PDB: 98078 resultsInfo pagesStatus searchChemie searchBIRD

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3U4N	A novel covalently linked insulin dimer Descriptor: Insulin A chain, Insulin B chain Authors: Norrman, M, Vinther, T.N. Deposit date: 2011-10-10 Release date: 2012-04-11 Last modified: 2024-11-27 Method: X-RAY DIFFRACTION (1.98 Å) Cite: Novel covalently linked insulin dimer engineered to investigate the function of insulin dimerization. Plos One, 7, 2012
3QK6	Crystal structure of Escherichia coli PhnD Descriptor: PhnD, subunit of alkylphosphonate ABC transporter, UNKNOWN LIGAND Authors: Alicea, I, Schreiter, E.R. Deposit date: 2011-01-31 Release date: 2011-10-12 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structure of the Escherichia coli Phosphonate Binding Protein PhnD and Rationally Optimized Phosphonate Biosensors. J.Mol.Biol., 414, 2011
1IP9	SOLUTION STRUCTURE OF THE PB1 DOMAIN OF BEM1P Descriptor: BEM1 PROTEIN Authors: Terasawa, H, Noda, Y, Ito, T, Hatanaka, H, Ichikawa, S, Ogura, K, Sumimoto, H, Inagaki, F. Deposit date: 2001-04-26 Release date: 2001-08-15 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Structure and ligand recognition of the PB1 domain: a novel protein module binding to the PC motif. EMBO J., 20, 2001
3OWZ	Crystal structure of glycine riboswitch, soaked in Iridium Descriptor: Domain II of glycine riboswitch, GLYCINE, IRIDIUM HEXAMMINE ION, ... Authors: Huang, L, Serganov, A, Patel, D.J. Deposit date: 2010-09-20 Release date: 2010-12-29 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.949 Å) Cite: Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch. Mol.Cell, 40, 2010
3D4J	Crystal structure of Human mevalonate diphosphate decarboxylase Descriptor: Diphosphomevalonate decarboxylase, SULFATE ION Authors: Voynova, N.E, Fu, Z, Battaile, K, Herdendorf, T.J, Kim, J.-J.P, Miziorko, H.M. Deposit date: 2008-05-14 Release date: 2008-12-16 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Human mevalonate diphosphate decarboxylase: characterization, investigation of the mevalonate diphosphate binding site, and crystal structure. Arch.Biochem.Biophys., 480, 2008
3OXB	Crystal structure of glycine riboswitch with single mutation Descriptor: Domain II of glycine riboswitch, MAGNESIUM ION Authors: Huang, L, Serganov, A, Patel, D.J. Deposit date: 2010-09-21 Release date: 2010-12-29 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.947 Å) Cite: Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch. Mol.Cell, 40, 2010
3OXM	crystal structure of glycine riboswitch, Tl-Acetate soaked Descriptor: GLYCINE, MAGNESIUM ION, THALLIUM (I) ION, ... Authors: Huang, L, Serganov, A, Patel, D.J. Deposit date: 2010-09-21 Release date: 2010-12-29 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch. Mol.Cell, 40, 2010
2D1N	Collagenase-3 (MMP-13) complexed to a hydroxamic acid inhibitor Descriptor: CALCIUM ION, Collagenase 3, SM-25453, ... Authors: Kohno, T, Hochigai, H, Yamashita, E, Tsukihara, T, Kanaoka, M. Deposit date: 2005-08-29 Release date: 2006-06-27 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.37 Å) Cite: Crystal structures of the catalytic domain of human stromelysin-1 (MMP-3) and collagenase-3 (MMP-13) with a hydroxamic acid inhibitor SM-25453 Biochem.Biophys.Res.Commun., 344, 2006
1TSD	THYMIDYLATE SYNTHASE COMPLEX WITH 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (DUMP) AND FOLATE ANALOG 1843U89 Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, BETA-MERCAPTOETHANOL, S)-2-(5(((1,2-DIHYDRO-3-METHYL-1-OXOBENZO(F)QUINAZOLIN-9-YL)METHYL)AMINO)1-OXO-2-ISOINDOLINYL)GLUTARIC ACID, ... Authors: Weichsel, A, Montfort, W.R. Deposit date: 1995-08-15 Release date: 1996-01-29 Last modified: 2025-03-26 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Ligand-induced distortion of an active site in thymidylate synthase upon binding anticancer drug 1843U89. Nat.Struct.Biol., 2, 1995
