Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6DHB
DownloadVisualize
BU of 6dhb by Molmil
Crystal structure of the human TIM-3 with bound Calcium
Descriptor: 1,2-ETHANEDIOL, BENZOIC ACID, CALCIUM ION, ...
Authors:Gandhi, A.K, Kim, W.M, Huang, Y.H, Bonsor, D, Sundberg, E, Sun, Z.-Y, Petsko, G.A, Kuchroo, V, Blumberg, R.S.
Deposit date:2018-05-19
Release date:2018-12-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:High resolution X-ray and NMR structural study of human T-cell immunoglobulin and mucin domain containing protein-3.
Sci Rep, 8, 2018
1SM3
DownloadVisualize
BU of 1sm3 by Molmil
CRYSTAL STRUCTURE OF THE TUMOR SPECIFIC ANTIBODY SM3 COMPLEX WITH ITS PEPTIDE EPITOPE
Descriptor: CADMIUM ION, CHLORIDE ION, PEPTIDE EPITOPE, ...
Authors:Dokurno, P, Bates, P.A, Band, H.A, Stewart, L.M.D, Lally, J.M, Burchell, J.M, Taylor-Papadimitriou, J, Sternberg, M.J.E, Snary, D, Freemont, P.S.
Deposit date:1997-12-23
Release date:1999-03-23
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure at 1.95 A resolution of the breast tumour-specific antibody SM3 complexed with its peptide epitope reveals novel hypervariable loop recognition.
J.Mol.Biol., 284, 1998
1SMO
DownloadVisualize
BU of 1smo by Molmil
Crystal Structure of Human Triggering Receptor Expressed on Myeloid Cells 1 (TREM-1) at 1.47 .
Descriptor: L(+)-TARTARIC ACID, triggering receptor expressed on myeloid cells 1
Authors:Kelker, M.S, Foss, T.R, Peti, W, Teyton, L, Kelly, J.W, Wilson, I.A.
Deposit date:2004-03-09
Release date:2004-09-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Crystal Structure of Human Triggering Receptor Expressed on Myeloid Cells 1 (TREM-1) at 1.47A.
J.Mol.Biol., 342, 2004
1T6W
DownloadVisualize
BU of 1t6w by Molmil
RATIONAL DESIGN OF A CALCIUM-BINDING ADHESION PROTEIN NMR, 20 STRUCTURES
Descriptor: CALCIUM ION, hypothetical protein XP_346638
Authors:Yang, W, Wilkins, A.L, Ye, Y, Liu, Z.-R, Urbauer, J.L, Kearney, A, van der Merwe, P.A, Yang, J.J.
Deposit date:2004-05-07
Release date:2005-02-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Design of a calcium-binding protein with desired structure in a cell adhesion molecule.
J.Am.Chem.Soc., 127, 2005
5UD8
DownloadVisualize
BU of 5ud8 by Molmil
Crystal Structure of Mutant Ig-like Domain
Descriptor: Triggering receptor expressed on myeloid cells 2
Authors:Sudom, A, Min, X, Wang, Z.
Deposit date:2016-12-23
Release date:2018-04-04
Last modified:2019-04-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular basis for the loss-of-function effects of the Alzheimer's disease-associated R47H variant of the immune receptor TREM2.
J. Biol. Chem., 293, 2018
5UD7
DownloadVisualize
BU of 5ud7 by Molmil
Crystal Structure of Wild-Type Ig-like Domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, IODIDE ION, SULFATE ION, ...
Authors:Sudom, A, Min, X, Wang, Z.
Deposit date:2016-12-23
Release date:2018-04-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.20002246 Å)
Cite:Molecular basis for the loss-of-function effects of the Alzheimer's disease-associated R47H variant of the immune receptor TREM2.
J. Biol. Chem., 293, 2018
5TRU
DownloadVisualize
BU of 5tru by Molmil
Structure of the first-in-class checkpoint inhibitor Ipilimumab bound to human CTLA-4
Descriptor: Cytotoxic T-lymphocyte protein 4, Ipilimumab Fab heavy chain, Ipilimumab Fab light chain
Authors:Ramagopal, U.A, Liu, W, Garrett-Thomson, S.C, Yan, Q, Srinivasan, M, Wong, S.C, Bell, A, Mankikar, S, Rangan, V.S, Deshpande, S, Bonanno, J.B, Korman, A.J, Almo, S.C.
