PDB Search results for query - Protein Data Bank Japan

PDB: 57 results

Crystal Structure of Bifidobacterium longum Multiple Inositol Polyphosphate Phosphatase Apo Form
Descriptor:	Histidine acid phosphatase, ZINC ION
Authors:	Li, A.W.H, Brearley, C.A, Hemmings, A.M.
Deposit date:	2019-06-07
Release date:	2020-07-08
Last modified:	2024-01-24
Method:	X-RAY DIFFRACTION (1.65 Å)
Cite:	Snapshots during the catalytic cycle of a histidine acid phytase reveal an induced-fit structural mechanism. J.Biol.Chem., 295, 2020

7QAZ

Prim-Pol Domain of CRISPR-associated Prim-Pol (CAPP) from Marinitoga sp. 1137 - Primer Initiation Complex
Descriptor:	2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, COBALT (II) ION, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:	Li, A.W.H, Doherty, A.J.
Deposit date:	2021-11-17
Release date:	2022-05-04
Last modified:	2024-01-31
Method:	X-RAY DIFFRACTION (2.11 Å)
Cite:	Molecular basis for the initiation of DNA primer synthesis. Nature, 605, 2022

7NQF

Prim-Pol Domain of CRISPR-associated Prim-Pol (CAPP) from Marinitoga sp. 1137 with dsDNA
Descriptor:	COBALT (II) ION, DNA(CGTGDG), TPR_REGION domain-containing protein
Authors:	Li, A.W.H, Doherty, A.J.
Deposit date:	2021-03-01
Release date:	2022-05-04
Last modified:	2024-01-31
Method:	X-RAY DIFFRACTION (2.02 Å)
Cite:	Molecular basis for the initiation of DNA primer synthesis. Nature, 605, 2022

7P9J

Prim-Pol Domain of CRISPR-associated Prim-Pol (CAPP) from Marinitoga sp. 1137 - Primer Initiation Complex
Descriptor:	2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, COBALT (II) ION, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:	Li, A.W.H, Doherty, A.J.
Deposit date:	2021-07-27
Release date:	2022-05-04
Last modified:	2024-01-31
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Molecular basis for the initiation of DNA primer synthesis. Nature, 605, 2022

7NQD

Prim-Pol Domain of CRISPR-associated Prim-Pol (CAPP) from Marinitoga sp. 1137
Descriptor:	TPR_REGION domain-containing protein
Authors:	Li, A.W.H, Doherty, A.J.
Deposit date:	2021-03-01
Release date:	2022-05-04
Last modified:	2022-06-08
Method:	X-RAY DIFFRACTION (2.97 Å)
Cite:	Molecular basis for the initiation of DNA primer synthesis. Nature, 605, 2022

7NQE

Prim-Pol Domain of CRISPR-associated Prim-Pol (CAPP) from Marinitoga sp. 1137 with dGTP
Descriptor:	1,2-ETHANEDIOL, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, ...
Authors:	Li, A.W.H, Doherty, A.J.
Deposit date:	2021-03-01
Release date:	2022-05-04
Last modified:	2024-01-31
Method:	X-RAY DIFFRACTION (1.28 Å)
Cite:	Molecular basis for the initiation of DNA primer synthesis. Nature, 605, 2022

8BGJ

Crystal structure of Reverse Transcriptase domain from Caloramator australicus CART-CAPP
Descriptor:	L(+)-TARTARIC ACID, MAGNESIUM ION, PENTAETHYLENE GLYCOL, ...
Authors:	Li, A.W.H, Doherty, A.J.
Deposit date:	2022-10-27
Release date:	2023-06-07
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.63 Å)
Cite:	Reverse transcriptases prime DNA synthesis. Nucleic Acids Res., 51, 2023

5HY6

Spodoptera frugiperda eukaryotic translation initiation factor EIF5A
Descriptor:	Eukaryotic translation initiation factor 5A
Authors:	Li, A.W.H, Oliver, A.W, Pearl, L.H.
Deposit date:	2016-02-01
Release date:	2016-02-10
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (2.186 Å)
Cite:	Structure of Spodoptera frugiperda eukaryotic translation initiation factor EIF5A To Be Published

5CU7

Bacteroides Thetaiotaomicron Multiple Inositol Polyphosphate Phosphatase A324D Mutant
Descriptor:	PHOSPHATE ION, multiple inositol polyphosphate histidine phosphatase 1
Authors:	Li, A.W.H, Hemmings, A.M.
Deposit date:	2015-07-24
Release date:	2016-08-17
Method:	X-RAY DIFFRACTION (1.73 Å)
Cite:	The Hydrolytic Positional Specificity Towards Phytic Acid of a Bacterial Multiple Inositol Polyphosphate Phosphatase To be published

