PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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3JBP	Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein eS1, ... Authors: Sun, M, Li, W, Blomqvist, K, Das, S, Hashem, Y, Dvorin, J.D, Frank, J. Deposit date: 2015-09-16 Release date: 2015-10-14 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (6.7 Å) Cite: Dynamical features of the Plasmodium falciparum ribosome during translation. Nucleic Acids Res., 43, 2015
3JBN	Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein eS1, ... Authors: Sun, M, Li, W, Blomqvist, K, Das, S, Hashem, Y, Dvorin, J.D, Frank, J. Deposit date: 2015-09-16 Release date: 2015-10-14 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (4.7 Å) Cite: Dynamical features of the Plasmodium falciparum ribosome during translation. Nucleic Acids Res., 43, 2015
4M5D	Crystal structure of the Utp22 and Rrp7 complex from Saccharomyces cerevisiae Descriptor: Ribosomal RNA-processing protein 7, SULFATE ION, TRIETHYLENE GLYCOL, ... Authors: Lin, J, Ye, K. Deposit date: 2013-08-08 Release date: 2013-11-06 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.97 Å) Cite: An RNA-Binding Complex Involved in Ribosome Biogenesis Contains a Protein with Homology to tRNA CCA-Adding Enzyme. Plos Biol., 11, 2013
8D6J	Human Ago2 bound to miR122(21nt) with PIWI loop swapped to AtAgo10 sequence Descriptor: MAGNESIUM ION, Protein argonaute-2, RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*UP*U)-3') Authors: Xiao, Y, MacRae, I. Deposit date: 2022-06-06 Release date: 2023-05-03 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.5 Å) Cite: A tiny loop in the Argonaute PIWI domain tunes small RNA seed strength. Embo Rep., 24, 2023
3J80	CryoEM structure of 40S-eIF1-eIF1A preinitiation complex Descriptor: 18S rRNA, MAGNESIUM ION, RACK1, ... Authors: Hussain, T, Llacer, J.L, Fernandez, I.S, Savva, C.G, Ramakrishnan, V. Deposit date: 2014-08-28 Release date: 2014-11-05 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (3.75 Å) Cite: Structural changes enable start codon recognition by the eukaryotic translation initiation complex. Cell(Cambridge,Mass.), 159, 2014
2FK6	Crystal Structure of RNAse Z/tRNA(Thr) complex Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, RIBONUCLEASE Z, ... Authors: Li de la Sierra-Gallay, I, Mathy, N, Pellegrini, O, Condon, C. Deposit date: 2006-01-04 Release date: 2006-03-21 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structure of the ubiquitous 3' processing enzyme RNase Z bound to transfer RNA. Nat.Struct.Mol.Biol., 13, 2006
4TYY	DEAD-box helicase Mss116 bound to ssRNA and CDP-BeF Descriptor: ATP-dependent RNA helicase MSS116, mitochondrial, BERYLLIUM TRIFLUORIDE ION, ... Authors: Mallam, A.L, Sidote, D.J, Lambowitz, A.M. Deposit date: 2014-07-09 Release date: 2014-12-31 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.74 Å) Cite: Molecular insights into RNA and DNA helicase evolution from the determinants of specificity for a DEAD-box RNA helicase. Elife, 3, 2014
4TYW	DEAD-box helicase Mss116 bound to ssRNA and ADP-BeF Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase MSS116, mitochondrial, ... Authors: Mallam, A.L, Sidote, D.J, Lambowitz, A.M. Deposit date: 2014-07-09 Release date: 2014-12-31 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.197 Å) Cite: Molecular insights into RNA and DNA helicase evolution from the determinants of specificity for a DEAD-box RNA helicase. Elife, 3, 2014
