PDB: 10863 resultsInfo pagesStatus searchChemie searchBIRD

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5BT1	histone chaperone Hif1 playing with histone H2A-H2B dimer Descriptor: HAT1-interacting factor 1, Histone H2A.1, Histone H2B.1 Authors: Liu, H, Zhang, M, Gao, Y, Teng, M, Niu, L. Deposit date: 2015-06-02 Release date: 2016-10-26 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.62 Å) Cite: Structural Insights into the Association of Hif1 with Histones H2A-H2B Dimer and H3-H4 Tetramer Structure, 24, 2016
3ASM	Crystal structure of Q54A mutant protein of Bst-RNase HIII Descriptor: Ribonuclease HIII Authors: Angkawidjaja, C, Kanaya, S. Deposit date: 2010-12-16 Release date: 2011-06-08 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.603 Å) Cite: Identification of the substrate binding site in the N-terminal TBP-like domain of RNase H3. Febs Lett., 585, 2011
8CIL	Crystal structure of Coxiella burnetii Fic protein 2 Descriptor: Fic family protein Authors: Hoepfner, D, Itzen, A, Pogenberg, V. Deposit date: 2023-02-10 Release date: 2023-11-15 Method: X-RAY DIFFRACTION (1.98 Å) Cite: The DNA-binding induced (de)AMPylation activity of a Coxiella burnetii Fic enzyme targets Histone H3. Commun Biol, 6, 2023
4GUS	Crystal structure of LSD2-NPAC with H3 in space group P3221 Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, Histone H3.3, ... Authors: Chen, F, Dong, Z, Fang, J, Yang, Y, Li, Z, Xu, Y, Yang, H, Wang, P, Fang, R, Shi, Y, Xu, Y. Deposit date: 2012-08-29 Release date: 2013-01-16 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.23 Å) Cite: LSD2/KDM1B and its cofactor NPAC/GLYR1 endow a structural and molecular model for regulation of H3K4 demethylation Mol.Cell, 49, 2013
4GUR	Crystal structure of LSD2-NPAC with H3 in space group P21 Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, Histone H3.3, ... Authors: Chen, F, Dong, Z, Fang, J, Yang, Y, Li, Z, Xu, Y, Yang, H, Wang, P, Fang, R, Shi, Y, Xu, Y. Deposit date: 2012-08-29 Release date: 2013-01-16 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.506 Å) Cite: LSD2/KDM1B and its cofactor NPAC/GLYR1 endow a structural and molecular model for regulation of H3K4 demethylation Mol.Cell, 49, 2013
3JVK	Crystal structure of bromodomain 1 of mouse Brd4 in complex with histone H3-K(ac)14 Descriptor: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, histone H3.3 peptide Authors: Vollmuth, F, Blankenfeldt, W, Geyer, M. Deposit date: 2009-09-17 Release date: 2009-10-13 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structures of the Dual Bromodomains of the P-TEFb-activating Protein Brd4 at Atomic Resolution J.Biol.Chem., 284, 2009
3KMT	Crystal structure of vSET/SAH/H3 ternary complex Descriptor: A612L protein, Histone H3, S-ADENOSYL-L-HOMOCYSTEINE Authors: Wei, H, Zhou, M.M. Deposit date: 2009-11-11 Release date: 2010-11-10 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Dimerization of a viral SET protein endows its function. Proc.Natl.Acad.Sci.USA, 107, 2010
2RSD	Solution structure of the plant homeodomain (PHD) of the E3 SUMO ligase Siz1 from rice Descriptor: E3 SUMO-protein ligase SIZ1, ZINC ION Authors: Shindo, H, Tsuchiya, W, Suzuki, R, Yamazaki, T. Deposit date: 2012-01-12 Release date: 2012-08-15 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: PHD finger of the SUMO ligase Siz/PIAS family in rice reveals specific binding for methylated histone H3 at lysine 4 and arginine 2 Febs Lett., 586, 2012
