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7ZX7	Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (CC) Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Rengachari, S, Schilbach, S, Kaliyappan, T, Gouge, J, Zumer, K, Schwarz, J, Urlaub, H, Dienemann, C, Vannini, A, Cramer, P. Deposit date: 2022-05-20 Release date: 2022-11-30 Last modified: 2022-12-28 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural basis of SNAPc-dependent snRNA transcription initiation by RNA polymerase II. Nat.Struct.Mol.Biol., 29, 2022
7ZX8	Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (OC) Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Rengachari, S, Schilbach, S, Kaliyappan, T, Gouge, J, Zumer, K, Schwarz, J, Urlaub, H, Dienemann, C, Vannini, A, Cramer, P. Deposit date: 2022-05-20 Release date: 2022-12-07 Last modified: 2022-12-28 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural basis of SNAPc-dependent snRNA transcription initiation by RNA polymerase II. Nat.Struct.Mol.Biol., 29, 2022
4U8T	Crystal structure of YTH domain of Zygosaccharomyces rouxii MRB1 protein in complex with N6-Methyladenosine RNA Descriptor: RNA (5'-R(*AP*GP*GP*(6MZ)P*CP*AP*U)-3'), ZYRO0G01672p Authors: Luo, S, Tong, L. Deposit date: 2014-08-04 Release date: 2014-09-10 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Molecular basis for the recognition of methylated adenines in RNA by the eukaryotic YTH domain. Proc.Natl.Acad.Sci.USA, 111, 2014
6UPZ	RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3 Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Oh, J, Wang, D. Deposit date: 2019-10-18 Release date: 2020-06-10 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.1 Å) Cite: RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions. Proc.Natl.Acad.Sci.USA, 117, 2020
6UPY	RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 2E Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Oh, J, Wang, D. Deposit date: 2019-10-18 Release date: 2020-06-10 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.4 Å) Cite: RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions. Proc.Natl.Acad.Sci.USA, 117, 2020
6UQ3	RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 5 Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Oh, J, Wang, D. Deposit date: 2019-10-18 Release date: 2020-06-10 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.47 Å) Cite: RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions. Proc.Natl.Acad.Sci.USA, 117, 2020
6UPX	RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 1 Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Oh, J, Wang, D. Deposit date: 2019-10-18 Release date: 2020-06-10 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.4 Å) Cite: RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions. Proc.Natl.Acad.Sci.USA, 117, 2020
6UQ0	RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4 Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Oh, J, Wang, D. Deposit date: 2019-10-18 Release date: 2020-06-10 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.56 Å) Cite: RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions. Proc.Natl.Acad.Sci.USA, 117, 2020
6UQ2	RNA polymerase II elongation complex with dG in state 1 Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Oh, J, Wang, D. Deposit date: 2019-10-18 Release date: 2020-06-10 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.2 Å) Cite: RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions. Proc.Natl.Acad.Sci.USA, 117, 2020
6UQ1	RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 6 Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Oh, J, Wang, D. Deposit date: 2019-10-18 Release date: 2020-06-10 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.6 Å) Cite: RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions. Proc.Natl.Acad.Sci.USA, 117, 2020
7C7A	Cryo-EM structure of yeast Ribonuclease MRP with substrate ITS1 Descriptor: Internal Transcribed Spacer 1, MAGNESIUM ION, RNases MRP/P 32.9 kDa subunit, ... Authors: Lan, P, Wu, J, Lei, M. Deposit date: 2020-05-24 Release date: 2020-07-08 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structural insight into precursor ribosomal RNA processing by ribonuclease MRP. Science, 369, 2020
6UFM	Cocrystal Structure of the Nocardia farcinica ileS T-box riboswitch in complex with its cognate tRNA Descriptor: RNA (77-MER), RNA (98-MER), SULFATE ION Authors: Suddala, K.C, Zhang, J. Deposit date: 2019-09-24 Release date: 2019-12-04 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.82 Å) Cite: High-affinity recognition of specific tRNAs by an mRNA anticodon-binding groove. Nat.Struct.Mol.Biol., 26, 2019
5EPI	CRYSTAL STRUCTURE OF INFLUENZA B POLYMERASE WITH BOUND 5' CRNA EXHIBITS A NOVEL DOMAIN ARRANGEMENT Descriptor: CRNA 5' END, Polymerase acidic protein, Polymerase basic protein 2, ... Authors: Guilligay, D, Cusack, S. Deposit date: 2015-11-11 Release date: 2016-01-13 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (4.1 Å) Cite: Influenza Polymerase Can Adopt an Alternative Configuration Involving a Radical Repacking of PB2 Domains. Mol.Cell, 61, 2016
