Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 81 results

1QGT
DownloadVisualize
BU of 1qgt by Molmil
HUMAN HEPATITIS B VIRAL CAPSID (HBCAG)
Descriptor: PROTEIN (HBV CAPSID PROTEIN)
Authors:Leslie, A.G.W, Wynne, S.A, Crowther, R.A.
Deposit date:1999-05-05
Release date:1999-06-25
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The crystal structure of the human hepatitis B virus capsid.
Mol.Cell, 3, 1999
2QIJ
DownloadVisualize
BU of 2qij by Molmil
Hepatitis B Capsid Protein with an N-terminal extension modelled into 8.9 A data.
Descriptor: Core antigen
Authors:Tan, W.S, McNae, I.W, Ho, K.L, Walkinshaw, M.D.
Deposit date:2007-07-04
Release date:2007-12-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (8.9 Å)
Cite:Crystallization and X-ray analysis of the T = 4 particle of hepatitis B capsid protein with an N-terminal extension.
Acta Crystallogr.,Sect.F, 63, 2007
3KXS
DownloadVisualize
BU of 3kxs by Molmil
Crystal structure of HBV capsid mutant dimer (oxy form), strain adyw
Descriptor: Capsid protein
Authors:Packianathan, C, Katen, S.P, Zlotnick, A.
Deposit date:2009-12-03
Release date:2010-02-02
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Conformational changes in the hepatitis B virus core protein are consistent with a role for allostery in virus assembly
J.Virol., 84, 2010
5GMZ
DownloadVisualize
BU of 5gmz by Molmil
Hepatitis B virus core protein Y132A mutant in complex with 4-methyl heteroaryldihydropyrimidine
Descriptor: (2S)-4,4-difluoro-1-[[(4S)-4-(4-fluorophenyl)-5-methoxycarbonyl-4-methyl-2-(1,3-thiazol-2-yl)-1H-pyrimidin-6-yl]methyl]pyrrolidine-2-carboxylic acid, CHLORIDE ION, Core protein, ...
Authors:Xu, Z.H, Zhou, Z.
Deposit date:2016-07-18
Release date:2016-08-10
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Design and Synthesis of Orally Bioavailable 4-Methyl Heteroaryldihydropyrimidine Based Hepatitis B Virus (HBV) Capsid Inhibitors
J.Med.Chem., 59, 2016
4BMG
DownloadVisualize
BU of 4bmg by Molmil
Crystal structure of hexameric HBc149 Y132A
Descriptor: CAPSID PROTEIN
Authors:Juergens, M.C, Alexander, C.G, Shepherd, D.A, Ashcroft, A.E, Ferguson, N.
Deposit date:2013-05-08
Release date:2013-07-10
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:Thermodynamic Origins of Protein Folding, Allostery and Capsid Formation in the Human Hepatitis B Virus Core Protein
Proc.Natl.Acad.Sci.USA, 110, 2013
4G93
DownloadVisualize
BU of 4g93 by Molmil
CRYSTAL STRUCTURE OF THE HUMAN HEPATITIS B VIRUS T = 4 CAPSID, ADYW STRAIN, in COMPLEX WITH THE PHENYLPROPENAMIDE ASSEMBLY ACCELERATOR AT-130
Descriptor: Capsid protein, N-[(1E)-1-bromo-1-(2-methoxyphenyl)-3-oxo-3-(piperidin-1-yl)prop-1-en-2-yl]-4-nitrobenzamide
Authors:Katen, S.P, Zlotnick, A.
Deposit date:2012-07-23
Release date:2013-07-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Assembly-directed antivirals differentially bind quasiequivalent pockets to modify hepatitis B virus capsid tertiary and quaternary structure.
Structure, 21, 2013
6J10
DownloadVisualize
BU of 6j10 by Molmil
Ciclopirox inhibits Hepatitis B Virus secretion by blocking capsid assembly
Descriptor: 6-cyclohexyl-4-methyl-1-oxidanyl-pyridin-2-one, Capsid protein
Authors:Park, S, Jin, M.S, Cho, Y, Kang, J, Kim, S, Park, M, Park, H, Kim, J, Park, S, Hwang, J, Kim, Y, Kim, Y.J.
