PDB: 26892 resultsInfo pagesStatus searchChemie searchBIRD

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2ZR3	Crystal structure of seryl-tRNA synthetase from Pyrococcus horikoshii Descriptor: Seryl-tRNA synthetase Authors: Itoh, Y, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2008-08-22 Release date: 2008-09-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii. Rna Biol., 5, 2008
8DWH	CryoEM structure of Gq-coupled MRGPRX1 with ligand Compound-16 Descriptor: Gs-mini-Gq chimera, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ... Authors: Liu, Y, Cao, C, Fay, J.F, Roth, B.L. Deposit date: 2022-08-01 Release date: 2022-11-02 Last modified: 2023-04-12 Method: ELECTRON MICROSCOPY (3.25 Å) Cite: Ligand recognition and allosteric modulation of the human MRGPRX1 receptor. Nat.Chem.Biol., 19, 2023
3B6J	WrbA from Escherichia coli, NADH complex Descriptor: ADENOSINE MONOPHOSPHATE, FLAVIN MONONUCLEOTIDE, Flavoprotein wrbA, ... Authors: Andrade, S.L.A, Patridge, E.V, Ferry, J.G, Einsle, O. Deposit date: 2007-10-29 Release date: 2007-12-11 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Crystal structure of the NADH:quinone oxidoreductase WrbA from Escherichia coli. J.Bacteriol., 189, 2007
8DWC	CryoEM structure of Gq-coupled MRGPRX1 with peptide agonist BAM8-22 Descriptor: Gs-mini-Gq chimera, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ... Authors: Liu, Y, Cao, C, Fay, J.F, Roth, B.L. Deposit date: 2022-08-01 Release date: 2022-11-02 Last modified: 2023-04-12 Method: ELECTRON MICROSCOPY (2.87 Å) Cite: Ligand recognition and allosteric modulation of the human MRGPRX1 receptor. Nat.Chem.Biol., 19, 2023
8DWG	CryoEM structure of Gq-coupled MRGPRX1 with peptide ligand BAM8-22 and positive allosteric modulator ML382 Descriptor: 2-[(cyclopropanesulfonyl)amino]-N-(2-ethoxyphenyl)benzamide, Gs-mini-Gq chimera, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... Authors: Liu, Y, Cao, C, Fay, J.F, Roth, B.L. Deposit date: 2022-08-01 Release date: 2022-11-02 Last modified: 2023-04-12 Method: ELECTRON MICROSCOPY (2.71 Å) Cite: Ligand recognition and allosteric modulation of the human MRGPRX1 receptor. Nat.Chem.Biol., 19, 2023
8E3Z	Cryo-EM structure of the VPAC1R-VIP-Gs complex Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ... Authors: Piper, S.J, Danev, R, Sexton, P, Wootten, D. Deposit date: 2022-08-17 Release date: 2022-11-23 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Understanding VPAC receptor family peptide binding and selectivity. Nat Commun, 13, 2022
8E3Y	Cryo-EM structure of the VPAC1R-PACAP27-Gs complex Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ... Authors: Piper, S.J, Danev, R, Sexton, P, Wootten, D. Deposit date: 2022-08-17 Release date: 2022-11-23 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (2.3 Å) Cite: Understanding VPAC receptor family peptide binding and selectivity. Nat Commun, 13, 2022
7Y5K	Crystal structure of human CAF-1 core complex in spacegroup C2221 Descriptor: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, GLYCEROL, ... Authors: Liu, C.P, Wang, M.Z, Xu, R.M. Deposit date: 2022-06-17 Release date: 2023-08-16 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.48 Å) Cite: Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1. Science, 381, 2023
7Y61	Cryo-EM structure of the two CAF1LCs bound right-handed Di-tetrasome Descriptor: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, Histone H3.1, ... Authors: Liu, C.P, Yu, Z.Y, Yu, C, Xu, R.M. Deposit date: 2022-06-18 Release date: 2023-08-16 Last modified: 2023-09-06 Method: ELECTRON MICROSCOPY (5.6 Å) Cite: Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1. Science, 381, 2023
7Y5V	Cryo-EM structure of the dimeric human CAF1LC-H3-H4 complex Descriptor: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, Histone H3.1, ... Authors: Liu, C.P, Yu, C, Yu, Z.Y, Xu, R.M. Deposit date: 2022-06-17 Release date: 2023-08-16 Last modified: 2023-09-06 Method: ELECTRON MICROSCOPY (6.1 Å) Cite: Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1. Science, 381, 2023
7Y5O	Crystal structure of human CAF-1 core complex in spacegroup P21 Descriptor: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, GLYCEROL, ... Authors: Liu, C.P, Wang, M.Z, Xu, R.M. Deposit date: 2022-06-17 Release date: 2023-08-16 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.57 Å) Cite: Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1. Science, 381, 2023
7Y5U	Cryo-EM structure of the monomeric human CAF1LC-H3-H4 complex Descriptor: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, Histone H3.1, ... Authors: Liu, C.P, Yu, Z.Y, Yu, C, Xu, R.M. Deposit date: 2022-06-17 Release date: 2023-08-16 Last modified: 2023-09-06 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1. Science, 381, 2023
7Y60	Cryo-EM structure of human CAF1LC bound right-handed Di-tetrasome Descriptor: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, Histone H3.1, ... Authors: Liu, C.P, Yu, C, Yu, Z.Y, Xu, R.M. Deposit date: 2022-06-18 Release date: 2023-08-16 Last modified: 2023-09-06 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1. Science, 381, 2023
