PDB: 8880 resultsInfo pagesStatus searchChemie searchBIRD

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7WLR	Cryo-EM structure of the nucleosome containing Komagataella pastoris histones Descriptor: DNA (145-MER), Histone H2A, Histone H2B, ... Authors: Fukushima, Y, Hatazawa, S, Hirai, S, Kujirai, T, Takizawa, Y, Kurumizaka, H. Deposit date: 2022-01-13 Release date: 2022-07-13 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.54 Å) Cite: Structural and biochemical analyses of the nucleosome containing Komagataella pastoris histones. J.Biochem., 172, 2022
2NPI	Clp1-ATP-Pcf11 complex Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Protein CLP1, ... Authors: Noble, C.G, Beuth, B, Taylor, I.A. Deposit date: 2006-10-27 Release date: 2006-12-19 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Structure of a nucleotide-bound Clp1-Pcf11 polyadenylation factor Nucleic Acids Res., 35, 2007
6EKM	Crystal structure of mammalian Rev7 in complex with human Rev3 second binding site Descriptor: DNA polymerase zeta catalytic subunit, Mitotic spindle assembly checkpoint protein MAD2B Authors: Huber, F, Tropia, L, Emamzadah, S, Halazonetis, T. Deposit date: 2017-09-26 Release date: 2018-10-10 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.76 Å) Cite: Crystal structure of mammalian Rev7 in complex with human Rev3 To Be Published
3PY3	Crystal structure of phosphorylated p38alpha MAP kinase Descriptor: Mitogen-activated protein kinase 14 Authors: Zhang, Y.Y, Wu, J.W, Wang, Z.X. Deposit date: 2010-12-11 Release date: 2011-03-16 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Mitogen-activated Protein Kinase (MAPK) Phosphatase 3-mediated Cross-talk between MAPKs ERK2 and p38{alpha}. J.Biol.Chem., 286, 2011
2C9O	3D Structure of the human RuvB-like helicase RuvBL1 Descriptor: ADENOSINE-5'-DIPHOSPHATE, RUVB-LIKE 1 Authors: Matias, P.M, Gorynia, S, Donner, P, Carrondo, M.A. Deposit date: 2005-12-14 Release date: 2006-10-23 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of the human AAA+ protein RuvBL1. J. Biol. Chem., 281, 2006
1UET	Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure Descriptor: ACETATE ION, CALCIUM ION, MAGNESIUM ION, ... Authors: Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-05-21 Release date: 2003-12-02 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure. Embo J., 22, 2003
8SNB	atomic model of sea urchin sperm doublet microtubule (48-nm periodicity) Descriptor: ATP6V1FNB, C20Orf85, C4orf45, ... Authors: Zeng, J, Zhang, R. Deposit date: 2023-04-26 Release date: 2023-06-28 Last modified: 2024-09-11 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural specializations of the sperm tail. Cell, 186, 2023
1UEU	Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure Descriptor: ACETATE ION, CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-05-21 Release date: 2003-12-02 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure. Embo J., 22, 2003
3OXL	Human lysine methyltransferase Smyd3 in complex with AdoHcy (Form II) Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, SET and MYND domain-containing protein 3, ZINC ION Authors: Xu, S, Wu, J, Sun, B, Zhong, C, Ding, J. Deposit date: 2010-09-21 Release date: 2011-02-23 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structural and biochemical studies of human lysine methyltransferase Smyd3 reveal the important functional roles of its post-SET and TPR domains and the regulation of its activity by DNA binding Nucleic Acids Res., 39, 2011