1TT8	CHORISMATE LYASE WITH PRODUCT, 1.0 A RESOLUTION Descriptor: Chorismate-pyruvate lyase, P-HYDROXYBENZOIC ACID Authors: Gallagher, D.T, Mayhew, M, Holden, M.J, Vilker, V, Howard, A. Deposit date: 2004-06-22 Release date: 2004-12-28 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1 Å) Cite: Structural analysis of ligand binding and catalysis in chorismate lyase. Arch.Biochem.Biophys., 445, 2006
2Z7Q	Crystal structure of the N-terminal kinase domain of human RSK-1 bound to AMP-PCP Descriptor: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Ribosomal protein S6 kinase alpha-1 Authors: Ikuta, M, Munshi, S.K. Deposit date: 2007-08-28 Release date: 2008-05-13 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structures of the N-terminal kinase domain of human RSK1 bound to three different ligands: Implications for the design of RSK1 specific inhibitors. Protein Sci., 16, 2007
6X2O	Crystal Structure of unliganded CRM1(E571K)-Ran-RanBP1 Descriptor: Exportin-1, GTP-binding nuclear protein Ran, MAGNESIUM ION, ... Authors: Baumhardt, J.M. Deposit date: 2020-05-20 Release date: 2020-07-01 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.551 Å) Cite: Recognition of nuclear export signals by CRM1 carrying the oncogenic E571K mutation. Mol.Biol.Cell, 31, 2020
1UJR	Solution structure of WWE domain in BAB28015 Descriptor: hypothetical protein AK012080 Authors: He, F, Muto, Y, Hamana, H, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Kobayashi, N, Tanaka, A, Osanai, T, Matsuo, Y, Ohara, O, Nagase, T, Kikuno, R, Nagayama, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-08-11 Release date: 2004-10-05 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Solution structure of WWE domain in BAB28015 To be Published
3L3P	Crystal structure of the C-terminal domain of Shigella type III effector IpaH9.8, with a novel domain swap Descriptor: IpaH9.8 Authors: Seyedarabi, A, Sullivan, J.A, Sasakawa, C, Pickersgill, R.W. Deposit date: 2009-12-17 Release date: 2010-09-08 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.2 Å) Cite: A disulfide driven domain swap switches off the activity of Shigella IpaH9.8 E3 ligase Febs Lett., 584, 2010
8F47	Crystal structure of VACV D13 in complex with STK69439 Descriptor: 6,8-dimethoxy-2-methylquinolin-4-amine, FORMIC ACID, Scaffold protein D13 Authors: Subedi, B.P, Garriga, D, Coulibaly, F. Deposit date: 2022-11-10 Release date: 2023-12-13 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structure of scaffolidng protein D13 of Vaccinia Virus in complex with fragments inhibiting A17 binding. To Be Published
1UKX	Solution structure of the RWD domain of mouse GCN2 Descriptor: GCN2 eIF2alpha kinase Authors: Nameki, N, Yoneyama, M, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-09-03 Release date: 2004-08-03 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Solution structure of the RWD domain of the mouse GCN2 protein. Protein Sci., 13, 2004
5E6X	Re-refinement of the Crystal Structure of the Plexin-Semaphorin-Integrin Domain/Hybrid Domain/I-EGF1 Segment from the Human Integrin b2 Subunit Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Integrin beta-2 Authors: Springer, T.A, Sen, M. Deposit date: 2015-10-10 Release date: 2016-03-02 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Leukocyte integrin alpha L beta 2 headpiece structures: The alpha I domain, the pocket for the internal ligand, and concerted movements of its loops. Proc.Natl.Acad.Sci.USA, 113, 2016
