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5LFY
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BU of 5lfy by Molmil
Zinc bound dimer of the fragment of human amyloid-beta peptide with Alzheimer's disease pathogenic Taiwanese mutation D7H
Descriptor: Amyloid beta A4 protein, ZINC ION
Authors:Polshakov, V.I, Mantsyzov, A.B, Kozin, S.A.
Deposit date:2016-07-05
Release date:2017-08-23
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:A Binuclear Zinc Interaction Fold Discovered in the Homodimer of Alzheimer's Amyloid-beta Fragment with Taiwanese Mutation D7H.
Angew. Chem. Int. Ed. Engl., 56, 2017
6QPS
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BU of 6qps by Molmil
Structural characterization of a mannuronic acid specific polysaccharide family 6 lyase enzyme from human gut microbiota
Descriptor: ACETATE ION, CALCIUM ION, Polysaccharide Lyase Family 6
Authors:Fredslund, F, Stender, E.G.P, Svensson, B, Welner, D.H.
Deposit date:2019-02-14
Release date:2019-09-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.287 Å)
Cite:Structural and functional aspects of mannuronic acid-specific PL6 alginate lyase from the human gut microbeBacteroides cellulosilyticus.
J.Biol.Chem., 294, 2019
6QRX
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BU of 6qrx by Molmil
X-ray radiation dose series on xylose isomerase - 3.88 MGy
Descriptor: 1,2-ETHANEDIOL, ISOPROPYL ALCOHOL, MAGNESIUM ION, ...
Authors:Taberman, H, Bury, C.S, van der Woerd, M.J, Snell, E.H, Garman, E.F.
Deposit date:2019-02-19
Release date:2019-07-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Structural knowledge or X-ray damage? A case study on xylose isomerase illustrating both.
J.Synchrotron Radiat., 26, 2019
6QSC
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BU of 6qsc by Molmil
Crystal Structure of Arg470His mutant of Human Prolidase with Mn ions and GlyPro ligand
Descriptor: GLYCEROL, GLYCINE, MANGANESE (II) ION, ...
Authors:Wilk, P, Wator, E, Weiss, M.S.
Deposit date:2019-02-20
Release date:2020-03-18
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.569 Å)
Cite:Structural analysis of new compound heterozygous variants in PEPD gene identified in a patient with Prolidase Deficiency diagnosed by exome sequencing.
Genet Mol Biol, 44, 2021
2LXC
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BU of 2lxc by Molmil
Solution structure of the complex between the Sgt2 homodimerization domain and the Get5 UBL domain
Descriptor: Small glutamine-rich tetratricopeptide repeat-containing protein 2, Ubiquitin-like protein MDY2
Authors:Chartron, J.W, Vandervelde, D.G, Clemons Jr, W.M.
Deposit date:2012-08-19
Release date:2012-11-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structures of the Sgt2/SGTA Dimerization Domain with the Get5/UBL4A UBL Domain Reveal an Interaction that Forms a Conserved Dynamic Interface.
Cell Rep, 2, 2012
6S2E
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BU of 6s2e by Molmil
Cryo-EM structure of Ctf18-1-8 in complex with the catalytic domain of DNA polymerase epsilon
Descriptor: Chromosome transmission fidelity protein 18, Chromosome transmission fidelity protein 8, DNA polymerase epsilon catalytic subunit A, ...
Authors:Grabarczyk, D.B, Song, B.
Deposit date:2019-06-20
Release date:2020-07-08
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Ctf18-RFC and DNA Pol ε form a stable leading strand polymerase/clamp loader complex required for normal and perturbed DNA replication.
Nucleic Acids Res., 48, 2020
6RO4
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BU of 6ro4 by Molmil
Structure of the core TFIIH-XPA-DNA complex
Descriptor: DNA repair protein complementing XP-A cells, DNA1, DNA2, ...
Authors:Kokic, G, Chernev, A, Tegunov, D, Dienemann, C, Urlaub, H, Cramer, P.
Deposit date:2019-05-10
Release date:2019-07-03
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural basis of TFIIH activation for nucleotide excision repair.
Nat Commun, 10, 2019
2MKB
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BU of 2mkb by Molmil
Structure of NS2(113-137) GBVB protein
Descriptor: Protease NS2-3
Authors:Montserret, R, Martin, A, Penin, F.
Deposit date:2014-02-04
Release date:2014-05-07
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NS2 Proteins of GB Virus B and Hepatitis C Virus Share Common Protease Activities and Membrane Topologies.
J.Virol., 88, 2014
2MKL
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BU of 2mkl by Molmil
Solution structure of the fourth constant immunoglobulin domain of nurse shark IgNAR
Descriptor: Novel antigen receptor
Authors:Hennig, J, Sattler, M.
Deposit date:2014-02-10
Release date:2014-07-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The structural analysis of shark IgNAR antibodies reveals evolutionary principles of immunoglobulins.