4TZ6	DEAD-box helicase Mss116 bound to ssRNA and UDP-BeF Descriptor: ATP-dependent RNA helicase MSS116, mitochondrial, BERYLLIUM TRIFLUORIDE ION, ... Authors: Mallam, A.L, Sidote, D.J, Lambowitz, A.M. Deposit date: 2014-07-09 Release date: 2015-01-28 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.209 Å) Cite: Molecular insights into RNA and DNA helicase evolution from the determinants of specificity for a DEAD-box RNA helicase. Elife, 3, 2014
3J7P	Structure of the 80S mammalian ribosome bound to eEF2 Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ... Authors: Voorhees, R.M, Fernandez, I.S, Scheres, S.H.W, Hegde, R.S. Deposit date: 2014-08-01 Release date: 2014-09-03 Last modified: 2018-07-18 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution. Cell(Cambridge,Mass.), 157, 2014
7OF1	Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Milkereit, P, Poell, G. Deposit date: 2021-05-04 Release date: 2021-11-03 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Plos One, 16, 2021
5WNV	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus Descriptor: (1R,2S,3S,4R,6R)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-alpha-L-altropyranosyl)-beta-L-arabinofuranosyl]oxy}-3-hydroxycyclohexyl 2-amino-2-deoxy-alpha-D-allopyranoside, 16S Ribosomal RNA rRNA, 30S ribosomal protein S10, ... Authors: DeMirci, H. Deposit date: 2017-08-01 Release date: 2018-02-21 Last modified: 2020-10-21 Method: X-RAY DIFFRACTION (3.3 Å) Cite: 2'-O-methylation in mRNA disrupts tRNA decoding during translation elongation. Nat. Struct. Mol. Biol., 25, 2018
6OGZ	In situ structure of Rotavirus RNA-dependent RNA polymerase at transcript-elongated state Descriptor: GUANOSINE-5'-TRIPHOSPHATE, Inner capsid protein VP2, RNA (5'-R(P*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*A)-3'), ... Authors: Ding, K, Chang, T, Shen, W, Roy, P, Zhou, Z.H. Deposit date: 2019-04-03 Release date: 2019-05-22 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: In situ structures of rotavirus polymerase in action and mechanism of mRNA transcription and release. Nat Commun, 10, 2019
7ABI	Human pre-Bact-2 spliceosome Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, BUD13 homolog, Beta-catenin-like protein 1, ... Authors: Townsend, C, Kastner, B, Leelaram, M.N, Bertram, K, Stark, H, Luehrmann, R. Deposit date: 2020-09-07 Release date: 2021-02-10 Method: ELECTRON MICROSCOPY (8 Å) Cite: Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation. Science, 370, 2020
3LWP	Structure of H/ACA RNP bound to a substrate RNA containing 5BrdU Descriptor: 5'-R(*GP*AP*GP*CP*GP*(BRU)P*GP*CP*GP*GP*UP*UP*U)-3, 50S ribosomal protein L7Ae, H/ACA RNA, ... Authors: Zhou, J, Liang, B, Lv, C, Yang, W, Li, H. Deposit date: 2010-02-24 Release date: 2010-07-14 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Glycosidic bond conformation preference plays a pivotal role in catalysis of RNA pseudouridylation: a combined simulation and structural study. J.Mol.Biol., 401, 2010
3LWO	Structure of H/ACA RNP bound to a substrate RNA containing 5BrU Descriptor: 5'-R(*GP*AP*GP*CP*GP*(5BU)P*GP*CP*GP*GP*UP*UP*U)-3', 50S ribosomal protein L7Ae, H/ACA RNA, ... Authors: Zhou, J, Liang, B, Lv, C, Yang, W, Li, H. Deposit date: 2010-02-24 Release date: 2010-07-14 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.855 Å) Cite: Glycosidic bond conformation preference plays a pivotal role in catalysis of RNA pseudouridylation: a combined simulation and structural study. J.Mol.Biol., 401, 2010
7AHO	RUVBL1-RUVBL2 heterohexameric ring after binding of RNA helicase DHX34 Descriptor: ADENOSINE-5'-DIPHOSPHATE, RuvB-like 1, RuvB-like 2 Authors: Lopez-Perrote, A, Rodriguez, C.F, Llorca, O. Deposit date: 2020-09-25 Release date: 2020-11-25 Method: ELECTRON MICROSCOPY (4.18 Å) Cite: Regulation of RUVBL1-RUVBL2 AAA-ATPases by the nonsense-mediated mRNA decay factor DHX34, as evidenced by Cryo-EM. Elife, 9, 2020