Deposit date:2018-12-27
Release date:2019-04-17
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Ciclopirox inhibits Hepatitis B Virus secretion by blocking capsid assembly.
Nat Commun, 10, 2019
7S76
DownloadVisualize
BU of 7s76 by Molmil
HBV CAPSID Y132A WITH COMPOUND 10b AT 2.5A RESOLUTION
Descriptor: (1-methyl-1H-1,2,4-triazol-3-yl)methyl {(4S)-1-[(3-chloro-4-fluorophenyl)carbamoyl]-2-methyl-2,4,5,6-tetrahydrocyclopenta[c]pyrrol-4-yl}carbamate, Capsid protein
Authors:Olland, A.M, Suto, R.K.
Deposit date:2021-09-15
Release date:2022-05-04
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The identification of highly efficacious functionalised tetrahydrocyclopenta[ c ]pyrroles as inhibitors of HBV viral replication through modulation of HBV capsid assembly.
Rsc Med Chem, 13, 2022
3V6Z
DownloadVisualize
BU of 3v6z by Molmil
Crystal Structure of Hepatitis B Virus e-antigen
Descriptor: Fab e6 Heavy Chain, Fab e6 Light Chain, e-antigen
Authors:Dimattia, M.A, Watts, N.R, Stahl, S.J, Grimes, J.M, Steven, A.C, Stuart, D.I, Wingfield, P.T.
Deposit date:2011-12-20
Release date:2013-02-06
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.34 Å)
Cite:Antigenic switching of hepatitis B virus by alternative dimerization of the capsid protein.
Structure, 21, 2013
8KHU
DownloadVisualize
BU of 8khu by Molmil
Hepatitis B virus core protein Y132A mutant in complex with THPP derivatives 48
Descriptor: (6~{S},7~{R})-6,7-dimethyl-3-(2-oxidanylidenepyrrolidin-1-yl)-~{N}-[3,4,5-tris(fluoranyl)phenyl]-6,7-dihydro-4~{H}-pyrazolo[1,5-a]pyrazine-5-carboxamide, Capsid protein, GLYCEROL, ...
Authors:Zhou, Z, Xu, Z.H.
Deposit date:2023-08-22
Release date:2023-10-25
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery of 4,5,6,7-Tetrahydropyrazolo[1.5-a]pyrizine Derivatives as Core Protein Allosteric Modulators (CpAMs) for the Inhibition of Hepatitis B Virus.
J.Med.Chem., 66, 2023
7K5M
DownloadVisualize
BU of 7k5m by Molmil
CRYSTAL STRUCTURE OF HBV CAPSID Y132A MUTANT IN COMPLEX WITH N-(3-chloro-4-fluorophenyl)-3-phenyl-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carboxamide AT 2.65A RESOLUTION
Descriptor: Capsid protein, ISOPROPYL ALCOHOL, N-(3-chloro-4-fluorophenyl)-3-phenyl-2,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carboxamide
Authors:Kuduk, S.D, Stoops, B, Alexander, R, Lam, A.M, Espiritu, C, Vogel, R, Lau, V, Klumpp, K, Flores, O.A, Hartman, G.D, Lukacs, C.M, Abendroth, J.
Deposit date:2020-09-17
Release date:2021-07-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Identification of a new class of HBV capsid assembly modulator.
Bioorg.Med.Chem.Lett., 39, 2021
7ABL
DownloadVisualize
BU of 7abl by Molmil
HBV pgRNA T=4 NCP icosahedral symmetry
Descriptor: Capsid protein
Authors:Patel, N, Clark, S, Weis, E.U, Mata, C.P, Bohon, J, Farquhar, E, Ranson, N.A, Twarock, R, Stockley, P.G.
Deposit date:2020-09-07
Release date:2021-10-27
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:In vitro functional analysis of gRNA sites regulating assembly of hepatitis B virus.