2F5K	Crystal structure of the chromo domain of human MRG15 Descriptor: Mortality factor 4-like protein 1 Authors: Zhang, P, Du, J, Ding, J. Deposit date: 2005-11-26 Release date: 2006-11-14 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure of human MRG15 chromo domain and its binding to Lys36-methylated histone H3. Nucleic Acids Res., 34, 2006
8JWU	PHD Finger Protein 7 (PHF7) fused to UBE2D2 via a (GSGG)3 linker Descriptor: PHD finger protein 7,Ubiquitin-conjugating enzyme E2 D2, ZINC ION Authors: Lee, H.S, Bang, I, Choi, H.-J. Deposit date: 2023-06-29 Release date: 2023-12-20 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.58 Å) Cite: Molecular basis for PHF7-mediated ubiquitination of histone H3. Genes Dev., 37, 2023
8JWS	ePHD domain of PHD Finger Protein 7 (PHF7) Descriptor: 1,2-ETHANEDIOL, PHD finger protein 7, ZINC ION Authors: Bang, I, Lee, H.S, Choi, H.-J. Deposit date: 2023-06-29 Release date: 2023-12-20 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2 Å) Cite: Molecular basis for PHF7-mediated ubiquitination of histone H3. Genes Dev., 37, 2023
8JWJ	PHD Finger Protein 7 (PHF7) in complex with UBE2D2 Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GLYCEROL, PHD finger protein 7, ... Authors: Lee, H.S, Bang, I, Choi, H.-J. Deposit date: 2023-06-29 Release date: 2023-12-20 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.96 Å) Cite: Molecular basis for PHF7-mediated ubiquitination of histone H3. Genes Dev., 37, 2023
3O34	Crystal structure of TRIM24 PHD-Bromo complexed with H3(13-32)K23ac peptide Descriptor: BIOTIN, Histone H3.1, Transcription intermediary factor 1-alpha, ... Authors: Wang, Z, Patel, D.J. Deposit date: 2010-07-23 Release date: 2010-12-15 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: TRIM24 links a non-canonical histone signature to breast cancer. Nature, 468, 2010
4EO5	Yeast Asf1 bound to H3/H4G94P mutant Descriptor: ACETATE ION, GLYCEROL, Histone H3.2, ... Authors: Scorgie, J.K, Churchill, M.E. Deposit date: 2012-04-13 Release date: 2012-06-13 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.35 Å) Cite: The conformational flexibility of the C-terminus of histone H4 promotes histone octamer and nucleosome stability and yeast viability. Epigenetics Chromatin, 5, 2012
7VRF	Crystal structure of Oxpecker chromodomain in complex with H3K9me3 Descriptor: H3K9me3, Oxpecker Authors: Huang, Y, Jin, Z, Yu, B. Deposit date: 2021-10-22 Release date: 2022-10-26 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural insights into the chromodomain of Oxpecker in complex with histone H3 lysine 9 trimethylation reveal a transposon silencing mechanism by heterodimerization. Biochem.Biophys.Res.Commun., 652, 2023
5SZB	Structure of human Dpf3 double-PHD domain bound to histone H3 tail peptide with acetylated K14 Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Histone H3 tail peptide, ZINC ION, ... Authors: Singh, N, Local, A, Shiau, A, Ren, B, Corbett, K.D. Deposit date: 2016-08-13 Release date: 2017-08-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Identification of H3K4me1-associated proteins at mammalian enhancers. Nat. Genet., 50, 2018
3SHB	Crystal Structure of PHD Domain of UHRF1 Descriptor: E3 ubiquitin-protein ligase UHRF1, Histone H3 peptide, ZINC ION Authors: Hu, L, Li, Z, Wang, P, Lin, Y, Xu, Y. Deposit date: 2011-06-16 Release date: 2011-08-24 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure of PHD domain of UHRF1 and insights into recognition of unmodified histone H3 arginine residue 2. Cell Res., 2011
