Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2M8T
DownloadVisualize
BU of 2m8t by Molmil
Solution NMR structure of the V209M variant of the human prion protein (residues 90-231)
Descriptor: Major prion protein
Authors:Mills, J.L, Surewicz, K, Surewicz, W, Soennichsen, F.D.
Deposit date:2013-05-28
Release date:2013-09-11
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Thermodynamic Stabilization of the Folded Domain of Prion Protein Inhibits Prion Infection in Vivo.
Cell Rep, 4, 2013
4WBU
DownloadVisualize
BU of 4wbu by Molmil
prion peptide
Descriptor: PrP peptide
Authors:Yu, L, Lee, S.-J, Yee, V.
Deposit date:2014-09-03
Release date:2015-05-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Crystal Structures of Polymorphic Prion Protein beta 1 Peptides Reveal Variable Steric Zipper Conformations.
Biochemistry, 54, 2015
4V6B
DownloadVisualize
BU of 4v6b by Molmil
Crystal structure of human ferritin Phe167SerfsX26 mutant.
Descriptor: CALCIUM ION, Ferritin
Authors:Hurley, T.D, Vidal, R.
Deposit date:2009-06-19
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Unraveling of the E-helices and disruption of 4-fold pores are associated with iron mishandling in a mutant ferritin causing neurodegeneration
J.Biol.Chem., 285, 2010
4V7G
DownloadVisualize
BU of 4v7g by Molmil
Crystal Structure of Lumazine Synthase from Bacillus Anthracis
Descriptor: 6,7-dimethyl-8-ribityllumazine synthase, PHOSPHATE ION
Authors:Morgunova, E, Illarionov, B, Saller, S, Popov, A, Sambaiah, T, Bacher, A, Cushman, M, Fischer, M, Ladenstein, R.
Deposit date:2009-09-16
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural study and thermodynamic characterization of inhibitor binding to lumazine synthase from Bacillus anthracis.
Acta Crystallogr.,Sect.D, 66, 2010
4V7P
DownloadVisualize
BU of 4v7p by Molmil
Recognition of the amber stop codon by release factor RF1.
Descriptor: 16S rRNA (1504-MER), 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Korostelev, A, Zhu, J, Asahara, H, Noller, H.F.
Deposit date:2010-04-29
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.62 Å)
Cite:Recognition of the amber UAG stop codon by release factor RF1.
Embo J., 29, 2010
4V88
DownloadVisualize
BU of 4v88 by Molmil
The structure of the eukaryotic ribosome at 3.0 A resolution.
Descriptor: 18S RIBOSOMAL RNA, 18S rRNA, 25S rRNA, ...
Authors:Ben-Shem, A, Garreau de Loubresse, N, Melnikov, S, Jenner, L, Yusupova, G, Yusupov, M.
Deposit date:2011-10-11
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:The structure of the eukaryotic ribosome at 3.0 angstrom resolution.
Science, 334, 2011
4V99
DownloadVisualize
BU of 4v99 by Molmil
The Crystallographic Structure of Panicum Mosaic Virus
Descriptor: 5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3', CALCIUM ION, Capsid protein
Authors:Makino, D.L, Larson, S.B, McPherson, A.
Deposit date:2012-07-04
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The crystallographic structure of Panicum Mosaic Virus (PMV).
J.Struct.Biol., 181, 2013
4V4H
DownloadVisualize
BU of 4v4h by Molmil
Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.
Descriptor: (1S,2R,3S,4R,5S,6S)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL 2-AMINO-4-{[CARBOXY(IMINO)METHYL]AMINO}-2,3,4,6-TETRADEOXY-ALPHA-D-ARABINO-HEXOPYRANOSIDE, 16S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, ...
Authors:Schuwirth, B.S, Vila-Sanjurjo, A, Cate, J.H.D.
Deposit date:2006-08-04
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.46 Å)
Cite:Structural analysis of kasugamycin inhibition of translation.
Nat.Struct.Mol.Biol., 13, 2006
4W5P
DownloadVisualize
BU of 4w5p by Molmil
Prp peptide
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, PrP peptide
Authors:Yu, L, Lee, S.-J, Yee, V.
Deposit date:2014-08-18
Release date:2015-05-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.151 Å)
Cite:Crystal Structures of Polymorphic Prion Protein beta 1 Peptides Reveal Variable Steric Zipper Conformations.
Biochemistry, 54, 2015
4W67
DownloadVisualize
BU of 4w67 by Molmil
Crystal structure of Prp peptide
Descriptor: PrP peptide
Authors:Yu, L, Lee, S.-J, Yee, V.
Deposit date:2014-08-20
Release date:2015-05-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.001 Å)
Cite:Crystal Structures of Polymorphic Prion Protein beta 1 Peptides Reveal Variable Steric Zipper Conformations.
Biochemistry, 54, 2015
4V46
DownloadVisualize
BU of 4v46 by Molmil
Crystal structure of the BAFF-BAFF-R complex
Descriptor: MAGNESIUM ION, Tumor necrosis factor ligand superfamily member 13B, Tumor necrosis factor receptor superfamily member 13C
Authors:Kim, H.M, Yu, K.S, Lee, M.E, Shin, D.R, Kim, Y.S, Paik, S.G, Yoo, O.J, Lee, H, Lee, J.-O.
Deposit date:2003-03-23
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal structure of the BAFF-BAFF-R complex and its implications for receptor activation
NAT.STRUCT.BIOL., 10, 2003
4V5D
DownloadVisualize
BU of 4v5d by Molmil
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
Descriptor: 16S ribosomal RNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Voorhees, R.M, Weixlbaumer, A, Loakes, D, Kelley, A.C, Ramakrishnan, V.
Deposit date:2009-03-24
Release date:2014-07-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome.
Nat. Struct. Mol. Biol., 16, 2009
4V57
DownloadVisualize
BU of 4v57 by Molmil
Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Borovinskaya, M.A, Shoji, S, Holton, J.M, Fredrick, K, Cate, J.H.D.
Deposit date:2007-07-21
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:A steric block in translation caused by the antibiotic spectinomycin.
Acs Chem.Biol., 2, 2007
4V67
DownloadVisualize
BU of 4v67 by Molmil
Crystal structure of a translation termination complex formed with release factor RF2.
Descriptor: 16S RRNA, 23S RRNA, 30S ribosomal protein S10, ...
Authors:Korostelev, A, Asahara, H, Lancaster, L, Laurberg, M, Hirschi, A, Noller, H.F.
Deposit date:2008-10-27
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of a translation termination complex formed with release factor RF2.
Proc.Natl.Acad.Sci.USA, 105, 2008
4V7M
DownloadVisualize
BU of 4v7m by Molmil
The structures of Capreomycin bound to the 70S ribosome.
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Stanley, R.E, Blaha, G.
Deposit date:2009-11-12
Release date:2014-07-09
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:The structures of the anti-tuberculosis antibiotics viomycin and capreomycin bound to the 70S ribosome.
Nat.Struct.Mol.Biol., 17, 2010
4V85
DownloadVisualize
BU of 4v85 by Molmil
Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Zhou, J, Lancaster, L, Trakhanov, S, Noller, H.F.
Deposit date:2011-06-13
Release date:2014-07-09
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome.
Rna, 18, 2012
4V8I
DownloadVisualize
BU of 4v8i by Molmil
Crystal structure of YfiA bound to the 70S ribosome.
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S10, ...
Authors:Polikanov, Y.S, Blaha, G.M, Steitz, T.A.
Deposit date:2011-12-12
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:How hibernation factors RMF, HPF, and YfiA turn off protein synthesis.
Science, 336, 2012
4V98
DownloadVisualize
BU of 4v98 by Molmil
The 8S snRNP Assembly Intermediate
Descriptor: CG10419, Icln, LD23602p, ...
Authors:Grimm, C, Pelz, J.P, Schindelin, H, Diederichs, K, Kuper, J, Kisker, C.
Deposit date:2012-05-15
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural Basis of Assembly Chaperone- Mediated snRNP Formation.
Mol.Cell, 49, 2013
4V5X
DownloadVisualize
BU of 4v5x by Molmil
The cryo-EM structure of a 3D DNA-origami object
Descriptor: SCAFFOLD STRAND,SCAFFOLD STRAND, STAPLE STRAND
Authors:Bai, X.C, Martin, T.G, Scheres, S.H.W, Dietz, H.
Deposit date:2012-10-09
Release date:2014-07-09
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (11.5 Å)
Cite:Cryo-Em Structure of a 3D DNA-Origami Object.
Proc.Natl.Acad.Sci.USA, 109, 2012
4V9H
DownloadVisualize
BU of 4v9h by Molmil
Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Tourigny, D.S, Fernandez, I.S, Kelley, A.C, Ramakrishnan, V.
Deposit date:2013-03-25
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (2.857 Å)
Cite:Elongation factor G bound to the ribosome in an intermediate state of translocation.
Science, 340, 2013
4V9R
DownloadVisualize
BU of 4v9r by Molmil
Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S10, ...
Authors:Bulkley, D.P, Brandi, L, Polikanov, Y.S, Fabbretti, A, O'Connor, M, Gualerzi, C.O, Steitz, T.A.
Deposit date:2013-12-05
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3 Å)
Cite:The antibiotics dityromycin and GE82832 bind protein S12 and block EF-G-catalyzed translocation.
Cell Rep, 6, 2014
7U64
DownloadVisualize
BU of 7u64 by Molmil
Crystal Structure of Anti-Fentanyl Antibody HY6-F9.6 Fab Complexed with Fentanyl
Descriptor: ACETATE ION, HY6-F9.6 Fab heavy chain, HY6-F9.6 Fab light chain, ...
Authors:Rodarte, J.V, Pancera, M.P.
Deposit date:2022-03-03
Release date:2023-01-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structures of drug-specific monoclonal antibodies bound to opioids and nicotine reveal a common mode of binding.
Structure, 31, 2023
4V5C
DownloadVisualize
BU of 4v5c by Molmil
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
Descriptor: 16S ribosomal RNA, 23S Ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Voorhees, R.M, Weixlbaumer, A, Loakes, D, Kelley, A.C, Ramakrishnan, V.
Deposit date:2009-03-24
Release date:2014-07-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Insights Into Substrate Stabilization from Snapshots of the Peptidyl Transferase Center of the Intact 70S Ribosome
Nat.Struct.Mol.Biol., 16, 2009
4V8K
DownloadVisualize
BU of 4v8k by Molmil
Crystal structure of the LH1-RC complex from Thermochromatium tepidum in P21 form
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CALCIUM ION, ...
Authors:Niwa, S, Takeda, K, Wang-Otomo, Z.-Y, Miki, K.
Deposit date:2013-11-22
Release date:2014-07-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.006 Å)
Cite:Structure of the LH1-RC complex from Thermochromatium tepidum at 3.0 angstrom
Nature, 508, 2014
4V5R
DownloadVisualize
BU of 4v5r by Molmil
The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.
Descriptor: 16S RRNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Schmeing, T.M, Voorhees, R.M, Ramakrishnan, V.
Deposit date:2010-12-07
Release date:2014-07-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:How Mutations in tRNA Distant from the Anticodon Affect the Fidelity of Decoding.
Nat.Struct.Mol.Biol., 18, 2011

221716

數據於2024-06-26公開中

PDB statisticsPDBj update infoContact PDBjnumon