Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6HL5
DownloadVisualize
BU of 6hl5 by Molmil
Factor Inhibiting HIF (FIH) in complex with zinc, NOG and ASPP1(932-954)
Descriptor: Apoptosis-stimulating of p53 protein 1, GLYCEROL, Hypoxia-inducible factor 1-alpha inhibitor, ...
Authors:Leissing, T.M, Chowdhury, R, Clifton, I.J, Lu, X, Schofield, C.J.
Deposit date:2018-09-10
Release date:2019-10-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Factor Inhibiting HIF (FIH) in complex with zinc, NOG and ASPP1(932-954)
To Be Published
6MIT
DownloadVisualize
BU of 6mit by Molmil
LptBFGC from Enterobacter cloacae
Descriptor: CHLORIDE ION, LPS export ABC transporter permease LptF, Lipopolysaccharide export system ATP-binding protein, ...
Authors:Owens, T.W, Kahne, D, Kruse, A.C.
Deposit date:2018-09-20
Release date:2019-03-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis of unidirectional export of lipopolysaccharide to the cell surface.
Nature, 567, 2019
6KDN
DownloadVisualize
BU of 6kdn by Molmil
HIV-1 reverse transcriptase with Q151M/Y115F/F116Y:DNA:dGTP ternary complex
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA/RNA (38-MER), GLYCEROL, ...
Authors:Yasutake, Y, Hattori, S.I, Tamura, N, Maeda, K.
Deposit date:2019-07-02
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.303 Å)
Cite:Structural features in common of HBV and HIV-1 resistance against chirally-distinct nucleoside analogues entecavir and lamivudine.
Sci Rep, 10, 2020
6M6B
DownloadVisualize
BU of 6m6b by Molmil
Cryo-EM structure of Thermus thermophilus Mfd in complex with RNA polymerase and ATP-gamma-S
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Shi, J, Wen, A, Feng, Y.
Deposit date:2020-03-14
Release date:2020-10-14
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis of Mfd-dependent transcription termination.
Nucleic Acids Res., 48, 2020
6JZR
DownloadVisualize
BU of 6jzr by Molmil
Structure of the bacterial flagellar polyrod
Descriptor: Flagellar basal-body rod protein FlgG
Authors:Saijo-Hamano, Y, Matsunami, H, Namba, K, Imada, K.
Deposit date:2019-05-03
Release date:2019-07-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Architecture of the Bacterial Flagellar Distal Rod and Hook ofSalmonella.
Biomolecules, 9, 2019
6KH1
DownloadVisualize
BU of 6kh1 by Molmil
Design and crystal structure of protein MOFs with ferritin nanocages as linkers and nickel clusters as nodes
Descriptor: FE (III) ION, Ferritin, NICKEL (II) ION
Authors:Gu, C, Chen, H, Wang, Y, Zhang, T, Whang, H, Zhao, G.
Deposit date:2019-07-12
Release date:2020-01-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Insight into Binary Protein Metal-Organic Frameworks with Ferritin Nanocages as Linkers and Nickel Clusters as Nodes.
Chemistry, 26, 2020
3R1A
DownloadVisualize
BU of 3r1a by Molmil
Closed crystal structure of cytochrome P450 2B4 covalently bound to the mechanism-based inactivator tert-butylphenylacetylene
Descriptor: (4-tert-butylphenyl)acetaldehyde, Cytochrome P450 2B4, PROTOPORPHYRIN IX CONTAINING FE
Authors:Gay, S.C, Zhang, H, Stout, C.D, Hollenberg, P.F, Halpert, J.R.
Deposit date:2011-03-09
Release date:2011-05-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural Analysis of Mammalian Cytochrome P450 2B4 Covalently Bound to the Mechanism-Based Inactivator tert-Butylphenylacetylene: Insight into Partial Enzymatic Activity.
Biochemistry, 50, 2011
6K3H
DownloadVisualize
BU of 6k3h by Molmil
Crystallographic Analysis of Nucleoside Diphosphate Kinase (NDK) from Aspergillus Flavus
Descriptor: Nucleoside diphosphate kinase
Authors:Wang, Y, Wang, S, Wang, S.H.
Deposit date:2019-05-18
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.179 Å)
Cite:Molecular and structural basis of nucleoside diphosphate kinase-mediated regulation of spore and sclerotia development in the fungusAspergillus flavus.
J.Biol.Chem., 294, 2019
3R3Z
DownloadVisualize
BU of 3r3z by Molmil
Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - WT/Glycolate
Descriptor: Fluoroacetate dehalogenase, GLYCOLIC ACID, NICKEL (II) ION
Authors:Chan, P.W.Y, Yakunin, A.F, Edwards, E.A, Pai, E.F.