Deposit date:2016-10-27
Release date:2017-05-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for cancer immunotherapy by the first-in-class checkpoint inhibitor ipilimumab.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
1TCR
DownloadVisualize
BU of 1tcr by Molmil
MURINE T-CELL ANTIGEN RECEPTOR 2C CLONE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Garcia, K.C, Degano, M, Stanfield, R.L, Wilson, I.A.
Deposit date:1996-09-12
Release date:1997-03-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:An alphabeta T cell receptor structure at 2.5 A and its orientation in the TCR-MHC complex.
Science, 274, 1996
1SVZ
DownloadVisualize
BU of 1svz by Molmil
Crystal structure of the single-chain Fv fragment 1696 in complex with the epitope peptide corresponding to N-terminus of HIV-2 protease
Descriptor: epitope peptide corresponding to N-terminus of HIV-2 protease, single-chain Fv fragment 1696
Authors:Rezacova, P, Brynda, J, Lescar, J, Bentley, G.A, Fabry, M, Horejsi, M, Sedlacek, J.
Deposit date:2004-03-30
Release date:2005-03-01
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal structure of a cross-reaction complex between an anti-HIV-1 protease antibody and an HIV-2 protease peptide
J.Struct.Biol., 149, 2005
1T2J
DownloadVisualize
BU of 1t2j by Molmil
Crystal structure of a Human VH domain
Descriptor: DI(HYDROXYETHYL)ETHER, M12-Variable Heavy domain
Authors:Gaur, R.K, Fischer, R, Hoffmann, K.M.V.
Deposit date:2004-04-21
Release date:2005-05-03
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of a human VH domain at 1.5 angstrom
To be Published
5V52
DownloadVisualize
BU of 5v52 by Molmil
Structure of TIGIT bound to nectin-2 (CD112)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Nectin-2, ...
Authors:Deuss, F.A, Gully, B.S, Rossjohn, J, Berry, R.
Deposit date:2017-03-13
Release date:2017-05-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Recognition of nectin-2 by the natural killer cell receptor T cell immunoglobulin and ITIM domain (TIGIT).
J. Biol. Chem., 292, 2017
1TVD
DownloadVisualize
BU of 1tvd by Molmil
VARIABLE DOMAIN OF T CELL RECEPTOR DELTA CHAIN
Descriptor: T CELL RECEPTOR
Authors:Li, H.M, Lebedeva, M.I, Llera, A.S, Fields, B.A, Brenner, M.B, Mariuzza, R.A.
Deposit date:1997-10-19
Release date:1998-04-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the Vdelta domain of a human gammadelta T-cell antigen receptor.
Nature, 391, 1998
1U9K
DownloadVisualize
BU of 1u9k by Molmil
Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (TREM-1) at 1.76
Descriptor: ZINC ION, triggering receptor expressed on myeloid cells 1
Authors:Kelker, M.S, Debler, E.W, Wilson, I.A.
Deposit date:2004-08-09
Release date:2004-12-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (TREM-1) at 1.76A
J.Mol.Biol., 344, 2004
1URL
DownloadVisualize
BU of 1url by Molmil
N-TERMINAL DOMAIN OF SIALOADHESIN (MOUSE) IN COMPLEX WITH GLYCOPEPTIDE
Descriptor: ALA-GLY-HIS-THR-TRP-GLY-HIA, N-acetyl-alpha-neuraminic acid, SIALOADHESIN
Authors:Bukrinsky, J.T, Hilaire, P.M.S, Meldal, M, Crocker, P.R, Henriksen, A.
Deposit date:2003-10-31
Release date:2004-10-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Complex of Sialoadhesin with a Glycopeptide Ligand
Biochim.Biophys.Acta, 1702, 2004
1VER
DownloadVisualize
BU of 1ver by Molmil
Structure of New Antigen Receptor variable domain from sharks
Descriptor: New Antigen Receptor variable domain
Authors:Streltsov, V.A.
Deposit date:2004-04-05
Release date:2004-08-24
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Structural evidence for evolution of shark Ig new antigen receptor variable domain antibodies from a cell-surface receptor
Proc.Natl.Acad.Sci.USA, 101, 2004
1VFA
DownloadVisualize
BU of 1vfa by Molmil
BOUND WATER MOLECULES AND CONFORMATIONAL STABILIZATION HELP MEDIATE AN ANTIGEN-ANTIBODY ASSOCIATION
Descriptor: IGG1-KAPPA D1.3 FV (HEAVY CHAIN), IGG1-KAPPA D1.3 FV (LIGHT CHAIN)
Authors:Bhat, T.N, Poljak, R.J.