6HPJ	Structure of human SRSF1 RRM1 bound to AACAAA RNA Descriptor: Immunoglobulin G-binding protein G,Serine/arginine-rich splicing factor 1, RNA (5'-R(*AP*AP*CP*AP*AP*A)-3') Authors: Allain, F.T.H, Clery, A. Deposit date: 2018-09-21 Release date: 2020-11-18 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure of SRSF1 RRM1 bound to RNA reveals an unexpected bimodal mode of interaction and explains its involvement in SMN1 exon7 splicing. Nat Commun, 12, 2021
5DE5	Crystal structure of the complex between human FMRP RGG motif and G-quadruplex RNA. Descriptor: Fragile X mental retardation protein 1, POTASSIUM ION, sc1 Authors: Vasilyev, N, Polonskaia, A, Darnell, J.C, Darnell, R.B, Patel, D.J, Serganov, A. Deposit date: 2015-08-25 Release date: 2015-09-23 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (3.0011 Å) Cite: Crystal structure reveals specific recognition of a G-quadruplex RNA by a beta-turn in the RGG motif of FMRP. Proc.Natl.Acad.Sci.USA, 112, 2015
4WSB	Bat Influenza A polymerase with bound vRNA promoter Descriptor: Influenza A polymerase vRNA promoter 3' end, Influenza A polymerase vRNA promoter 5' end, PHOSPHATE ION, ... Authors: Cusack, S, Pflug, A, Guilligay, D, Reich, S. Deposit date: 2014-10-26 Release date: 2014-11-19 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Structural insight into cap-snatching and RNA synthesis by influenza polymerase. Nature, 516, 2014
4WSA	Crystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form) Descriptor: Influenza B vRNA promoter 3' end, Influenza B vRNA promoter 5' end, PA, ... Authors: Reich, S, Guilligay, D, Pflug, A, Cusack, S. Deposit date: 2014-10-26 Release date: 2014-11-19 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Structural insight into cap-snatching and RNA synthesis by influenza polymerase. Nature, 516, 2014
4WRT	Crystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2) Descriptor: Influenza virus polymerase vRNA promoter 3' end, Influenza virus polymerase vRNA promoter 5' end, PA, ... Authors: Reich, S, Guilligay, D, Pflug, A, Cusack, S. Deposit date: 2014-10-25 Release date: 2014-11-19 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural insight into cap-snatching and RNA synthesis by influenza polymerase. Nature, 516, 2014
6GQE	X-ray structure of KH1-2 domain of IMP3 Descriptor: Insulin-like growth factor 2 mRNA-binding protein 3 Authors: Janowski, R, Schlundt, A, Sattler, M, Niessing, D. Deposit date: 2018-06-07 Release date: 2019-04-24 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Combinatorial recognition of clustered RNA elements by the multidomain RNA-binding protein IMP3. Nat Commun, 10, 2019
5FMZ	Crystal structure of Influenza B polymerase with bound 5' vRNA Descriptor: 5'-R(*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP)-3', POLYMERASE ACIDIC PROTEIN, POLYMERASE BASIC PROTEIN 2, ... Authors: Guilligay, D, Cusack, S. Deposit date: 2015-11-10 Release date: 2016-01-13 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Influenza Polymerase Can Adopt an Alternative Configuration Involving a Radical Repacking of Pb2 Domains. Mol.Cell, 61, 2016
1OLN	Model for thiostrepton antibiotic binding to L11 substrate from 50S ribosomal RNA Descriptor: 50S RIBOSOMAL PROTEIN L11, RNA, THIOSTREPTON Authors: Lentzen, G, Klinck, R, Matassova, N, Aboul-Ela, F, Murchie, A.I.H. Deposit date: 2003-08-08 Release date: 2003-09-11 Last modified: 2019-08-21 Method: SOLUTION NMR, THEORETICAL MODEL Cite: Structural Basis for Contrasting Activities of Ribosome Binding Thiazole Antibiotics Chem.Biol., 10, 2003

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