Commun Biol, 4, 2021
5T2P
DownloadVisualize
BU of 5t2p by Molmil
Hepatitis B virus core protein Y132A mutant in complex with sulfamoylbenzamide (SBA_R01)
Descriptor: 4-fluoranyl-3-(4-oxidanylpiperidin-1-yl)sulfonyl-~{N}-[3,4,5-tris(fluoranyl)phenyl]benzamide, CHLORIDE ION, Core protein, ...
Authors:Zhou, Z, Xu, Z.H.
Deposit date:2016-08-24
Release date:2017-02-22
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.693 Å)
Cite:Heteroaryldihydropyrimidine (HAP) and Sulfamoylbenzamide (SBA) Inhibit Hepatitis B Virus Replication by Different Molecular Mechanisms.
Sci Rep, 7, 2017
3J2V
DownloadVisualize
BU of 3j2v by Molmil
CryoEM structure of HBV core
Descriptor: PreC/core protein
Authors:Yu, X, Jin, L, Jih, J, Shih, C, Zhou, Z.H.
Deposit date:2013-01-11
Release date:2013-10-02
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:3.5 angstrom cryoEM Structure of Hepatitis B Virus Core Assembled from Full-Length Core Protein.
Plos One, 8, 2013
8BDZ
DownloadVisualize
BU of 8bdz by Molmil
Hepatitis B virus core antigen (HBc) with the insertion of four external domains of the influenza A M2 protein (HBc/4M2e) with T=4 topology
Descriptor: Core protein,Matrix protein 2,External core antigen
Authors:Egorov, V.V, Shvetsov, A.V, Pichkur, E.B, Shaldzhyan, A.A, Zabrodskaya, Y.A, Vinogradova, D.S, Nekrasov, P.A, Gorshkov, A.N, Garmay, Y.P, Kovaleva, A.A, Stepanova, L.A, Tsybalova, L.M, Shtam, T.A, Myasnikov, A.G, Konevega, A.L.
Deposit date:2022-10-20
Release date:2022-12-28
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Inside and outside of virus-like particles HBc and HBc/4M2e: A comprehensive study of the structure.
Biophys.Chem., 293, 2022
8BER
DownloadVisualize
BU of 8ber by Molmil
Hepatitis B virus core antigen (HBc) with the insertion of four external domains of the influenza A M2 protein (HBc/4M2e) with T=3 topology
Descriptor: Core protein,Matrix protein 2,External core antigen
Authors:Egorov, V.V, Shvetsov, A.V, Pichkur, E.B, Shaldzhyan, A.A, Zabrodskaya, Y.A, Vinogradova, D.S, Nekrasov, P.A, Gorshkov, A.N, Garmay, Y.P, Kovaleva, A.A, Stepanova, L.A, Tsybalova, L.M, Shtam, T.A, Myasnikov, A.G, Konevega, A.L.
Deposit date:2022-10-21
Release date:2022-12-28
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Inside and outside of virus-like particles HBc and HBc/4M2e: A comprehensive study of the structure.
Biophys.Chem., 293, 2022
6YGI
DownloadVisualize
BU of 6ygi by Molmil
Duck hepatitis B virus capsid Mutant R124E_delta78-122
Descriptor: Capsid protein,Capsid protein
Authors:Makbul, C, Bottcher, B.
Deposit date:2020-03-27
Release date:2020-09-02
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Slowly folding surface extension in the prototypic avian hepatitis B virus capsid governs stability.
Elife, 9, 2020
5E0I
DownloadVisualize
BU of 5e0i by Molmil
Crystal structure of the HBV capsid Y132A mutant (VCID 8772) in complex with NVR10-001E2 at 1.95A resolution
Descriptor: Capsid protein, methyl 4-(2-bromo-4-fluorophenyl)-6-(morpholin-4-ylmethyl)-2-(1,3-thiazol-2-yl)pyrimidine-5-carboxylate
Authors:Lukacs, C.M, Abendroth, J, Klumpp, K.
Deposit date:2015-09-28
Release date:2015-12-09
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:High-resolution crystal structure of a hepatitis B virus replication inhibitor bound to the viral core protein.