7Y5L	Crystal structure of human CAF-1 core complex in spacegroup C2 Descriptor: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, GLYCEROL, ... Authors: Liu, C.P, Wang, M.Z, Xu, R.M. Deposit date: 2022-06-17 Release date: 2023-08-16 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.42 Å) Cite: Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1. Science, 381, 2023
7YFC	Cryo-EM structure of the histamine-bound histamine H4 receptor and Gq complex Descriptor: CHOLESTEROL, Engineered G-alpha-q, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... Authors: Im, D, Iwata, S, Asada, H. Deposit date: 2022-07-08 Release date: 2023-10-25 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural insights into the agonists binding and receptor selectivity of human histamine H 4 receptor. Nat Commun, 14, 2023
8E9F	WD repeat-containing protein 5 complexed with 4-(7-((1H-imidazol-1-yl)methyl)-5-(1-methyl-3-(trifluoromethyl)-1H-pyrazol-4-yl)-1-oxo-3,4-dihydroisoquinolin-2(1H)-yl)-6-ethyl-N-methylquinoline-8-carboxamide (compound 10) Descriptor: 6-ethyl-4-[(5P)-7-[(1H-imidazol-1-yl)methyl]-5-[1-methyl-3-(trifluoromethyl)-1H-pyrazol-4-yl]-1-oxo-3,4-dihydroisoquinolin-2(1H)-yl]-N-methylquinoline-8-carboxamide, BENZAMIDINE, WD repeat-containing protein 5 Authors: Rietz, T.A, Fesik, S.W. Deposit date: 2022-08-26 Release date: 2023-01-11 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Structure-based discovery of potent WD repeat domain 5 inhibitors that demonstrate efficacy and safety in preclinical animal models. Proc.Natl.Acad.Sci.USA, 120, 2023
8DYV	Structure of human cytoplasmic dynein-1 bound to one Lis1 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cytoplasmic dynein 1 heavy chain 1, ... Authors: Reimer, J.M, DeSantis, M, Reck-Peterson, S.L, Leschziner, A.E. Deposit date: 2022-08-05 Release date: 2023-02-01 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.97 Å) Cite: Structures of human dynein in complex with the lissencephaly 1 protein, LIS1. Elife, 12, 2023
8DQU	Nanobody bound SARS-CoV-2 Nsp9 Descriptor: Nanobody, Non-structural protein 9 Authors: Littler, D.R, Gully, B.S, Rossjohn, J. Deposit date: 2022-07-20 Release date: 2023-02-08 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.45003176 Å) Cite: Inside-out: Antibody-binding reveals potential folding hinge-points within the SARS-CoV-2 replication co-factor nsp9. Plos One, 18, 2023
8DYU	Structure of human cytoplasmic dynein-1 bound to two Lis1 proteins Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cytoplasmic dynein 1 heavy chain 1, ... Authors: Reimer, J.M, DeSantis, M, Reck-Peterson, S.L, Leschziner, A.E. Deposit date: 2022-08-05 Release date: 2023-02-01 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structures of human dynein in complex with the lissencephaly 1 protein, LIS1. Elife, 12, 2023
8AUV	Cryo-EM structure of the plant 40S subunit Descriptor: 18S rRNA, MAGNESIUM ION, POTASSIUM ION, ... Authors: Smirnova, J, Loerke, J, Kleinau, G, Schmidt, A, Buerger, J, Meyer, E.H, Mielke, T, Scheerer, P, Bock, R, Spahn, C.M.T, Zoschke, R. Deposit date: 2022-08-25 Release date: 2023-06-07 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.38 Å) Cite: Structure of the actively translating plant 80S ribosome at 2.2 angstrom resolution. Nat.Plants, 9, 2023
8E5T	Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate Descriptor: 25S ribosomal RNA, 5.8S ribosomal RNA, 60S ribosomal protein L13-A, ... Authors: Sanghai, Z.A, Piwowarczyk, R, Vanden Broeck, A, Klinge, S. Deposit date: 2022-08-22 Release date: 2023-04-12 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (4 Å) Cite: A co-transcriptional ribosome assembly checkpoint controls nascent large ribosomal subunit maturation. Nat.Struct.Mol.Biol., 30, 2023
8ARL	Plasmodium vivax PVP01_0000100 TRAg domain Descriptor: Tryptophan-rich antigen Authors: Kundu, P, Deane, J.E, Rayner, J.C. Deposit date: 2022-08-17 Release date: 2023-07-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.45 Å) Cite: The structure of a Plasmodium vivax Tryptophan Rich Antigen domain suggests a lipid binding function for a pan-Plasmodium multi-gene family. Nat Commun, 14, 2023
6HDT	crystal structure of short afifavidin - biotin complex Descriptor: BIOTIN, Short afifavidin Authors: Livnah, O, Avraham, O. Deposit date: 2018-08-19 Release date: 2018-11-14 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.54 Å) Cite: Crystal structure of afifavidin reveals common features of molecular assemblage in the bacterial dimeric avidins. FEBS J., 285, 2018
8B2L	Cryo-EM structure of the plant 80S ribosome Descriptor: 18S rRNA, 25S rRNA, 30S ribosomal protein S15, ... Authors: Smirnova, J, Loerke, J, Kleinau, G, Schmidt, A, Buerger, J, Meyer, E.H, Mielke, T, Scheerer, P, Bock, R, Spahn, C.M.T, Zoschke, R. Deposit date: 2022-09-14 Release date: 2023-08-23 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.2 Å) Cite: Structure of the actively translating plant 80S ribosome at 2.2 angstrom resolution. Nat.Plants, 9, 2023
6HDS	Crystal Structure of apo short afifavidin Descriptor: short afifavidin Authors: Livnah, O, Avraham, O. Deposit date: 2018-08-19 Release date: 2018-11-14 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.74 Å) Cite: Crystal structure of afifavidin reveals common features of molecular assemblage in the bacterial dimeric avidins. FEBS J., 285, 2018

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