3U2Q	EF-Tu (Escherichia coli) in complex with NVP-LFF571 Descriptor: Elongation factor Tu 1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... Authors: Palestrant, D.J. Deposit date: 2011-10-04 Release date: 2012-05-02 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Discovery of LFF571: an investigational agent for Clostridium difficile infection. J.Med.Chem., 55, 2012
6U75	Crystal Structure of S. Cerevisiae SUMO E3 Ligase SIZ2 Descriptor: E3 SUMO-protein ligase SIZ2, ZINC ION Authors: Lima, C.D, Cappadocia, L. Deposit date: 2019-08-31 Release date: 2020-10-28 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.63 Å) Cite: DNA asymmetry promotes SUMO modification of the single-stranded DNA-binding protein RPA. Embo J., 40, 2021
6UD7	Crystal structure of full-length human DCAF15-DDB1(deltaBPB)-DDA1-RBM39 in complex with indisulam Descriptor: DDB1- and CUL4-associated factor 15, DET1- and DDB1-associated protein 1, DNA damage-binding protein 1,DNA damage-binding protein 1, ... Authors: Bussiere, D.E, Shu, W, Xie, L, Knapp, M. Deposit date: 2019-09-18 Release date: 2019-12-18 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis of indisulam-mediated RBM39 recruitment to DCAF15 E3 ligase complex. Nat.Chem.Biol., 16, 2020
8USP	Structural and biochemical investigations of a HEAT-repeat protein involved in the cytosolic iron-sulfur cluster assembly pathway Descriptor: DNA repair/transcription protein MET18/MMS19 Authors: Vasquez, S, Drennan, C.L. Deposit date: 2023-10-28 Release date: 2023-12-27 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural and biochemical investigations of a HEAT-repeat protein involved in the cytosolic iron-sulfur cluster assembly pathway. Commun Biol, 6, 2023
8USQ	Structural and biochemical investigations of a HEAT-repeat protein involved in the cytosolic iron-sulfur cluster assembly pathway Descriptor: DNA repair/transcription protein MET18/MMS19 Authors: Vasquez, S, Drennan, C.L. Deposit date: 2023-10-29 Release date: 2023-12-27 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (12.77 Å) Cite: Structural and biochemical investigations of a HEAT-repeat protein involved in the cytosolic iron-sulfur cluster assembly pathway. Commun Biol, 6, 2023
5E6V	Re-refinement of the Crystal Structure of the Plexin-Semaphorin-Integrin Domain/Hybrid Domain/I-EGF1 Segment from the Human Integrin b2 Subunit Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Integrin beta-2 Authors: Sen, M, Springer, T.A. Deposit date: 2015-10-10 Release date: 2016-03-02 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Leukocyte integrin alpha L beta 2 headpiece structures: The alpha I domain, the pocket for the internal ligand, and concerted movements of its loops. Proc.Natl.Acad.Sci.USA, 113, 2016
4QIR	Crystal structure of Aminopeptidase N in complex with the phosphinic dipeptide analogue LL-(R,S)-2-(pyridin-3-yl)ethylGlyP[CH2]Phe Descriptor: 3-{[(R)-1-amino-3-(pyridin-3-yl)propyl](hydroxy)phosphoryl}-(S)-2-benzylpropanoic acid, Aminopeptidase N, GLYCEROL, ... Authors: Nocek, B, Joachimiak, A, Berlicki, L, Vassiliou, S, Mucha, A. Deposit date: 2014-06-01 Release date: 2014-09-24 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.701 Å) Cite: Structure-guided, single-point modifications in the phosphinic dipeptide structure yield highly potent and selective inhibitors of neutral aminopeptidases. J.Med.Chem., 57, 2014
3A8G	Crystal structure of Nitrile Hydratase mutant S113A complexed with Trimethylacetonitrile Descriptor: 2,2-dimethylpropanenitrile, FE (III) ION, MAGNESIUM ION, ... Authors: Yamanaka, Y, Hashimoto, K, Ohtaki, A, Noguchi, K, Yohda, M, Odaka, M. Deposit date: 2009-10-06 Release date: 2010-04-14 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.11 Å) Cite: Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase J.Biol.Inorg.Chem., 15, 2010

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