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5J8P
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BU of 5j8p by Molmil
Lys27-linked diubiquitin
Descriptor: D-ubiquitin, MAGNESIUM ION, ubiquitin
Authors:Pan, M, Gao, S, Zheng, Y.
Deposit date:2016-04-08
Release date:2016-05-18
Last modified:2022-02-09
Method:X-RAY DIFFRACTION (1.554 Å)
Cite:Structure of Lys27-linked diubiquitin
To Be Published
5JBV
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BU of 5jbv by Molmil
Lys27-linked triubiquitin
Descriptor: D-ubiquitin, NITRATE ION, Ubiquitin
Authors:Pan, M, Gao, S, Zheng, Y.
Deposit date:2016-04-13
Release date:2016-05-18
Last modified:2022-02-09
Method:X-RAY DIFFRACTION (2.104 Å)
Cite:Structure of Lys27-linked triubiquitin
To Be Published
8DMB
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BU of 8dmb by Molmil
Structure of Desulfovirgula thermocuniculi IsrB (DtIsrB) in complex with omega RNA and target DNA
Descriptor: MAGNESIUM ION, Ubiquitin-like protein SMT3,IsrB protein,monomeric superfolder Green Fluorescent Protein, non-target DNA, ...
Authors:Seiichi, H, Kappel, K, Zhang, F.
Deposit date:2022-07-08
Release date:2022-10-19
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure of the OMEGA nickase IsrB in complex with omega RNA and target DNA.
Nature, 610, 2022
8E7O
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BU of 8e7o by Molmil
CRYSTAL STRUCTURE OF LYS48-LINKED TETRAUBIQUITIN
Descriptor: SULFATE ION, Ubiquitin
Authors:Lemma, B.E, Fushman, D.
Deposit date:2022-08-24
Release date:2022-11-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Mechanism of selective recognition of Lys48-linked polyubiquitin by macrocyclic peptide inhibitors of proteasomal degradation.
Nat Commun, 14, 2023
8DMS
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BU of 8dms by Molmil
Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester soaked with ADP-ribose
Descriptor: CITRATE ANION, METHYL 4-AMINOBUTANOATE, MavL, ...
Authors:Zhang, Z, Das, C.
Deposit date:2022-07-08
Release date:2023-07-12
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Legionella metaeffector MavL reverses ubiquitin ADP-ribosylation via a conserved arginine-specific macrodomain.
Nat Commun, 15, 2024
8DMQ
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BU of 8dmq by Molmil
Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester
Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, METHYL 4-AMINOBUTANOATE, ...
Authors:Zhang, Z, Das, C.
Deposit date:2022-07-08
Release date:2023-07-12
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (2.195 Å)
Cite:Legionella metaeffector MavL reverses ubiquitin ADP-ribosylation via a conserved arginine-specific macrodomain.
Nat Commun, 15, 2024
7BU0
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BU of 7bu0 by Molmil
Crystal structure of a OTU deubiquitinase in complex with Ub-PA
Descriptor: Polyubiquitin-B, Uncharacterized protein, prop-2-en-1-amine
Authors:Ouyang, S.Y, Zhen, X.K.
Deposit date:2020-04-03
Release date:2020-11-18
Last modified:2023-04-05
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Interplay between bacterial deubiquitinase and ubiquitin E3 ligase regulates ubiquitin dynamics on Legionella phagosomes.
Elife, 9, 2020
6GF2
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BU of 6gf2 by Molmil
The structure of the ubiquitin-like modifier FAT10 reveals a novel targeting mechanism for degradation by the 26S proteasome
Descriptor: Ubiquitin D
Authors:Aichem, A, Anders, S, Catone, N, Roessler, P, Stotz, S, Berg, A, Schwab, R, Scheuermann, S, Bialas, J, Schmidtke, G, Peter, C, Groettrup, M, Wiesner, S.
Deposit date:2018-04-29
Release date:2018-08-08
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:The structure of the ubiquitin-like modifier FAT10 reveals an alternative targeting mechanism for proteasomal degradation.
Nat Commun, 9, 2018
6GF1
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BU of 6gf1 by Molmil
The structure of the ubiquitin-like modifier FAT10 reveals a novel targeting mechanism for degradation by the 26S proteasome
Descriptor: SULFATE ION, Ubiquitin D
Authors:Aichem, A, Anders, S, Catone, N, Roessler, P, Stotz, S, Berg, A, Schwab, R, Scheuermann, S, Bialas, J, Schmidtke, G, Peter, C, Groettrup, M, Wiesner, S.
