PDB: 1507 resultsInfo pagesStatus searchChemie searchBIRD

---

2K39	Recognition dynamics up to microseconds revealed from RDC derived ubiquitin ensemble in solution Descriptor: Ubiquitin Authors: Lange, O.F, Lakomek, N.A, Fares, C, Schroder, G, Walter, K, Becker, S, Meiler, J, Grubmuller, H, Griesinger, C, de Groot, B.L. Deposit date: 2008-04-25 Release date: 2008-06-24 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution. Science, 320, 2008
2K25	Automated NMR Structure of the UBB by FAPSY Descriptor: UBB Authors: Lee, W, Jung, J, Lee, W. Deposit date: 2008-03-24 Release date: 2008-09-30 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: The Automated Suite for Protein Structure by NMR Spectroscopy To be Published
3CMM	Crystal Structure of the Uba1-Ubiquitin Complex Descriptor: PROLINE, Ubiquitin, Ubiquitin-activating enzyme E1 1 Authors: Lee, I, Schindelin, H. Deposit date: 2008-03-23 Release date: 2008-08-05 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural insights into E1-catalyzed ubiquitin activation and transfer to conjugating enzymes. Cell(Cambridge,Mass.), 134, 2008
2JZZ	Solid-State NMR Structure of Microcrystalline Ubiquitin Descriptor: Ubiquitin Authors: Manolikas, T, Herrmann, T, Meier, B.H. Deposit date: 2008-01-22 Release date: 2008-03-25 Last modified: 2024-05-08 Method: SOLID-STATE NMR Cite: Protein structure determination from 13C spin-diffusion solid-state NMR spectroscopy. J.Am.Chem.Soc., 130, 2008
3C0R	Structure of Ovarian Tumor (OTU) domain in complex with Ubiquitin Descriptor: 3-AMINOPROPANE, Ubiquitin, Ubiquitin thioesterase OTU1 Authors: Messick, T.E, Marmorstein, R. Deposit date: 2008-01-21 Release date: 2008-02-19 Last modified: 2017-10-25 Method: X-RAY DIFFRACTION (2.315 Å) Cite: Structural basis for ubiquitin recognition by the Otu1 ovarian tumor domain protein J.Biol.Chem., 283, 2008
3BY4	Structure of Ovarian Tumor (OTU) domain in complex with Ubiquitin Descriptor: 3-AMINOPROPANE, Ubiquitin, Ubiquitin thioesterase OTU1 Authors: Messick, T.E, Marmorstein, R. Deposit date: 2008-01-15 Release date: 2008-02-19 Last modified: 2017-10-25 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Structural basis for ubiquitin recognition by the Otu1 ovarian tumor domain protein J.Biol.Chem., 283, 2008
2JZ3	SOCS box elonginBC ternary complex Descriptor: Suppressor of cytokine signaling 3, Transcription elongation factor B polypeptide 1, Transcription elongation factor B polypeptide 2 Authors: Babon, J.J, Sabo, J, Soetopo, A, Yao, S, Bailey, M.F, Zhang, J, Nicola, N.A, Norton, R.S. Deposit date: 2007-12-27 Release date: 2008-09-23 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: The SOCS box domain of SOCS3: structure and interaction with the elonginBC-cullin5 ubiquitin ligase J.Mol.Biol., 381, 2008
2ZEQ	Crystal structure of ubiquitin-like domain of murine Parkin Descriptor: E3 ubiquitin-protein ligase parkin Authors: Tomoo, K. Deposit date: 2007-12-14 Release date: 2008-08-19 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Crystal structure and molecular dynamics simulation of ubiquitin-like domain of murine parkin Biochim.Biophys.Acta, 1784, 2008
2JY6	Solution structure of the complex of ubiquitin and ubiquilin 1 UBA domain Descriptor: Ubiquilin-1, Ubiquitin protein Authors: Zhang, D, Raasi, S, Fushman, D. Deposit date: 2007-12-06 Release date: 2008-03-18 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Affinity makes the difference: nonselective interaction of the UBA domain of Ubiquilin-1 with monomeric ubiquitin and polyubiquitin chains J.Mol.Biol., 377, 2008
2ZCB	Crystal Structure of ubiquitin P37A/P38A Descriptor: Ubiquitin, ZINC ION Authors: Kitahara, R, Tanaka, T, Sakata, E, Yamaguchi, Y, Kato, K, Yokoyama, S. Deposit date: 2007-11-08 Release date: 2007-11-20 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal Structure of ubiquitin P37A/P38A To be published
2ZCC	Ubiquitin crystallized under high pressure Descriptor: Ubiquitin, ZINC ION Authors: Kitahara, R, Tanaka, T, Yamashita, M, Araya, K, Yokoyama, S, Akasaka, K, Taniguchi, Y, Kato, M. Deposit date: 2007-11-08 Release date: 2007-11-20 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structure of Ubiquitin crystallized under high pressure to be published
2JWZ	Mutations in the hydrophobic core of ubiquitin differentially affect its recognition by receptor proteins Descriptor: Ubiquitin Authors: Haririnia, A, Verma, R, Purohit, N, Twarog, M, Deshaies, R, Bolon, D, Fushman, D. Deposit date: 2007-10-31 Release date: 2008-01-08 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Mutations in the hydrophobic core of ubiquitin differentially affect its recognition by receptor proteins. J.Mol.Biol., 375, 2008
2JT4	Solution Structure of the Sla1 SH3-3-Ubiquitin Complex Descriptor: Cytoskeleton assembly control protein SLA1, Ubiquitin Authors: He, Y, Radhakrishnan, I. Deposit date: 2007-07-18 Release date: 2007-09-25 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Structural Basis for Ubiquitin Recognition by SH3 Domains J.Mol.Biol., 373, 2007
