PDB: 13252 resultsInfo pagesStatus searchChemie searchBIRD

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2ZZM	The complex structure of aTrm5 and tRNALeu Descriptor: MAGNESIUM ION, RNA (84-MER), S-ADENOSYLMETHIONINE, ... Authors: Goto-Ito, S, Ito, T, Yokoyama, S. Deposit date: 2009-02-19 Release date: 2009-09-15 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation Nat.Struct.Mol.Biol., 16, 2009
8OHM	CRYSTAL STRUCTURE OF RNA HELICASE FROM GENOTYPE 1B HEPATITIS C VIRUS: MECHANISM OF UNWINDING DUPLEX RNA Descriptor: RNA HELICASE Authors: Cho, H.S, Ha, N.C, Kang, L.W, Oh, B.H. Deposit date: 1998-03-13 Release date: 1999-04-20 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structure of RNA helicase from genotype 1b hepatitis C virus. A feasible mechanism of unwinding duplex RNA. J.Biol.Chem., 273, 1998
6BG9	HYBRID NMR/CRYO-EM STRUCTURE OF THE HIV-1 RNA DIMERIZATION SIGNAL Descriptor: RNA dimerization signal Authors: Summers, M.F. Deposit date: 2017-10-27 Release date: 2018-02-21 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (9 Å), SOLUTION NMR Cite: Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach. Structure, 26, 2018
6EZ4	NMR structure of the C-terminal domain of the human RPAP3 protein Descriptor: RNA polymerase II-associated protein 3 Authors: Fabre, P, Chagot, M.E, Bragantini, B, Manival, X, Quinternet, M. Deposit date: 2017-11-14 Release date: 2018-04-18 Last modified: 2024-01-17 Method: SOLUTION NMR Cite: The RPAP3-Cterminal domain identifies R2TP-like quaternary chaperones. Nat Commun, 9, 2018
2U2A	STEM LOOP IIA FROM U2 SNRNA OF SACCHAROMYCES CEREVISIAE, NMR, MINIMIZED AVERAGE STRUCTURE Descriptor: RNA (5'-R(P*GP*GP*UP*CP*AP*GP*UP*GP*UP*AP*AP*CP*AP*AP*CP*UP*GP*AP*CP*C)-3') Authors: Stallings, S.C, Moore, P.B. Deposit date: 1997-08-20 Release date: 1998-03-04 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: The structure of an essential splicing element: stem loop IIa from yeast U2 snRNA. Structure, 5, 1997
6ZBK	Crystal structure of the human complex between RPAP3 and TRBP Descriptor: RISC-loading complex subunit TARBP2, RNA polymerase II-associated protein 3 Authors: Charron, C, Abel, Y, Charpentier, B, Rederstorff, M. Deposit date: 2020-06-08 Release date: 2021-06-30 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.49 Å) Cite: The interaction between RPAP3 and TRBP reveals a possible involvement of the HSP90/R2TP chaperone complex in the regulation of miRNA activity. Nucleic Acids Res., 50, 2022
2LHP	High resolution NMR solution structure of helix H1 of the chimpanzee HAR1 RNA Descriptor: RNA (37-MER) Authors: Cevec, M, Ziegeler, M, Richter, C, Schwalbe, H. Deposit date: 2011-08-12 Release date: 2012-07-25 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: NMR Studies of HAR1 RNA Secondary Structures Reveal Conformational Dynamics in the Human RNA. Chembiochem, 13, 2012
2LUB	High resolution NMR solution structure of helix H1 of the human HAR1 RNA Descriptor: RNA (37-MER) Authors: Cevec, M, Ziegeler, M, Richter, C, Schwalbe, H. Deposit date: 2012-06-11 Release date: 2012-07-25 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: NMR Studies of HAR1 RNA Secondary Structures Reveal Conformational Dynamics in the Human RNA. Chembiochem, 13, 2012
2JWV	Structure of a high affinity anti-NFkB RNA aptamer Descriptor: RNA (29-MER) Authors: Reiter, N.J, Maher III, L, Butcher, S.E. Deposit date: 2007-10-25 Release date: 2008-01-08 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: DNA mimicry by a high-affinity anti-NF-kappaB RNA aptamer Nucleic Acids Res., 36, 2008
280D	THE STRUCTURE OF AN RNA DODECAMER SHOWS HOW TANDEM U-U BASE PAIRS INCREASE THE RANGE OF STABLE RNA STRUCTURES AND THE DIVERSITY OF RECOGNITION SITES Descriptor: RNA (5'-R(*GP*GP*CP*GP*CP*UP*UP*GP*CP*GP*UP*C)-3') Authors: Lietzke, S.E, Barnes, C.L, Kundrot, C.E. Deposit date: 1996-08-22 Release date: 1996-09-30 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.4 Å) Cite: The structure of an RNA dodecamer shows how tandem U-U base pairs increase the range of stable RNA structures and the diversity of recognition sites. Structure, 4, 1996