Deposit date:1993-12-03
Release date:1994-05-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Bound water molecules and conformational stabilization help mediate an antigen-antibody association.
Proc.Natl.Acad.Sci.USA, 91, 1994
1VES
DownloadVisualize
BU of 1ves by Molmil
Structure of New Antigen Receptor variable domain from sharks
Descriptor: New Antigen Receptor variable domain
Authors:Streltsov, V.A.
Deposit date:2004-04-05
Release date:2004-08-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structural evidence for evolution of shark Ig new antigen receptor variable domain antibodies from a cell-surface receptor
Proc.Natl.Acad.Sci.USA, 101, 2004
2YWY
DownloadVisualize
BU of 2ywy by Molmil
Structure of new antigen receptor variable domain from sharks
Descriptor: new antigen receptor variable domain
Authors:Streltsov, V.A.
Deposit date:2007-04-23
Release date:2007-10-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Shark IgNAR antibody mimotopes target a murine immunoglobulin through extended CDR3 loop structures
Proteins, 71, 2007
2YWZ
DownloadVisualize
BU of 2ywz by Molmil
Structure of new antigen receptor variable domain from sharks
Descriptor: new antigen receptor variable domain
Authors:Streltsov, V.A.
Deposit date:2007-04-23
Release date:2007-10-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Shark IgNAR antibody mimotopes target a murine immunoglobulin through extended CDR3 loop structures
Proteins, 71, 2007
2YZ1
DownloadVisualize
BU of 2yz1 by Molmil
Crystal structure of the ligand-binding domain of murine SHPS-1/SIRP alpha
Descriptor: Tyrosine-protein phosphatase non-receptor type substrate 1
Authors:Nakaishi, A.
Deposit date:2007-05-02
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural insight into the specific interaction between murine SHPS-1/SIRP alpha and its ligand CD47
J.Mol.Biol., 375, 2008
2ZG2
DownloadVisualize
BU of 2zg2 by Molmil
Crystal Structure of Two N-terminal Domains of Native Siglec-5
Descriptor: Sialic acid-binding Ig-like lectin 5
Authors:Zhuravleva, M.A, Sun, P.D.
Deposit date:2008-01-17
Release date:2008-02-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural implications of Siglec-5-mediated sialoglycan recognition
J.Mol.Biol., 375, 2008
2Z35
DownloadVisualize
BU of 2z35 by Molmil
Crystal structure of immune receptor
Descriptor: T-cell receptor alpha-chain, T-cell receptor beta-chain
Authors:Feng, D, Bond, C.J, Ely, L.K, Garcia, K.C.
Deposit date:2007-06-01
Release date:2007-10-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural evidence for a germline-encoded T cell receptor-major histocompatibility complex interaction 'codon'
Nat.Immunol., 8, 2007
2ZG1
DownloadVisualize
BU of 2zg1 by Molmil
Crystal Structure of Two N-terminal Domains of Siglec-5 in Complex with 6'-Sialyllactose
Descriptor: N-acetyl-alpha-neuraminic acid, Sialic acid-binding Ig-like lectin 5
Authors:Zhuravleva, M.A, Sun, P.D.
Deposit date:2008-01-17
Release date:2008-02-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural implications of Siglec-5-mediated sialoglycan recognition
J.Mol.Biol., 375, 2008
2ZG3
DownloadVisualize
BU of 2zg3 by Molmil
Crystal Structure of Two N-terminal Domains of Native Siglec-5 in Complex with 3'-Sialyllactose
Descriptor: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, Sialic acid-binding Ig-like lectin 5
Authors:Zhuravleva, M.A, Sun, P.D.
Deposit date:2008-01-17
Release date:2008-02-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural implications of Siglec-5-mediated sialoglycan recognition
J.Mol.Biol., 375, 2008
3B5T
DownloadVisualize
BU of 3b5t by Molmil
Crystal Structure of Novel Immune-Type Receptor 10 Se-Met Extracellular Fragment Mutant N30D
Descriptor: Novel immune-type receptor 10
Authors:Ostrov, D.A, Hernandez Prada, J.A, Haire, R.N, Cannon, J.P, Magis, A.T, Bailey, K.M, Litman, G.W.
Deposit date:2007-10-26
Release date:2008-06-24
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A bony fish immunological receptor of the NITR multigene family mediates allogeneic recognition.
Immunity, 29, 2008

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon