Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5JFR
DownloadVisualize
BU of 5jfr by Molmil
Potent, Reversible MetAP2 Inhibitors via Fragment Based Drug Discovery
Descriptor: 1,2-ETHANEDIOL, 7-fluoro-4-(5-methyl-3H-imidazo[4,5-b]pyridin-6-yl)-2,4-dihydropyrazolo[4,3-b]indole, DIMETHYL SULFOXIDE, ...
Authors:Dougan, D.R, Lawson, J.D.
Deposit date:2016-04-19
Release date:2016-05-25
Last modified:2016-06-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Discovery of potent, reversible MetAP2 inhibitors via fragment based drug discovery and structure based drug design-Part 2.
Bioorg.Med.Chem.Lett., 26, 2016
5SWZ
DownloadVisualize
BU of 5swz by Molmil
Crystal Structure of NP1-B17 TCR-H2Db-NP complex
Descriptor: Beta-2-microglobulin, H-2 class I histocompatibility antigen, D-B alpha chain, ...
Authors:Gras, S, Del Campo, C.M, Farenc, C, Josephs, T.M, Rossjohn, J.
Deposit date:2016-08-09
Release date:2016-10-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Reversed T Cell Receptor Docking on a Major Histocompatibility Class I Complex Limits Involvement in the Immune Response.
Immunity, 45, 2016
1KA6
DownloadVisualize
BU of 1ka6 by Molmil
SAP/SH2D1A bound to peptide n-pY
Descriptor: SH2 DOMAIN PROTEIN 1A, peptide n-pY
Authors:Hwang, P.M, Li, C, Morra, M, Lillywhite, J, Gertler, F, Terhorst, C, Kay, L.E, Pawson, T, Forman-Kay, J, Li, S.-C.
Deposit date:2001-10-31
Release date:2001-11-07
Last modified:2021-10-27
Method:SOLUTION NMR
Cite:A "three-pronged" binding mechanism for the SAP/SH2D1A SH2 domain: structural basis and relevance to the XLP syndrome.
EMBO J., 21, 2002
5SZZ
DownloadVisualize
BU of 5szz by Molmil
Novel Structural Insights into GDP-Mediated Regulation of Acyl-CoA Thioesterases
Descriptor: Acyl-CoA hydrolase, CHLORIDE ION, COENZYME A, ...
Authors:Khandokar, Y.B, Srivastava, P, Forwood, J.K.
Deposit date:2016-08-15
Release date:2016-09-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insights into GDP-mediated regulation of a bacterial acyl-CoA thioesterase.
J. Biol. Chem., 292, 2017
5IVJ
DownloadVisualize
BU of 5ivj by Molmil
Linked KDM5A Jmj Domain Bound to the Inhibitor N11 [3-({1-[2-(4,4-difluoropiperidin-1-yl)ethyl]-5-fluoro-1H-indazol-3-yl}amino)pyridine-4-carboxylic acid]
Descriptor: 3-({1-[2-(4,4-difluoropiperidin-1-yl)ethyl]-5-fluoro-1H-indazol-3-yl}amino)pyridine-4-carboxylic acid, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Horton, J.R, Cheng, X.
Deposit date:2016-03-21
Release date:2016-07-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.569 Å)
Cite:Structural Basis for KDM5A Histone Lysine Demethylase Inhibition by Diverse Compounds.
Cell Chem Biol, 23, 2016
5SWS
DownloadVisualize
BU of 5sws by Molmil
Crystal Structure of NP2-B17 TCR-H2Db-NP complex
Descriptor: Beta-2-microglobulin, H-2 class I histocompatibility antigen, D-B alpha chain, ...
Authors:Gras, S, Del Campo, C.M, Farenc, C, Josephs, T.M, Rossjohn, J.
Deposit date:2016-08-08
Release date:2016-10-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Reversed T Cell Receptor Docking on a Major Histocompatibility Class I Complex Limits Involvement in the Immune Response.
Immunity, 45, 2016
5ITX
DownloadVisualize
BU of 5itx by Molmil
Crystal Structure of Human NEIL1(P2G R242K) bound to duplex DNA containing Thymine Glycol
Descriptor: DNA (26-MER), Endonuclease 8-like 1
Authors:Zhu, C, Lu, L, Zhang, J, Yue, Z, Song, J, Zong, S, Liu, M, Stovicek, O, Gao, Y, Yi, C.
Deposit date:2016-03-17
Release date:2016-07-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Tautomerization-dependent recognition and excision of oxidation damage in base-excision DNA repair
Proc.Natl.Acad.Sci.USA, 113, 2016
5IVE
DownloadVisualize
BU of 5ive by Molmil
Linked KDM5A Jmj Domain Bound to the Inhibitor N8 ( 5-methyl-7-oxo-6-(propan-2-yl)-4,7-dihydropyrazolo[1,5-a]pyrimidine-3-carbonitrile)
Descriptor: 5-methyl-7-oxo-6-(propan-2-yl)-4,7-dihydropyrazolo[1,5-a]pyrimidine-3-carbonitrile, Lysine-specific demethylase 5A, MANGANESE (II) ION
Authors:Horton, J.R, Cheng, X.