Proc.Natl.Acad.Sci.USA, 111, 2014
2M3X
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BU of 2m3x by Molmil
Solution structure of Ph1500: a homohexameric protein centered on a 12-bladed beta-propeller
Descriptor: PH1500
Authors:Varnay, I, Truffault, V, Kessler, H, Coles, M.
Deposit date:2013-01-28
Release date:2014-01-29
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of Ph1500: a homohexameric protein centered on a 12-bladed beta-propeller
To be Published
5LCU
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BU of 5lcu by Molmil
Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with a S-methyl-piperazine substituted Fasudil-derivative (Ligand 01)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1-(5-ISOQUINOLINESULFONYL)-2-METHYLPIPERAZINE, METHANOL, ...
Authors:Wienen-Schmidt, B, Heine, A, Klebe, G.
Deposit date:2016-06-22
Release date:2018-01-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.579 Å)
Cite:Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with different Fasudil-derivatives
To Be Published
2LX4
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BU of 2lx4 by Molmil
NMR solution structure of peptide a2N(1-17) from Mus musculus V-ATPase
Descriptor: V-type proton ATPase 116 kDa subunit a isoform 2
Authors:Dip, P, Gruber, G, Marshansky, V.
Deposit date:2012-08-14
Release date:2013-01-09
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The N Termini of a-Subunit Isoforms Are Involved in Signaling between Vacuolar H+-ATPase (V-ATPase) and Cytohesin-2.
J.Biol.Chem., 288, 2013
5LDF
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BU of 5ldf by Molmil
Maltose binding protein genetically fused to dodecameric glutamine synthetase
Descriptor: Glutamine synthetase, Maltose-binding periplasmic protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Coscia, F, Petosa, C, Schoehn, G.
Deposit date:2016-06-25
Release date:2016-08-10
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (6.2 Å)
Cite:Fusion to a homo-oligomeric scaffold allows cryo-EM analysis of a small protein.
Sci Rep, 6, 2016
6RIP
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BU of 6rip by Molmil
Cryo-EM structure of E. coli RNA polymerase backtracked elongation complex in swiveled state
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Abdelkareem, M, Saint-Andre, C, Takacs, M, Papai, G, Crucifix, C, Guo, X, Ortiz, J, Weixlbaumer, A.
Deposit date:2019-04-24
Release date:2019-07-03
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural Basis of Transcription: RNA Polymerase Backtracking and Its Reactivation.
Mol.Cell, 75, 2019
2LZZ
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BU of 2lzz by Molmil
Solution structure of a mutant of the triheme cytochrome PpcA from Geobacter sulfurreducens sheds light on the role of the conserved aromatic residue F15
Descriptor: Cytochrome c, 3 heme-binding sites, PROTOPORPHYRIN IX CONTAINING FE
Authors:Dantas, J.M, Morgado, L, Turner, D.L, Salgueiro, C.A.
Deposit date:2012-10-12
Release date:2013-01-30
Last modified:2013-03-13
Method:SOLUTION NMR
Cite:Solution structure of a mutant of the triheme cytochrome PpcA from Geobacter sulfurreducens sheds light on the role of the conserved aromatic residue F15.
Biochim.Biophys.Acta, 1827, 2013
5LI7
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BU of 5li7 by Molmil
Crystal structure of Mycobacterium tuberculosis CYP126A1 in complex with 1-(3-(1H-imidazol-1-yl)propyl)-3-((3s,5s,7s)-adamantan-1-yl)urea
Descriptor: 1-(1-adamantyl)-3-(3-imidazol-1-ylpropyl)urea, PROTOPORPHYRIN IX CONTAINING FE, Putative cytochrome P450 126
Authors:Levy, C, Munro, A.W, Leys, D.
Deposit date:2016-07-14
Release date:2016-12-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structural Characterization and Ligand/Inhibitor Identification Provide Functional Insights into the Mycobacterium tuberculosis Cytochrome P450 CYP126A1.
J. Biol. Chem., 292, 2017
6R0K
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BU of 6r0k by Molmil
X-ray structure of Danio rerio histone deacetylase 6 (HDAC6) CD2 in complex with a inhibitor SS208
Descriptor: 5-[2-[(3,4-dichlorophenyl)carbonylamino]ethyl]-~{N}-oxidanyl-1,2-oxazole-3-carboxamide, Histone deacetylase 6, POTASSIUM ION, ...
Authors:Barinka, C, Ustinova, K, Motlova, L, Pavlicek, J.
Deposit date:2019-03-13
Release date:2019-10-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Discovery of a New Isoxazole-3-hydroxamate-Based Histone Deacetylase 6 Inhibitor SS-208 with Antitumor Activity in Syngeneic Melanoma Mouse Models.