7UQK	Cryo-EM structure of the S. cerevisiae chromatin remodeler Yta7 hexamer bound to ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase histone chaperone YTA7 Authors: Wang, F, Feng, X, Li, H. Deposit date: 2022-04-19 Release date: 2023-02-01 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: The Saccharomyces cerevisiae Yta7 ATPase hexamer contains a unique bromodomain tier that functions in nucleosome disassembly. J.Biol.Chem., 299, 2022
7UQI	Cryo-EM structure of the S. cerevisiae chromatin remodeler Yta7 hexamer bound to ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase histone chaperone YTA7 Authors: Wang, F, Feng, X, Li, H. Deposit date: 2022-04-19 Release date: 2023-02-01 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: The Saccharomyces cerevisiae Yta7 ATPase hexamer contains a unique bromodomain tier that functions in nucleosome disassembly. J.Biol.Chem., 299, 2022
3O96	Crystal Structure of Human AKT1 with an Allosteric Inhibitor Descriptor: 1-(1-(4-(7-phenyl-1H-imidazo[4,5-g]quinoxalin-6-yl)benzyl)piperidin-4-yl)-1H-benzo[d]imidazol-2(3H)-one, RAC-alpha serine/threonine-protein kinase Authors: Voegtli, W.C, Wu, W.-I, Lord-Ondash, H.A, Dizon, F.P, Vigers, G.P.A, Brandhuber, B.J. Deposit date: 2010-08-03 Release date: 2010-10-13 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structure of human AKT1 with an allosteric inhibitor reveals a new mode of kinase inhibition. Plos One, 5, 2010
2YOL	West Nile Virus NS2B-NS3 protease in complex with 3,4- dichlorophenylacetyl-Lys-Lys-GCMA Descriptor: (S)-6-amino-N-((S)-6-amino-1-(((1r,4S)-4-guanidinocyclohexyl)methylamino)-1-oxohexan-2-yl)-2-(2-(3,4-dichlorophenyl)acetamido)hexanamide, CHLORIDE ION, NICKEL (II) ION, ... Authors: Hammamy, M.Z, Haase, C, Hammami, M, Hilgenfeld, R, Steinmetzer, T. Deposit date: 2012-10-25 Release date: 2013-03-27 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Development and Characterization of New Peptidomimetic Inhibitors of the West Nile Virus Ns2B-Ns3 Protease. Chemmedchem, 8, 2013
3P57	Crystal structure of the p300 TAZ2 domain bound to MEF2 on DNA Descriptor: DNA (5'-D(*A*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*GP*A)-3'), DNA (5'-D(*TP*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*TP*T)-3'), Histone acetyltransferase p300, ... Authors: He, J, Ye, J, Riquelme, C, Liu, J.O. Deposit date: 2010-10-08 Release date: 2011-08-10 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.1921 Å) Cite: Structure of p300 bound to MEF2 on DNA reveals a mechanism of enhanceosome assembly. Nucleic Acids Res., 39, 2011
5VFT	Nucleotide-driven Triple-state Remodeling of the AAA-ATPase Channel in the Activated Human 26S Proteasome Descriptor: 26S proteasome non-ATPase regulatory subunit 1, 26S proteasome non-ATPase regulatory subunit 11, 26S proteasome non-ATPase regulatory subunit 12, ... Authors: Zhu, Y, Wang, W.L, Yu, D, Ouyang, Q, Lu, Y, Mao, Y. Deposit date: 2017-04-09 Release date: 2018-07-18 Method: ELECTRON MICROSCOPY (7 Å) Cite: Structural mechanism for nucleotide-driven remodeling of the AAA-ATPase unfoldase in the activated human 26S proteasome. Nat Commun, 9, 2018
5BWM	The complex structure of C3cer exoenzyme and GDP bound RhoA (NADH-bound state) Descriptor: 1,2-ETHANEDIOL, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ADP-ribosyltransferase, ... Authors: Toda, A, Tsurumura, T, Yoshida, T, Tsuge, H. Deposit date: 2015-06-08 Release date: 2015-06-24 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Rho GTPase Recognition by C3 Exoenzyme Based on C3-RhoA Complex Structure. J.Biol.Chem., 290, 2015
1UEV	Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ... Authors: Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-05-21 Release date: 2003-12-02 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure. Embo J., 22, 2003