Deposit date:2011-03-16
Release date:2011-05-04
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Mapping the reaction coordinates of enzymatic defluorination.
J.Am.Chem.Soc., 133, 2011
6JSI
DownloadVisualize
BU of 6jsi by Molmil
Co-purified Fatty Acid Synthase
Descriptor: Fatty acid synthase subunit alpha, Fatty acid synthase subunit beta
Authors:Qiu, S.W, Liu, S.
Deposit date:2019-04-08
Release date:2019-09-25
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Modulation of fatty acid synthase by ATR checkpoint kinase Rad3.
J Mol Cell Biol, 11, 2019
6KDJ
DownloadVisualize
BU of 6kdj by Molmil
HIV-1 reverse transcriptase with Q151M/Y115F/F116Y:DNA:lamivudine 5'-triphosphate ternary complex
Descriptor: DNA/RNA (38-MER), GLYCEROL, HIV-1 RT p51 subunit, ...
Authors:Yasutake, Y, Hattori, S.I, Tamura, N, Maeda, K.
Deposit date:2019-07-02
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structural features in common of HBV and HIV-1 resistance against chirally-distinct nucleoside analogues entecavir and lamivudine.
Sci Rep, 10, 2020
6JW1
DownloadVisualize
BU of 6jw1 by Molmil
Universal RVD R* accommodates 5mC via water-mediated interactions
Descriptor: DNA (5'-D(*AP*GP*AP*GP*AP*CP*GP*CP*GP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*(5CM)P*GP*CP*GP*TP*CP*TP*CP*T)-3'), TAL effector
Authors:Liu, L, Yi, C.
Deposit date:2019-04-18
Release date:2020-04-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structural Insights into the Specific Recognition of 5-methylcytosine and 5-hydroxymethylcytosine by TAL Effectors.
J.Mol.Biol., 432, 2020
6K02
DownloadVisualize
BU of 6k02 by Molmil
Crystal structure of ceNAP1 core
Descriptor: Nucleosome Assembly Protein, ZINC ION
Authors:Liu, Y.R.
Deposit date:2019-05-05
Release date:2019-10-09
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.162 Å)
Cite:Crystal structure of xlH2A-H2B
Structure, 2019
6K2J
DownloadVisualize
BU of 6k2j by Molmil
Crystal Structure of the DNA Complex of C. crescentus GapR
Descriptor: 10A DNA_front, 10A DNA_reverse, UPF0335 protein CCNA_03428
Authors:Xia, B, Huang, Q.
Deposit date:2019-05-14
Release date:2020-08-05
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:GapR binds DNA through dynamic opening of its tetrameric interface.
Nucleic Acids Res., 48, 2020
3R3Y
DownloadVisualize
BU of 3r3y by Molmil
Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - His280Asn/Fluoroacetate
Descriptor: CALCIUM ION, CHLORIDE ION, Fluoroacetate dehalogenase
Authors:Chan, P.W.Y, Yakunin, A.F, Edwards, E.A, Pai, E.F.
Deposit date:2011-03-16
Release date:2011-05-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Mapping the reaction coordinates of enzymatic defluorination.
J.Am.Chem.Soc., 133, 2011
6LKS
DownloadVisualize
BU of 6lks by Molmil
Effects of zinc ion on oligomerization and pH stability of influenza virus hemagglutinin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Seok, J, Kim, K.
Deposit date:2019-12-20
Release date:2020-10-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:Divalent cation-induced conformational changes of influenza virus hemagglutinin.
Sci Rep, 10, 2020
6HWE
DownloadVisualize
BU of 6hwe by Molmil
Yeast 20S proteasome beta2-G45A mutant in complex with carfilzomib
Descriptor: (2~{S})-~{N}-[(2~{S})-1-[[(3~{R},4~{S})-2,6-dimethyl-2,3-bis(oxidanyl)heptan-4-yl]amino]-1-oxidanylidene-3-phenyl-propan-2-yl]-4-methyl-2-[[(2~{S})-2-(2-morpholin-4-ylethanoylamino)-4-phenyl-butanoyl]amino]pentanamide, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2018-10-11
Release date:2019-01-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
6HUB
DownloadVisualize
BU of 6hub by Molmil
Yeast 20S proteasome with human beta2c (S171G) in complex with 16
Descriptor: (2~{S})-~{N}-[(2~{S},3~{R})-1-[[(2~{S})-1-[4-(aminomethyl)phenyl]-4-methylsulfonyl-butan-2-yl]amino]-3-oxidanyl-1-oxidanylidene-butan-2-yl]-2-[[(2~{R})-2-azido-3-phenyl-propanoyl]amino]-4-methyl-pentanamide, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2018-10-05
Release date:2019-01-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
6NX4
DownloadVisualize
BU of 6nx4 by Molmil
Structure of the C-terminal Helical Repeat Domain of Eukaryotic Elongation Factor 2 Kinase (eEF-2K)
Descriptor: Eukaryotic elongation factor 2 kinase
Authors:Piserchio, A, Will, N, Giles, D.H, Hajredini, F, Dalby, K.N, Ghose, R.