J.Med.Chem., 62, 2019
5LM3
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BU of 5lm3 by Molmil
Plasmodium falciparum nicotinic acid mononucleotide adenylyltransferase complexed with APC
Descriptor: 1,2-ETHANEDIOL, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, Nicotinate-nucleotide adenylyltransferase
Authors:Bathke, J, Fritz-Wolf, K, Rahlfs, S, Brandstaether, C, Burkhardt, A, Becker, K.
Deposit date:2016-07-29
Release date:2016-11-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and Functional Characterization of Plasmodium falciparum Nicotinic Acid Mononucleotide Adenylyltransferase.
J. Mol. Biol., 428, 2016
5LKA
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BU of 5lka by Molmil
Crystal structure of haloalkane dehalogenase LinB 140A+143L+177W+211L mutant (LinB86) from Sphingobium japonicum UT26 at 1.3 A resolution
Descriptor: Haloalkane dehalogenase, THIOCYANATE ION
Authors:Degtjarik, O, Rezacova, P, Iermak, I, Chaloupkova, R, Damborsky, J, Kuta Smatanova, I.
Deposit date:2016-07-21
Release date:2016-10-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.298 Å)
Cite:Engineering a de novo transport tunnel.
Acs Catalysis, 2016
2MC7
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BU of 2mc7 by Molmil
Structure of Salmonella MgtR
Descriptor: Regulatory peptide
Authors:Jean-Francois, F, Dai, J, Yu, L, Myrick, A, Rubin, E, Fajer, P, Song, L, Zhou, H, Cross, T.
Deposit date:2013-08-15
Release date:2013-10-30
Last modified:2024-05-01
Method:SOLID-STATE NMR
Cite:Binding of MgtR, a Salmonella Transmembrane Regulatory Peptide, to MgtC, a Mycobacterium tuberculosis Virulence Factor: A Structural Study.
J.Mol.Biol., 426, 2014
5LKI
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BU of 5lki by Molmil
Cryo-EM structure of the Tc toxin TcdA1 in its pore state
Descriptor: TcdA1
Authors:Gatsogiannis, C, Merino, F, Prumbaum, D, Roderer, D, Leidreiter, F, Meusch, D, Raunser, S.
Deposit date:2016-07-22
Release date:2016-08-31
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.46 Å)
Cite:Membrane insertion of a Tc toxin in near-atomic detail.
Nat.Struct.Mol.Biol., 23, 2016
5LLS
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BU of 5lls by Molmil
Porcine dipeptidyl peptidase IV in complex with 8-(3-aminopiperidin-1-yl)-7-[(2-bromophenyl)methyl]-1,3-dimethyl-2,3,6,7-tetrahydro-1H-purine-2,6-dione
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 8-[(3~{R})-3-azanylpiperidin-1-yl]-7-[(2-bromophenyl)methyl]-1,3-dimethyl-purine-2,6-dione, ...
Authors:Nar, H, Blaesse, M.
Deposit date:2016-07-28
Release date:2016-09-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Comparative Analysis of Binding Kinetics and Thermodynamics of Dipeptidyl Peptidase-4 Inhibitors and Their Relationship to Structure.
J.Med.Chem., 59, 2016
2MEG
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BU of 2meg by Molmil
CHANGES IN CONFORMATIONAL STABILITY OF A SERIES OF MUTANT HUMAN LYSOZYMES AT CONSTANT POSITIONS.
Descriptor: LYSOZYME, SODIUM ION
Authors:Funahashi, J, Takano, K, Yamagata, Y, Yutani, K.
Deposit date:1998-05-02
Release date:1998-07-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of amino acid substitutions at two different interior positions to the conformational stability of human lysozyme
Protein Eng., 12, 1999
6RFL
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BU of 6rfl by Molmil
Structure of the complete Vaccinia DNA-dependent RNA polymerase complex
Descriptor: DNA-dependent RNA polymerase subunit rpo132, DNA-dependent RNA polymerase subunit rpo147, DNA-dependent RNA polymerase subunit rpo18, ...
Authors:Grimm, C, Hillen, S.H, Bedenk, K, Bartuli, J, Neyer, S, Zhang, Q, Huettenhofer, A, Erlacher, M, Dienemann, C, Schlosser, A, Urlaub, H, Boettcher, B, Szalay, A.A, Cramer, P, Fischer, U.
Deposit date:2019-04-15
Release date:2019-12-11
Last modified:2019-12-25
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Structural Basis of Poxvirus Transcription: Vaccinia RNA Polymerase Complexes.
Cell, 179, 2019
5LNI
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BU of 5lni by Molmil
XenA - oxidized - Y183F variant in complex with 7-hydroxycoumarin
Descriptor: 7-hydroxy-2H-chromen-2-one, FLAVIN MONONUCLEOTIDE, GLYCEROL, ...
Authors:Werther, T, Dobbek, H.
Deposit date:2016-08-04
Release date:2017-08-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.133 Å)
Cite:Redox-dependent substrate-cofactor interactions in the Michaelis-complex of a flavin-dependent oxidoreductase
Nat Commun, 8, 2017

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