7SP1	RNA-induced tau amyloid fibril Descriptor: Isoform Tau-F of Microtubule-associated protein tau, RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') Authors: Abskharon, R, Sawaya, M.R, Boyer, D.R, Eisenberg, D.S. Deposit date: 2021-11-02 Release date: 2022-03-30 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Cryo-EM structure of RNA-induced tau fibrils reveals a small C-terminal core that may nucleate fibril formation. Proc.Natl.Acad.Sci.USA, 119, 2022
8TFI	tRNA 2'-phosphotransferase (Tpt1) from Pyrococcus horikoshii Descriptor: CHLORIDE ION, Probable RNA 2'-phosphotransferase Authors: Jacewicz, A, Dantuluri, S, Shuman, S. Deposit date: 2023-07-11 Release date: 2023-11-08 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Structural basis for Tpt1-catalyzed 2'-PO 4 transfer from RNA and NADP(H) to NAD. Proc.Natl.Acad.Sci.USA, 120, 2023
8TFX	tRNA 2'-phosphotransferase (Tpt1) from Pyrococcus horikoshii in complex with 2',5'-ADP Descriptor: 1,2-ETHANEDIOL, ADENOSINE-2'-5'-DIPHOSPHATE, CHLORIDE ION, ... Authors: Jacewicz, A, Dantuluri, S, Shuman, S. Deposit date: 2023-07-12 Release date: 2023-11-08 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural basis for Tpt1-catalyzed 2'-PO 4 transfer from RNA and NADP(H) to NAD. Proc.Natl.Acad.Sci.USA, 120, 2023
8TFY	tRNA 2'-phosphotransferase (Tpt1) from Pyrococcus horikoshii in complex with NADP Descriptor: CHLORIDE ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Probable RNA 2'-phosphotransferase Authors: Jacewicz, A, Dantuluri, S, Shuman, S. Deposit date: 2023-07-12 Release date: 2023-11-08 Method: X-RAY DIFFRACTION (1.54 Å) Cite: Structural basis for Tpt1-catalyzed 2'-PO 4 transfer from RNA and NADP(H) to NAD. Proc.Natl.Acad.Sci.USA, 120, 2023
8TFZ	tRNA 2'-phosphotransferase (Tpt1) from Pyrococcus horikoshii in complex with NAD Descriptor: CHLORIDE ION, GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... Authors: Jacewicz, A, Dantuluri, S, Shuman, S. Deposit date: 2023-07-12 Release date: 2023-11-08 Method: X-RAY DIFFRACTION (2.06 Å) Cite: Structural basis for Tpt1-catalyzed 2'-PO 4 transfer from RNA and NADP(H) to NAD. Proc.Natl.Acad.Sci.USA, 120, 2023
5KL8	Crystal structure of the Pumilio-Nos-CyclinB RNA complex Descriptor: Maternal protein pumilio, Protein nanos, RNA (5'-R(*UP*AP*UP*UP*UP*GP*UP*AP*AP*UP*U)-3'), ... Authors: Qiu, C, Hall, T.M.T. Deposit date: 2016-06-23 Release date: 2016-08-17 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (4 Å) Cite: Drosophila Nanos acts as a molecular clamp that modulates the RNA-binding and repression activities of Pumilio. Elife, 5, 2016
8TG3	tRNA 2'-phosphotransferase (Tpt1) from Aeropyrum pernix in complex with ADP-ribose-1" -phosphate Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, NITRATE ION, ... Authors: Jacewicz, A, Dantuluri, S, Shuman, S. Deposit date: 2023-07-12 Release date: 2023-11-08 Method: X-RAY DIFFRACTION (1.47 Å) Cite: Structural basis for Tpt1-catalyzed 2'-PO 4 transfer from RNA and NADP(H) to NAD. Proc.Natl.Acad.Sci.USA, 120, 2023
8TG6	tRNA 2'-phosphotransferase (Tpt1) from Aeropyrum pernix in complex with sulfate anions Descriptor: CHLORIDE ION, Probable RNA 2'-phosphotransferase, SULFATE ION Authors: Jacewicz, A, Dantuluri, S, Shuman, S. Deposit date: 2023-07-12 Release date: 2023-11-08 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structural basis for Tpt1-catalyzed 2'-PO 4 transfer from RNA and NADP(H) to NAD. Proc.Natl.Acad.Sci.USA, 120, 2023
7VNW	Crystal Structure of tRNAVal from Sulfolobus Tokodaii(Dephosphorylated) Descriptor: RNA (78-MER) Authors: Yamashita, S, Ohira, T, Suzuki, T, Tomtia, K. Deposit date: 2021-10-12 Release date: 2022-05-04 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.61 Å) Cite: Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance. Nature, 605, 2022
7VNV	Crystal Structure of tRNAVal from Sulfolobus Tokodaii Descriptor: RNA (78-MER) Authors: Yamashita, S, Ohira, T, Suzuki, T, Tomtia, K. Deposit date: 2021-10-12 Release date: 2022-05-04 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance. Nature, 605, 2022
5LWJ	Solution NMR structure of the GTP binding Class II RNA aptamer-ligand-complex containing a protonated adenine nucleotide with a highly shifted pKa. Descriptor: GTP Class II RNA (34-MER), GUANOSINE-5'-TRIPHOSPHATE Authors: Wolter, A.C, Weickhmann, A.K, Nasiri, A.H, Hantke, K, Ohlenschlaeger, O, Wunderlich, C.H, Kreutz, C, Duchardt-Ferner, E, Woehnert, J. Deposit date: 2016-09-17 Release date: 2016-12-14 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: A Stably Protonated Adenine Nucleotide with a Highly Shifted pKa Value Stabilizes the Tertiary Structure of a GTP-Binding RNA Aptamer. Angew. Chem. Int. Ed. Engl., 56, 2017
6S8Q	Human Brr2 Helicase Region in complex with C-tail deleted Jab1 Descriptor: Pre-mRNA-processing-splicing factor 8, SULFATE ION, U5 small nuclear ribonucleoprotein 200 kDa helicase Authors: Santos, K.F, Vester, K, Wahl, M.C. Deposit date: 2019-07-10 Release date: 2020-01-22 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (2.391 Å) Cite: The inactive C-terminal cassette of the dual-cassette RNA helicase BRR2 both stimulates and inhibits the activity of the N-terminal helicase unit. J.Biol.Chem., 295, 2020

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