PDB statisticsPDBj update infoContact PDBjnumon