Deposit date:2016-03-20
Release date:2016-07-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.783 Å)
Cite:Structural Basis for KDM5A Histone Lysine Demethylase Inhibition by Diverse Compounds.
Cell Chem Biol, 23, 2016
1RNF
DownloadVisualize
BU of 1rnf by Molmil
X-RAY CRYSTAL STRUCTURE OF UNLIGANDED HUMAN RIBONUCLEASE 4
Descriptor: PROTEIN (RIBONUCLEASE 4)
Authors:Terzyan, S.S, Peracaula, R, De Llorens, R, Tsushima, Y, Yamada, H, Seno, M, Gomis-Rueth, F.X, Coll, M.
Deposit date:1998-10-29
Release date:1999-10-29
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The three-dimensional structure of human RNase 4, unliganded and complexed with d(Up), reveals the basis for its uridine selectivity.
J.Mol.Biol., 285, 1999
1JVG
DownloadVisualize
BU of 1jvg by Molmil
CRYSTAL STRUCTURE OF HUMAN AGX2 COMPLEXED WITH UDPGALNAC
Descriptor: GLCNAC1P URIDYLTRANSFERASE, URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE
Authors:Peneff, C, Bourne, Y.
Deposit date:2001-08-30
Release date:2002-08-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of two human pyrophosphorylase isoforms in complexes with UDPGlc(Gal)NAc: role of the alternatively spliced insert in the enzyme oligomeric assembly and active site architecture.
EMBO J., 20, 2001
5J8R
DownloadVisualize
BU of 5j8r by Molmil
Crystal Structure of the Catalytic Domain of Human Protein Tyrosine Phosphatase non-receptor Type 12 - K61R mutant
Descriptor: Tyrosine-protein phosphatase non-receptor type 12
Authors:Li, H, Yang, F, Xu, Y.F, Wang, W.J, Xiao, P, Yu, X, Sun, J.P.
Deposit date:2016-04-08
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.043 Å)
Cite:Crystal structure and substrate specificity of PTPN12.
Cell Rep, 15, 2016
5J97
DownloadVisualize
BU of 5j97 by Molmil
Dimerization domain of cytoplasmic activation/proliferation-associated protein-2 (caprin-2)
Descriptor: Caprin-2
Authors:Wu, Y, Zhu, J, Huang, X, Du, Z.
Deposit date:2016-04-08
Release date:2017-08-09
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Dimerization domain of cytoplasmic activation/proliferation-associated protein-2 (caprin-2)
To Be Published
1RUT
DownloadVisualize
BU of 1rut by Molmil
Complex of LMO4 LIM domains 1 and 2 with the ldb1 LID domain
Descriptor: Fusion protein of Lmo4 protein and LIM domain-binding protein 1, ZINC ION
Authors:Deane, J.E, Ryan, D.P, Maher, M.J, Kwan, A.H.Y, Bacca, M, Mackay, J.P, Guss, J.M, Visvader, J.E, Matthews, J.M.
Deposit date:2003-12-11
Release date:2004-10-12
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Tandem LIM domains provide synergistic binding in the LMO4:Ldb1 complex
Embo J., 23, 2004
5JHU
DownloadVisualize
BU of 5jhu by Molmil
Potent, Reversible MetAP2 Inhibitors via FBDD
Descriptor: DIMETHYL SULFOXIDE, GLYCEROL, MANGANESE (II) ION, ...
Authors:Dougan, D.R.
Deposit date:2016-04-21
Release date:2016-05-25
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Discovery of potent, reversible MetAP2 inhibitors via fragment based drug discovery and structure based drug design-Part 1.
Bioorg.Med.Chem.Lett., 26, 2016
1RK8
DownloadVisualize
BU of 1rk8 by Molmil
Structure of the cytosolic protein PYM bound to the Mago-Y14 core of the exon junction complex
Descriptor: CALCIUM ION, CG8781-PA protein, Mago nashi protein, ...
Authors:Bono, F, Ebert, J, Guettler, T, Izaurralde, E, Conti, E.
Deposit date:2003-11-21
Release date:2004-04-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular insights into the interaction of PYM with the Mago-Y14 core of the exon junction complex
EMBO Rep., 5, 2004
1JGN
DownloadVisualize
BU of 1jgn by Molmil
Solution structure of the C-terminal PABC domain of human poly(A)-binding protein in complex with the peptide from Paip2
Descriptor: polyadenylate-binding protein 1, polyadenylate-binding protein-interacting protein 2
Authors:Kozlov, G, Siddiqui, N, Coillet-Matillon, S, Ekiel, I, Gehring, K.