Deposit date:2018-04-28
Release date:2018-08-29
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.925 Å)
Cite:The structure of the ubiquitin-like modifier FAT10 reveals an alternative targeting mechanism for proteasomal degradation.
Nat Commun, 9, 2018
6JL3
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BU of 6jl3 by Molmil
Crystal Structure of the UBL domain of Plasmodium Falciparum Dsk2
Descriptor: Ubiquitin domain-containing protein DSK2,putative
Authors:Gupta, I, Khan, S.
Deposit date:2019-03-03
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.303 Å)
Cite:The recognition of proteasomal receptors by Plasmodium falciparum DSK2.
Mol.Biochem.Parasitol., 236, 2020
8HTD
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BU of 8htd by Molmil
Crystal structure of an effector from Chromobacterium violaceum in complex with ubiquitin
Descriptor: NAD(+)--protein-threonine ADP-ribosyltransferase, Ubiquitin
Authors:Tan, J, Wang, X, Zhou, Y, Zhu, Y.
Deposit date:2022-12-21
Release date:2023-11-22
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (1.848 Å)
Cite:Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
8HTC
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BU of 8htc by Molmil
Crystal structure of a SeMet-labeled effector from Chromobacterium violaceum in complex with Ubiquitin
Descriptor: NAD(+)--protein-threonine ADP-ribosyltransferase, Ubiquitin-40S ribosomal protein S27a (Fragment)
Authors:Tan, J, Wang, X, Zhou, Y, Zhu, Y.
Deposit date:2022-12-21
Release date:2023-11-22
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
8HTE
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BU of 8hte by Molmil
Crystal structure of an effector mutant in complex with ubiquitin
Descriptor: GLYCEROL, NAD(+)--protein-threonine ADP-ribosyltransferase, NICOTINAMIDE, ...
Authors:Tan, J, Wang, X, Zhou, Y, Zhu, Y.
Deposit date:2022-12-21
Release date:2023-11-22
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.307 Å)
Cite:Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
8HTF
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BU of 8htf by Molmil
Crystal structure of an effector in complex with ubiquitin
Descriptor: NAD(+)--protein-threonine ADP-ribosyltransferase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Ubiquitin-40S ribosomal protein S27a (Fragment)
Authors:Tan, J, Wang, X, Zhou, Y, Zhu, Y.
Deposit date:2022-12-21
Release date:2023-11-22
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.151 Å)
Cite:Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
8IPJ
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BU of 8ipj by Molmil
Crystal structure of the Legionella effector protein MavL with ADPR-Ub
Descriptor: MavL, Ubiquitin, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
Authors:Ouyang, S, Guan, H.
Deposit date:2023-03-14
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.003 Å)
Cite:Crystal structure of the Legionella effector protein MavL with ADPR-Ub
To Be Published
8ADB
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BU of 8adb by Molmil
Viral tegument-like DUBs
Descriptor: CITRIC ACID, Deubiquitinating enzyme, Ubiquitin, ...
Authors:Erven, I, Abraham, E.T, Hermanns, T, Baumann, U, Hofmann, K.
Deposit date:2022-07-08
Release date:2023-02-15
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:A widely distributed family of eukaryotic and bacterial deubiquitinases related to herpesviral large tegument proteins.
Nat Commun, 13, 2022
8A67
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BU of 8a67 by Molmil
Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with matured synthetic nanobody NbSL3.3Q (3rd generation)
Descriptor: CHLORIDE ION, GLYCEROL, ISOPROPYL ALCOHOL, ...
Authors:Lange, S.M, Kulathu, Y.
Deposit date:2022-06-16
Release date:2023-02-15
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:VCP/p97-associated proteins are binders and debranching enzymes of K48-K63-branched ubiquitin chains.
Nat.Struct.Mol.Biol., 2024
1AAR
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BU of 1aar by Molmil
STRUCTURE OF A DIUBIQUITIN CONJUGATE AND A MODEL FOR INTERACTION WITH UBIQUITIN CONJUGATING ENZYME (E2)
Descriptor: DI-UBIQUITIN
Authors:Cook, W.J, Jeffrey, L.C, Carson, M, Chen, Z, Pickart, C.M.