5U7G	Crystal Structure of the Catalytic Core of CBP Descriptor: CREB-binding protein, ZINC ION Authors: Park, S, Stanfield, R.L, Martinez-Yamout, M.M, Dyson, H.J, Wilson, I.A, Wright, P.E. Deposit date: 2016-12-12 Release date: 2017-06-21 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.401 Å) Cite: Role of the CBP catalytic core in intramolecular SUMOylation and control of histone H3 acetylation. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
3UEG	Crystal structure of human Survivin K62A mutant Descriptor: 1,2-ETHANEDIOL, Baculoviral IAP repeat-containing protein 5, TETRAETHYLENE GLYCOL, ... Authors: Niedzialkowska, E, Porebski, P.J, Wang, F, Higgins, J.M, Stukenberg, P.T, Minor, W. Deposit date: 2011-10-30 Release date: 2012-03-07 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Molecular basis for phosphospecific recognition of histone H3 tails by Survivin paralogues at inner centromeres. Mol.Biol.Cell, 23, 2012
3UIK	crystal structure of human Survivin mutant K62Y/H80W in complex with H3(1-10) peptide Descriptor: Baculoviral IAP repeat-containing protein 5, ZINC ION, histone H3(1-10) peptide Authors: Du, J, Patel, D.J. Deposit date: 2011-11-04 Release date: 2012-02-01 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.701 Å) Cite: Structural Basis for Recognition of H3T3ph and Smac/DIABLO N-terminal Peptides by Human Survivin. Structure, 20, 2012
3UEI	Crystal structure of human Survivin E65A mutant Descriptor: Baculoviral IAP repeat-containing protein 5, ZINC ION Authors: Niedzialkowska, E, Porebski, P.J, Wang, F, Higgins, J.M, Stukenberg, P.T, Minor, W. Deposit date: 2011-10-30 Release date: 2012-03-07 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Molecular basis for phosphospecific recognition of histone H3 tails by Survivin paralogues at inner centromeres. Mol Biol Cell, 23, 2012
5VNA	Crystal structure of human YEATS domain Descriptor: 1,2-ETHANEDIOL, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, SULFATE ION, ... Authors: Cho, H.J, Cierpicki, T. Deposit date: 2017-04-29 Release date: 2018-09-05 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.1 Å) Cite: GAS41 Recognizes Diacetylated Histone H3 through a Bivalent Binding Mode. ACS Chem. Biol., 13, 2018
2C5Z	Structure and CTD binding of the Set2 SRI domain Descriptor: SET DOMAIN PROTEIN 2 Authors: Vojnic, E, Simon, B, Strahl, B.D, Sattler, M, Cramer, P. Deposit date: 2005-11-03 Release date: 2005-11-14 Last modified: 2018-05-09 Method: SOLUTION NMR Cite: Structure and carboxyl-terminal domain (CTD) binding of the Set2 SRI domain that couples histone H3 Lys36 methylation to transcription. J. Biol. Chem., 281, 2006
3UEH	Crystal structure of human Survivin H80A mutant Descriptor: 1,2-ETHANEDIOL, Baculoviral IAP repeat-containing protein 5, DI(HYDROXYETHYL)ETHER, ... Authors: Niedzialkowska, E, Porebski, P.J, Wang, F, Higgins, J.M, Stukenberg, P.T, Minor, W. Deposit date: 2011-10-30 Release date: 2012-03-07 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Molecular basis for phosphospecific recognition of histone H3 tails by Survivin paralogues at inner centromeres. Mol Biol Cell, 23, 2012
3UIG	crystal structure of human Survivin in complex with T3 phosphorylated H3(1-15) peptide Descriptor: Baculoviral IAP repeat-containing protein 5, T3 phosphorylated H3(1-15) peptide, ZINC ION Authors: Du, J, Patel, D.J. Deposit date: 2011-11-04 Release date: 2012-02-01 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural Basis for Recognition of H3T3ph and Smac/DIABLO N-terminal Peptides by Human Survivin. Structure, 20, 2012

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