1A2B	HUMAN RHOA COMPLEXED WITH GTP ANALOGUE Descriptor: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, MAGNESIUM ION, TRANSFORMING PROTEIN RHOA Authors: Ihara, K, Muraguchi, S, Kato, M, Shimizu, T, Shirakawa, M, Kuroda, S, Kaibuchi, K, Hakoshima, T. Deposit date: 1997-12-26 Release date: 1998-06-17 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structure of human RhoA in a dominantly active form complexed with a GTP analogue. J.Biol.Chem., 273, 1998
4FU3	CID of human RPRD1B Descriptor: CHLORIDE ION, Regulation of nuclear pre-mRNA domain-containing protein 1B, UNKNOWN ATOM OR ION Authors: Ni, Z, Xu, C, Tempel, W, El Bakkouri, M, Loppnau, P, Guo, X, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Greenblatt, J.F, Structural Genomics Consortium (SGC) Deposit date: 2012-06-28 Release date: 2012-08-29 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.9 Å) Cite: CID of human RPRD1B TO BE PUBLISHED
5HRK	The crystal structure of AsfvPolX(H115F mutant): 1nt-gap(P) DNA2:dGTP ternary complex Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*GP*TP*TP*CP*TP*AP*TP*GP*TP*GP*TP*AP*CP*TP*CP*AP*C)-3'), DNA (5'-D(*GP*TP*GP*AP*GP*TP*AP*CP*A)-3'), ... Authors: Chen, Y.Q, Zhang, J, Gan, J.H. Deposit date: 2016-01-23 Release date: 2017-01-18 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.9 Å) Cite: The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1 To Be Published
5HRF	The crystal structure of AsfvPolX: DNA5: dGTP ternary complex Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*GP*AP*TP*CP*CP*T*)-3'), DNA polymerase beta-like protein, ... Authors: Chen, Y.Q, Zhang, J, Gan, J.H. Deposit date: 2016-01-23 Release date: 2017-01-18 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.25 Å) Cite: The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1 To Be Published
5HRH	The crystal structure of AsfvPolX(H115F/R127A mutant): 1nt-gap(P) DNA2:dGTP ternary complex Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*GP*TP*TP*CP*TP*AP*TP*GP*TP*GP*TP*AP*CP*TP*CP*AP*C)-3'), DNA (5'-D(*GP*TP*GP*AP*GP*TP*AP*CP*A*)-3'), ... Authors: Chen, Y.Q, Zhang, J, Gan, J.H. Deposit date: 2016-01-23 Release date: 2017-01-18 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (3 Å) Cite: The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1 To Be Published
5HRL	The crystal structure of AsfvPolX: 1nt-gap(P) DNA2: dGTP ternary complex. Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*GP*TP*TP*CP*TP*AP*TP*GP*TP*GP*TP*AP*CP*TP*CP*AP*C)-3'), DNA (5'-D(*GP*TP*GP*AP*GP*TP*AP*CP*A)-3'), ... Authors: Chen, Y.Q, Zhang, J, Gan, J.H. Deposit date: 2016-01-23 Release date: 2017-01-18 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.4 Å) Cite: The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1 To Be Published
4IL1	Crystal Structure of the Rat Calcineurin Descriptor: CALCIUM ION, Calmodulin, Calcineurin subunit B type 1, ... Authors: Ye, Q, Faucher, F, Jia, Z. Deposit date: 2012-12-28 Release date: 2013-10-02 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural basis of calcineurin activation by calmodulin. Cell Signal, 25, 2013
4I5H	Crystal Structure of a Double Mutant Rat Erk2 Complexed With a Type II Quinazoline Inhibitor Descriptor: Mitogen-activated protein kinase 1, N-{3-[2-(cyclopropylamino)quinazolin-6-yl]-4-methylphenyl}-3-(trifluoromethyl)benzamide Authors: Hari, S.B, Maly, D.J, Merritt, E.A. Deposit date: 2012-11-28 Release date: 2013-07-10 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Sequence determinants of a specific inactive protein kinase conformation. Chem.Biol., 20, 2013

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