8H4P

class I sesquiterpene synthase
Descriptor:	Longiborneol synthase CLM1, MAGNESIUM ION, N-benzyl-N,N-diethylethanaminium, ...
Authors:	Li, A.N, Lou, T.T, Ma, M.
Deposit date:	2022-10-11
Release date:	2023-08-23
Method:	X-RAY DIFFRACTION (1.47 Å)
Cite:	Structural Insights into Three Sesquiterpene Synthases for the Biosynthesis of Tricyclic Sesquiterpenes and Chemical Space Expansion by Structure-Based Mutagenesis. J.Am.Chem.Soc., 2023

5CX4

Crystal Structure of a Multiple Inositol Polyphosphate Phosphatase
Descriptor:	PHOSPHATE ION, multiple inositol polyphosphate histidine phosphatase 1
Authors:	Li, A.W.H, Hemmings, A.M.
Deposit date:	2015-07-28
Release date:	2016-08-17
Method:	X-RAY DIFFRACTION (2.06 Å)
Cite:	The Hydrolytic Positional Specificity Towards Phytic Acid of a Bacterial Multiple Inositol Polyphosphate Phosphatase To be published

4FDU

Crystal Structure of a Multiple Inositol Polyphosphate Phosphatase
Descriptor:	1,2-ETHANEDIOL, D-MYO-INOSITOL-HEXASULPHATE, Putative multiple inositol polyphosphate histidine phosphatase 1
Authors:	Li, A.W.H, Hemmings, A.M.
Deposit date:	2012-05-29
Release date:	2014-01-29
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (2.293 Å)
Cite:	A Bacterial Homolog of a Eukaryotic Inositol Phosphate Signaling Enzyme Mediates Cross-kingdom Dialog in the Mammalian Gut. Cell Rep, 6, 2014

4FDT

Crystal Structure of a Multiple Inositol Polyphosphate Phosphatase
Descriptor:	1,2-ETHANEDIOL, PHOSPHATE ION, Putative multiple inositol polyphosphate histidine phosphatase 1
Authors:	Li, A.W.H, Hemmings, A.M.
Deposit date:	2012-05-29
Release date:	2014-01-29
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (1.93 Å)
Cite:	A Bacterial Homolog of a Eukaryotic Inositol Phosphate Signaling Enzyme Mediates Cross-kingdom Dialog in the Mammalian Gut. Cell Rep, 6, 2014

3RV5

Crystal structure of human cardiac troponin C regulatory domain in complex with cadmium and deoxycholic acid
Descriptor:	(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID, CADMIUM ION, CALCIUM ION, ...
Authors:	Li, A.Y, Lee, J, Borek, D, Otwinowski, Z, Tibbits, G, Paetzel, M.
Deposit date:	2011-05-06
Release date:	2011-08-31
Last modified:	2011-11-16
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Crystal structure of cardiac troponin C regulatory domain in complex with cadmium and deoxycholic Acid reveals novel conformation. J.Mol.Biol., 413, 2011

5X5W

Crystal structure of pseudorabies virus glycoprotein D
Descriptor:	GD, Nectin-1
Authors:	Li, A, Lu, G, Qi, J, Wu, L, Tian, K, Luo, T, Shi, Y, Yan, J, Gao, G.F.
Deposit date:	2017-02-17
Release date:	2017-04-26
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	Crystal structure of pseudorabies virus glycoprotein D To Be Published

8BAO

Dysgonamonadaceae bacterium CRISPR ancillary nuclease 2
Descriptor:	BROMIDE ION, Cyclic tetra-adenylate (cA4), DUF1887 family protein, ...
Authors:	Li, A.W.H, Doherty, A.J.
Deposit date:	2022-10-11
Release date:	2022-11-30
Last modified:	2023-08-23
Method:	X-RAY DIFFRACTION (2.06 Å)
Cite:	Reverse transcriptases prime DNA synthesis. Nucleic Acids Res., 51, 2023

5X5V

Crystal structure of pseudorabies virus glycoprotein D
Descriptor:	GD
Authors:	Li, A, Lu, G, Qi, J, Wu, L, Tian, K, Luo, T, Shi, Y, Yan, J, Gao, G.F.
Deposit date:	2017-02-17
Release date:	2017-04-26
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	Crystal structure of pseudorabies virus glycoprotein D To Be Published

4WHG

Crystal Structure of TR3 LBD in complex with Molecule 3
Descriptor:	1-(3,4,5-trihydroxyphenyl)octan-1-one, GLYCEROL, Nuclear receptor subfamily 4 group A member 1
Authors:	Li, F.W, Cai, Q.X, Li, A.Z, Tian, X.Y, Wang, W.J, Wang, Y, Hou, P.P, Wu, Q, Lin, T.W.
Deposit date:	2014-09-22
Release date:	2015-09-09
Last modified:	2024-03-20
Method:	X-RAY DIFFRACTION (2.18 Å)
Cite:	Induction of Autophagic Death in Cancer Cells by Agonizing TR3 and Attenuating Akt2 Activity Chem.Biol., 22, 2015