4PTF	Ternary crystal structure of yeast DNA polymerase epsilon with template G Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3', ... Authors: Jain, R, Rajashankar, K.R, Buku, A, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K. Deposit date: 2014-03-10 Release date: 2014-04-30 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.809 Å) Cite: Crystal Structure of Yeast DNA Polymerase epsilon Catalytic Domain. Plos One, 9, 2014
2RVO	Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish Descriptor: RNA (34-MER) Authors: Otsu, M, Norose, N, Arai, N, Terao, R, Kajikawa, M, Okada, N, Kawai, G. Deposit date: 2016-02-03 Release date: 2017-02-08 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish. J. Biochem., 162, 2017
2L1F	Structure of a conserved retroviral RNA packaging element by NMR spectroscopy and cryo-electron tomography Descriptor: RNA (65-MER), RNA (66-MER) Authors: Summers, M.F, Irobalieva, R.N, Tolbert, B, Smalls-Manty, A, Iyalla, K, Loeliger, K, D'Souza, V, Khant, H, Schmid, M, Garcia, E, Telesnitsky, A, Chiu, W, Miyazaki, Y. Deposit date: 2010-07-28 Release date: 2010-10-27 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structure of a conserved retroviral RNA packaging element by NMR spectroscopy and cryo-electron tomography. J.Mol.Biol., 404, 2010
2OOM	NMR structure of a kissing complex formed between the TAR RNA element of HIV-1 and a LNA/RNA aptamer Descriptor: RNA 16-mer, TAR RNA element of HIV-1 Authors: Lebars, I, Richard, T, Di Primo, C, Toulme, J.J. Deposit date: 2007-01-26 Release date: 2008-01-29 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: NMR structure of a kissing complex formed between the TAR RNA element of HIV-1 and a LNA-modified aptamer Nucleic Acids Res., 35, 2007
8HVR	Cryo-EM structure of AfsR-dependent transcription activation complex with afsS promoter Descriptor: DNA (65-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Wang, Y, Zheng, J. Deposit date: 2022-12-27 Release date: 2023-12-27 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (3.35 Å) Cite: Structural and functional characterization of AfsR, an SARP family transcriptional activator of antibiotic biosynthesis in Streptomyces. Plos Biol., 22, 2024
2VQZ	Structure of the cap-binding domain of influenza virus polymerase subunit PB2 with bound m7GTP Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE, POLYMERASE BASIC PROTEIN 2 Authors: Guilligay, D, Tarendeau, F, Resa-Infante, P, Coloma, R, Crepin, T, Sehr, P, Lewis, J, Ruigrok, R.W.H, Ortin, J, Hart, D.J, Cusack, S. Deposit date: 2008-03-21 Release date: 2008-05-13 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The Structural Basis for CAP Binding by Influenza Virus Polymerase Subunit Pb2. Nat.Struct.Mol.Biol., 15, 2008
6VZ2	Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (10 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VYU	Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (7 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VYY	Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (9.9 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VYW	Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (7 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VYX	Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (9.9 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VZ7	Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (7 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VYS	Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VYQ	Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
2J04	The tau60-tau91 subcomplex of yeast transcription factor IIIC Descriptor: HYPOTHETICAL PROTEIN YPL007C, YDR362CP Authors: Mylona, A, Fernandez-Tornero, C, Legrand, P, Muller, C.W. Deposit date: 2006-07-31 Release date: 2006-10-23 Last modified: 2019-04-03 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structure of the Tau60/Deltatau91 Subcomplex of Yeast Transcription Factor Iiic: Insights Into Preinitiation Complex Assembly Mol.Cell, 24, 2006

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