Deposit date:2001-06-26
Release date:2003-06-24
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural basis of ligand recognition by PABC, a highly specific peptide-binding domain found in poly(A)-binding protein and a HECT ubiquitin ligase
EMBO J., 23, 2004
5IWZ
DownloadVisualize
BU of 5iwz by Molmil
Synaptonemal complex protein
Descriptor: Synaptonemal complex protein 2
Authors:Feng, J, Fu, S, Cao, X, Wu, H, Lu, J, Zeng, M, Liu, L, Yang, X, Shen, Y.
Deposit date:2016-03-23
Release date:2017-03-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.098 Å)
Cite:Structure of synaptonemal complexes protein at 2.6 angstroms resolution
To Be Published
1RWK
DownloadVisualize
BU of 1rwk by Molmil
Crystal structure of human caspase-1 in complex with 3-(2-mercapto-acetylamino)-4-oxo-pentanoic acid
Descriptor: 3-(2-MERCAPTO-ACETYLAMINO)-4-OXO-PENTANOIC ACID, Interleukin-1 beta convertase
Authors:Romanowski, M.J, Lam, J.W, Fahr, B.T, O'Brien, T.
Deposit date:2003-12-16
Release date:2004-12-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural analysis of caspase-1 inhibitors derived from Tethering.
Acta Crystallogr.,Sect.F, 61, 2005
1JCQ
DownloadVisualize
BU of 1jcq by Molmil
CRYSTAL STRUCTURE OF HUMAN PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH FARNESYL DIPHOSPHATE AND THE PEPTIDOMIMETIC INHIBITOR L-739,750
Descriptor: 2(S)-{2(S)-[2(R)-AMINO-3-MERCAPTO]PROPYLAMINO-3(S)-METHYL}PENTYLOXY-3-PHENYLPROPIONYLMETHIONINE SULFONE, ACETIC ACID, FARNESYL DIPHOSPHATE, ...
Authors:Long, S.B, Casey, P.J, Beese, L.S.
Deposit date:2001-06-11
Release date:2001-11-02
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of human protein farnesyltransferase reveals the basis for inhibition by CaaX tetrapeptides and their mimetics.
Proc.Natl.Acad.Sci.USA, 98, 2001
5UC9
DownloadVisualize
BU of 5uc9 by Molmil
Crystal structure of human Heme Oxygenase-2 in complex with Myristate
Descriptor: Heme oxygenase 2, MYRISTIC ACID
Authors:Luo, S, Tong, L.
Deposit date:2016-12-22
Release date:2017-02-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.903 Å)
Cite:Heme Oxygenase 2 Binds Myristate to Regulate Retrovirus Assembly and TLR4 Signaling.
Cell Host Microbe, 21, 2017
1RHD
DownloadVisualize
BU of 1rhd by Molmil
STRUCTURE OF BOVINE LIVER RHODANESE. I. STRUCTURE DETERMINATION AT 2.5 ANGSTROMS RESOLUTION AND A COMPARISON OF THE CONFORMATION AND SEQUENCE OF ITS TWO DOMAINS
Descriptor: RHODANESE
Authors:Hol, W.G.J, Ploegman, J.H, Kalk, K.H, Drent, G.
Deposit date:1977-11-23
Release date:1978-01-16
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of bovine liver rhodanese. I. Structure determination at 2.5 A resolution and a comparison of the conformation and sequence of its two domains.
J.Mol.Biol., 123, 1978
5J31
DownloadVisualize
BU of 5j31 by Molmil
Crystal structure of 14-3-3zeta in complex with an alkyne cross-linked cyclic peptide derived from ExoS
Descriptor: 14-3-3 protein zeta/delta, BENZOIC ACID, Exoenzyme S
Authors:Wallraven, K, Cromm, P, Bier, D, Glas, A, Grossmann, T.
Deposit date:2016-03-30
Release date:2016-10-19
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Constraining an Irregular Peptide Secondary Structure through Ring-Closing Alkyne Metathesis.
Chembiochem, 17, 2016
1R79
DownloadVisualize
BU of 1r79 by Molmil
Solution Structure of The C1 Domain of The Human Diacylglycerol Kinase Delta
Descriptor: Diacylglycerol kinase, delta, ZINC ION
Authors:Miyamoto, K, Tomizawa, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-10-21
Release date:2004-04-21
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of The C1 Domain of The Human Diacylglycerol Kinase Delta
To be Published
5J2A
DownloadVisualize
BU of 5j2a by Molmil
Ternary complex crystal structure of DNA polymerase Beta with A:C mismatch at the primer terminus
Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CHLORIDE ION, DNA polymerase beta, ...
Authors:Batra, V.K, Wilson, S.H.
Deposit date:2016-03-29
Release date:2016-10-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure, 24, 2016
5J2F
DownloadVisualize
BU of 5j2f by Molmil
Ternary complex crystal structure of DNA polymerase Beta with G:A mismatch at the primer terminus
Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CHLORIDE ION, DNA polymerase beta, ...
Authors:Batra, V.K, Wilson, S.H.
Deposit date:2016-03-29
Release date:2016-10-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure, 24, 2016

224004

數據於2024-08-21公開中

PDB statisticsPDBj update infoContact PDBjnumon