Deposit date:1992-04-17
Release date:1993-10-31
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of a diubiquitin conjugate and a model for interaction with ubiquitin conjugating enzyme (E2).
J.Biol.Chem., 267, 1992
2KX3
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BU of 2kx3 by Molmil
The solution structure of the mutant of UBL domain of UBLCP1, I5M
Descriptor: Ubiquitin-like domain-containing CTD phosphatase 1
Authors:Lee, N, Ko, S.
Deposit date:2010-04-23
Release date:2011-04-27
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The solution structure of the mutant of UBL domain of UBLCP1, I5M
To be Published
2KD0
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BU of 2kd0 by Molmil
NMR solution structure of O64736 protein from Arabidopsis thaliana. Northeast Structural Genomics Consortium MEGA Target AR3445A
Descriptor: LRR repeats and ubiquitin-like domain-containing protein At2g30105
Authors:Swapna, G.V.T, Shastry, R, Foote, E, Ciccosanti, C, Jiang, M, Xiao, R, Nair, R, Everett, J, Huang, Y, Acton, T.B, Rost, B, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-12-31
Release date:2009-02-10
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:NMR solution structure of O64736 protein from Arabidopsis thaliana
To be Published
2LRW
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BU of 2lrw by Molmil
Solution structure of a ubiquitin-like protein from Trypanosoma brucei
Descriptor: Ubiquitin, putative
Authors:Wang, R, Wang, T, Liao, S, Zhang, J, Tu, X.
Deposit date:2012-04-13
Release date:2013-04-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of a ubiqutin-like protein from Trypanosoma bucei
To be Published
2LJ5
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BU of 2lj5 by Molmil
Description of the Structural fluctuations of proteins from structure-based calculations of Residual dipolar couplings
Descriptor: Ubiquitin
Authors:De Simone, A, Montalvao, R, Vendruscolo, M.
Deposit date:2011-09-06
Release date:2012-07-18
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Determination of structural fluctuations of proteins from structure-based calculations of residual dipolar couplings.
J.Biomol.Nmr, 53, 2012
2L7R
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BU of 2l7r by Molmil
Solution NMR structure of N-terminal Ubiquitin-like domain of FUBI, a ribosomal protein S30 precursor from Homo sapiens. NorthEast Structural Genomics consortium (NESG) target HR6166
Descriptor: Ubiquitin-like protein FUBI
Authors:Lemak, A, Yee, A, Houliston, S, Semesi, A, Doherty, R, Dhe-Paganon, S, Montelione, G.T, Arrowsmith, C, Northeast Structural Genomics Consortium (NESG), Structural Genomics Consortium (SGC)
Deposit date:2010-12-20
Release date:2011-01-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR structure of N-terminal Ubiquitin-like domain of FUBI, a ribosomal protein S30 precursor from Homo sapiens. NorthEast Structural Genomics consortium (NESG) target HR6166
To be Published
2LGD
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BU of 2lgd by Molmil
The high resolution structure of ubiquitin like domain of UBLCP1
Descriptor: Ubiquitin-like domain-containing CTD phosphatase 1
Authors:Lee, W, Ko, S.
Deposit date:2011-07-25
Release date:2012-08-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The High Resolution Structure of Ubiquitin Like Dom Ublcp1
To be Published
2M8S
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BU of 2m8s by Molmil
NMR Structure of the Cytoplasmic Tail of the Membrane Form of Heparin-binding EGF-like Growth Factor (proHB-EGF-CT) Complexed with the Ubiquitin Homology Domain of Bcl-2-associated Athanogene 1 from Mus musculus (mBAG-1-UBH)
Descriptor: BAG family molecular chaperone regulator 1, Proheparin-binding EGF-like growth factor
Authors:Huang, H.W, Yu, C.
Deposit date:2013-06-03
Release date:2014-04-16
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Structure of the Cytoplasmic Tail of Heparin Binding EGF-like Growth Factor (proHB-EGF-CT) Complexed with the Ubiquitin Homology Domain of Bcl-2-Associated Athanogene 1 from Mus musculus (mBAG-1-UBH).
Biochemistry, 53, 2014

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數據於2024-09-11公開中

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