2QHO	Crystal structure of the UBA domain from EDD ubiquitin ligase in complex with ubiquitin Descriptor: E3 ubiquitin-protein ligase EDD1, Ubiquitin Authors: Kozlov, G, Gehring, K. Deposit date: 2007-07-02 Release date: 2007-09-25 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural basis of ubiquitin recognition by the ubiquitin-associated (UBA) domain of the ubiquitin ligase EDD. J.Biol.Chem., 282, 2007
2Z59	Complex Structures of Mouse Rpn13 (22-130aa) and ubiquitin Descriptor: Protein ADRM1, Ubiquitin Authors: Chen, X, Schreiner, P, Groll, M, Walters, K.J. Deposit date: 2007-07-01 Release date: 2008-05-20 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Ubiquitin docking at the proteasome through a novel pleckstrin-homology domain interaction. Nature, 453, 2008
2JRI	Solution structure of the Josephin domain of Ataxin-3 in complex with ubiquitin molecule. Descriptor: Ataxin-3, UBC protein Authors: Nicastro, G, Masino, L, Esposito, V, Menon, R, Pastore, A. Deposit date: 2007-06-27 Release date: 2008-07-01 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Understanding the plasticity of the ubiquitin-protein recognition code: the josephin domain of ataxin-3 is a diubiquitin binding motif To be Published
2PEA	NMR Based Structure of the Closed Conformation of LYS48-Linked Di-Ubiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements Descriptor: Ubiquitin Authors: Ryabov, Y, Fushman, D. Deposit date: 2007-04-02 Release date: 2007-07-10 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor. J.Am.Chem.Soc., 129, 2007
2PE9	NMR Based Structure of the Open Conformation of LYS48-Linked Di-UBiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements Descriptor: Ubiquitin Authors: Ryabov, Y, Fushman, D. Deposit date: 2007-04-02 Release date: 2007-07-10 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor. J.Am.Chem.Soc., 129, 2007
2EKE	Structure of a SUMO-binding-motif mimic bound to Smt3p-Ubc9p: conservation of a noncovalent Ubiquitin-like protein-E2 complex as a platform for selective interactions within a SUMO pathway Descriptor: SUMO-conjugating enzyme UBC9, Ubiquitin-like protein SMT3 Authors: Duda, D.M, Schulman, B.A. Deposit date: 2007-03-23 Release date: 2007-05-29 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure of a SUMO-binding-motif Mimic Bound to Smt3p-Ubc9p: Conservation of a Non-covalent Ubiquitin-like Protein-E2 Complex as a Platform for Selective Interactions within a SUMO Pathway J.Mol.Biol., 369, 2007
2JF5	crystal structure of Lys63-linked di-ubiquitin Descriptor: CADMIUM ION, CHLORIDE ION, COBALT (II) ION, ... Authors: Komander, D, Odenwaelder, P, Barford, D. Deposit date: 2007-01-26 Release date: 2008-02-05 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Molecular Discrimination of Structurally Equivalent Lys 63-Linked and Linear Polyubiquitin Chains. Embo Rep., 10, 2009
2OOB	crystal structure of the UBA domain from Cbl-b ubiquitin ligase in complex with ubiquitin Descriptor: E3 ubiquitin-protein ligase CBL-B, Ubiquitin Authors: Kozlov, G, Gehring, K. Deposit date: 2007-01-25 Release date: 2007-02-06 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural basis for ubiquitin-mediated dimerization and activation of the ubiquitin protein ligase Cbl-b. Mol.Cell, 27, 2007
2OJR	Structure of ubiquitin solved by SAD using the Lanthanide-Binding Tag Descriptor: TERBIUM(III) ION, Ubiquitin Authors: Silvaggi, N.R, Allen, K.N. Deposit date: 2007-01-13 Release date: 2007-06-12 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Double-Lanthanide-Binding Tags for Macromolecular Crystallographic Structure Determination. J.Am.Chem.Soc., 129, 2007
2O6V	Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, Ubiquitin Authors: Eddins, M.J, Wolberger, C. Deposit date: 2006-12-08 Release date: 2007-02-13 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal Structure and Solution NMR Studies of Lys48-linked Tetraubiquitin at Neutral pH J.Mol.Biol., 367, 2007
2NVU	Structure of APPBP1-UBA3~NEDD8-NEDD8-MgATP-Ubc12(C111A), a trapped ubiquitin-like protein activation complex Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera, ... Authors: Huang, D.T, Hunt, H.W, Zhuang, M, Ohi, M.D, Holton, J.M, Schulman, B.A. Deposit date: 2006-11-13 Release date: 2007-01-30 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Basis for a ubiquitin-like protein thioester switch toggling E1-E2 affinity. Nature, 445, 2007
2NR2	The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native states ensembles of proteins Descriptor: Ubiquitin Authors: Richter, B, Gsponer, J, Varnai, P, Salvatella, X, Vendruscolo, M. Deposit date: 2006-11-01 Release date: 2007-05-08 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins J.Biomol.Nmr, 37, 2007

<46474849505152535455565758596061>