Proc.Natl.Acad.Sci.USA, 112, 2015
6YGH
DownloadVisualize
BU of 6ygh by Molmil
Duck hepatitis B virus capsid
Descriptor: Capsid protein
Authors:Makbul, C, Bottcher, B.
Deposit date:2020-03-27
Release date:2020-09-02
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Slowly folding surface extension in the prototypic avian hepatitis B virus capsid governs stability.
Elife, 9, 2020
2G33
DownloadVisualize
BU of 2g33 by Molmil
Human Hepatitis B Virus T=4 capsid, strain adyw
Descriptor: Core antigen
Authors:Bourne, C.R, Zlotnick, A.
Deposit date:2006-02-17
Release date:2006-11-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.96 Å)
Cite:Global Structural Changes in Hepatitis B Virus Capsids Induced by the Assembly Effector HAP1.
J.Virol., 80, 2006
5WTW
DownloadVisualize
BU of 5wtw by Molmil
Hepatitis B virus core protein Y132A mutant in P 41 21 2 Space Group
Descriptor: CHLORIDE ION, Core protein
Authors:Zhou, Z, Xu, Z.H.
Deposit date:2016-12-15
Release date:2017-02-22
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.623 Å)
Cite:Heteroaryldihydropyrimidine (HAP) and Sulfamoylbenzamide (SBA) Inhibit Hepatitis B Virus Replication by Different Molecular Mechanisms.
Sci Rep, 7, 2017
2G34
DownloadVisualize
BU of 2g34 by Molmil
Human hepatitis B virus T=4 capsid strain adyw complexed with assembly effector HAP1
Descriptor: Core antigen
Authors:Bourne, C.R, Zlotnick, A.
Deposit date:2006-02-17
Release date:2006-11-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (5.053 Å)
Cite:Global Structural Changes in Hepatitis B Virus Capsids Induced by the Assembly Effector HAP1.
J.Virol., 80, 2006
5WRE
DownloadVisualize
BU of 5wre by Molmil
Hepatitis B virus core protein Y132A mutant in complex with heteroaryldihydropyrimidine (HAP_R01)
Descriptor: (2S)-1-[[(4R)-4-(2-chloranyl-4-fluoranyl-phenyl)-5-methoxycarbonyl-2-(1,3-thiazol-2-yl)-1,4-dihydropyrimidin-6-yl]methyl]-4,4-bis(fluoranyl)pyrrolidine-2-carboxylic acid, CHLORIDE ION, Core protein, ...
Authors:Zhou, Z, Xu, Z.H.
Deposit date:2016-12-01
Release date:2017-02-22
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.946 Å)
Cite:Heteroaryldihydropyrimidine (HAP) and Sulfamoylbenzamide (SBA) Inhibit Hepatitis B Virus Replication by Different Molecular Mechanisms.
Sci Rep, 7, 2017
5D7Y
DownloadVisualize
BU of 5d7y by Molmil
Crystal structure of Hepatitis B virus T=4 capsid in complex with the allosteric modulator HAP18
Descriptor: Capsid protein, methyl (4R)-4-(2-chloro-4-fluorophenyl)-6-{[4-(3-hydroxypenta-1,4-diyn-3-yl)piperidin-1-yl]methyl}-2-(pyridin-2-yl)-1,4-dihydropyrimidine-5-carboxylate
Authors:Venkatakrishnan, B, Katen, S.P, Zlotnick, A.
Deposit date:2015-08-14
Release date:2016-02-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.894 Å)
Cite:Hepatitis B Virus Capsids Have Diverse Structural Responses to Small-Molecule Ligands Bound to the Heteroaryldihydropyrimidine Pocket.
J.Virol., 90, 2016
8PX3
DownloadVisualize
BU of 8px3 by Molmil
Hepatitis B core protein with bound P1dC
Descriptor: External core antigen, P1dC
Authors:Makbul, C, Khayenko, V, Maric, M.H, Bottcher, B.
Deposit date:2023-07-22
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Peptide dimers aggregate Hepatitis B core proteins in live cells
To Be Published

 

1234>

237423

PDB entries from 2025-06-11

PDB statisticsPDBj update infoContact PDBjnumon