4WHF

Crystal Structure of TR3 LBD in complex with 1-(3,4,5-trihydroxyphenyl)decan-1-one
Descriptor:	1-(3,4,5-trihydroxyphenyl)decan-1-one, GLYCEROL, Nuclear receptor subfamily 4 group A member 1
Authors:	Li, F.W, Cai, Q.X, Li, A.Z, Tian, X.Y, Wang, W.J, Wang, Y, Hou, P.P, Wu, Q, Lin, T.W.
Deposit date:	2014-09-22
Release date:	2015-09-09
Last modified:	2024-03-20
Method:	X-RAY DIFFRACTION (2.27 Å)
Cite:	Induction of Autophagic Death in Cancer Cells by Agonizing TR3 and Attenuating Akt2 Activity Chem.Biol., 22, 2015

7SSE

Crystal structure of the WDR domain of human DCAF1 in complex with CYCA-117-70
Descriptor:	DDB1- and CUL4-associated factor 1, N-[(3R)-1-(3-fluorophenyl)piperidin-3-yl]-6-(morpholin-4-yl)pyrimidin-4-amine
Authors:	Kimani, S, Owen, J, Li, A, Dong, A, Li, Y, Hutchinson, A, Seitova, A, Shahani, V.M, Schapira, M, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:	2021-11-10
Release date:	2021-12-15
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.62 Å)
Cite:	Discovery of a Novel DCAF1 Ligand Using a Drug-Target Interaction Prediction Model: Generalizing Machine Learning to New Drug Targets. J.Chem.Inf.Model., 63, 2023

4RZF

Crystal Structure Analysis of the NUR77 Ligand Binding Domain, S441W mutant
Descriptor:	GLYCEROL, Nuclear receptor subfamily 4 group A member 1
Authors:	Li, F, Tian, X, Li, A, Li, L, Liu, Y, Chen, H, Wu, Q, Lin, T.
Deposit date:	2014-12-21
Release date:	2015-03-18
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (1.99 Å)
Cite:	Impeding the interaction between Nur77 and p38 reduces LPS-induced inflammation. Nat.Chem.Biol., 11, 2015

4RZG

Crystal Structure Analysis of the DNPA-bounded NUR77 Ligand binding Domain
Descriptor:	GLYCEROL, Nuclear receptor subfamily 4 group A member 1, pentyl (3,5-dihydroxy-2-nonanoylphenyl)acetate
Authors:	Li, F, Tian, X, Li, A, Li, L, Liu, Y, Chen, H, Wu, Q, Lin, T.
Deposit date:	2014-12-21
Release date:	2015-03-18
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	Impeding the interaction between Nur77 and p38 reduces LPS-induced inflammation. Nat.Chem.Biol., 11, 2015

4RE8

Crystal Structure of TR3 LBD in complex with Molecule 5
Descriptor:	1-(3,4,5-trihydroxyphenyl)dodecan-1-one, GLYCEROL, Nuclear receptor subfamily 4 group A member 1
Authors:	Li, F.W, Cai, Q.X, Li, A.Z, Tian, X.Y, Weijia, W, Yuan, W, Hou, P.P, Wu, Q, Lin, T.W.
Deposit date:	2014-09-22
Release date:	2015-09-09
Last modified:	2024-03-20
Method:	X-RAY DIFFRACTION (2.16 Å)
Cite:	Induction of Autophagic Death in Cancer Cells by Agonizing TR3 and Attenuating Akt2 Activity Chem.Biol., 22, 2015

4REF

Crystal Structure of TR3 LBD_L449W in complex with Molecule 2
Descriptor:	1-(3,4,5-trihydroxyphenyl)hexan-1-one, GLYCEROL, Nuclear receptor subfamily 4 group A member 1
Authors:	Li, F.W, Cai, Q.X, Li, A.Z, Tian, X.Y, Wang, W.J, Yuan, W, Hou, P.P, Wu, Q, Lin, T.W.
Deposit date:	2014-09-22
Release date:	2015-09-09
Last modified:	2024-03-20
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Induction of Autophagic Death in Cancer Cells by Agonizing TR3 and Attenuating Akt2 Activity Chem.Biol., 22, 2015

4REE

Crystal Structure of TR3 LBD in complex with Molecule 6
Descriptor:	1-(2,3,4-trihydroxyphenyl)nonan-1-one, GLYCEROL, Nuclear receptor subfamily 4 group A member 1
Authors:	Li, F.W, Cai, Q.X, Li, A.Z, Tian, X.Y, Wang, W.J, Yuan, W, Hou, P.P, Wu, Q, Lin, T.W.
Deposit date:	2014-09-22
Release date:	2015-09-09
Last modified:	2017-11-22
Method:	X-RAY DIFFRACTION (2.37 Å)
Cite:	Induction of Autophagic Death in Cancer Cells by Agonizing TR3 and Attenuating Akt2 Activity Chem.Biol., 22, 2015

12 3 >

Total results:	57
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Li, A"