Deposit date:2019-02-08
Release date:2019-05-29
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution Structure of the Carboxy-Terminal Tandem Repeat Domain of Eukaryotic Elongation Factor 2 Kinase and Its Role in Substrate Recognition.
J.Mol.Biol., 431, 2019
6HZM
DownloadVisualize
BU of 6hzm by Molmil
Cryo-EM structure of the ABCG2 E211Q mutant bound to ATP and Magnesium (alternative placement of Magnesium into the cryo-EM density)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP-binding cassette sub-family G member 2, MAGNESIUM ION
Authors:Manolaridis, I, Jackson, S.M, Taylor, N.M.I, Kowal, J, Stahlberg, H, Locher, K.P.
Deposit date:2018-10-23
Release date:2018-11-14
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Cryo-EM structures of a human ABCG2 mutant trapped in ATP-bound and substrate-bound states.
Nature, 563, 2018
6HVT
DownloadVisualize
BU of 6hvt by Molmil
Yeast 20S proteasome with human beta2i (1-53) in complex with 20
Descriptor: CHLORIDE ION, MAGNESIUM ION, Probable proteasome subunit alpha type-7, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2018-10-11
Release date:2019-01-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
6HWA
DownloadVisualize
BU of 6hwa by Molmil
Yeast 20S proteasome in complex with 43
Descriptor: (2~{S})-~{N}-[(2~{S},3~{R})-1-[(4~{a}~{S},8~{a}~{S})-1,2,3,4,4~{a},5,6,7,8,8~{a}-decahydronaphthalen-2-yl]-4-methyl-3,4-bis(oxidanyl)pentan-2-yl]-3-(4-methoxyphenyl)-2-[[(2~{S})-2-(2-morpholin-4-ylethanoylamino)propanoyl]amino]propanamide, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2018-10-11
Release date:2019-01-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
3TPK
DownloadVisualize
BU of 3tpk by Molmil
Crystal structure of the oligomer-specific KW1 antibody fragment
Descriptor: 1,2-ETHANEDIOL, BENZAMIDINE, Immunoglobulin heavy chain antibody variable domain KW1
Authors:Parthier, C, Morgado, I, Stubbs, M.T, Fandrich, M.
Deposit date:2011-09-08
Release date:2012-07-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Molecular basis of beta-amyloid oligomer recognition with a conformational antibody fragment.
Proc.Natl.Acad.Sci.USA, 109, 2012
6O1L
DownloadVisualize
BU of 6o1l by Molmil
Architectural principles for Hfq/Crc-mediated regulation of gene expression Hfq-Crc-amiE 2:3:2 complex
Descriptor: Catabolite repression control protein, RNA (5'-R(*AP*AP*AP*AP*AP*UP*AP*AP*CP*AP*AP*CP*AP*AP*GP*AP*GP*G)-3'), RNA-binding protein Hfq
Authors:Pei, X.Y, Dendooven, T, Sonnleitner, E, Chen, S, Blasi, U, Luisi, B.F.
Deposit date:2019-02-20
Release date:2019-03-13
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:Architectural principles for Hfq/Crc-mediated regulation of gene expression.
Elife, 8, 2019
3TNP
DownloadVisualize
BU of 3tnp by Molmil
Structure and Allostery of the PKA RIIb Tetrameric Holoenzyme
Descriptor: cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase type II-beta regulatory subunit
Authors:Zhang, P, Smith-Nguyen, E.V, Keshwani, M.M, Deal, M.S, Kornev, A.P, Taylor, S.S.
Deposit date:2011-09-01
Release date:2012-02-01
Last modified:2013-02-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and allostery of the PKA RIIbeta tetrameric holoenzyme
Science, 335, 2012

223790

数据于2024-08-14公开中

PDB statisticsPDBj update infoContact PDBjnumon