PDB: 250 件ウェブページステータス検索Chemie searchBIRD

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1KHW	Crystal Structure of Rabbit Hemorrhagic Disease Virus RNA-dependent RNA polymerase complexed with Mn2+ 分子名称: MANGANESE (II) ION, RNA-DIRECTED RNA POLYMERASE 著者 Ng, K.K, Cherney, M.M, Vazquez, A.L, Machin, A, Alonso, J.M, Parra, F, James, M.N. 登録日 2001-12-01 公開日 2002-01-16 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structures of active and inactive conformations of a caliciviral RNA-dependent RNA polymerase. J.Biol.Chem., 277, 2002
5JXS	Mutant GC216/7AA of 3D polymerase from Foot-and-Mouth Disease Virus 分子名称: MAGNESIUM ION, RNA Primer, RNA Template, ... 著者 Verdaguer, N, Ferrer-Orta, C. 登録日 2016-05-13 公開日 2016-06-01 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Both cis and trans Activities of Foot-and-Mouth Disease Virus 3D Polymerase Are Essential for Viral RNA Replication. J.Virol., 90, 2016
3DDK	Coxsackievirus B3 3Dpol RNA Dependent RNA Polymerase 分子名称: RNA polymerase B3 3Dpol, SODIUM ION, SULFATE ION 著者 Campagnola, G, Weygandt, M.H, Scoggin, K.E, Peersen, O.B. 登録日 2008-06-05 公開日 2008-09-23 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Crystal Structure of Coxsackievirus B3 3Dpol Highlights Functional Importance of Residue 5 in Picornaviral Polymerases J.Virol., 82, 2008
5Y6Z	Crystal structure of the coxsackievirus A16 polymerase elongation complex 分子名称: GLYCEROL, Genome polyprotein, MAGNESIUM ION, ... 著者 Bi, P, Shu, B, Gong, P. 登録日 2017-08-15 公開日 2017-12-27 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of the coxsackievirus A16 RNA-dependent RNA polymerase elongation complex reveals novel features in motif A dynamics Virol Sin, 32, 2017
2WK4	Dimeric structure of D347G D348G mutant of the sapporovirus RNA dependent RNA polymerase 分子名称: GLYCEROL, PROTEASE-POLYMERASE P70 著者 Fullerton, S.W.B, Robel, I, Schuldt, L, Gebhardt, J, Tucker, P.A, Rohayem, J. 登録日 2009-06-05 公開日 2010-09-01 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.98 Å) 主引用文献 Dimeric Structure of D347G D348G Mutant of the Sapporovirus Sapporovirus RNA Dependent RNA Polymerase To be Published
5TSN	Crystal structures of Norwalk virus polymerase bound to an RNA primer-template duplex 分子名称: MANGANESE (II) ION, Norwalk virus polymerase, RNA (5'-R(*UP*GP*CP*CP*CP*GP*GP*G)-3') 著者 Shaik, M.M, Ng, K.K. 登録日 2016-10-30 公開日 2017-04-12 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Norovirus RNA-dependent RNA polymerase: A computational study of metal-binding preferences. Proteins, 85, 2017
5XE0	Crystal structure of EV-D68-3Dpol in complex with GTP 分子名称: GUANOSINE-5'-TRIPHOSPHATE, Genome polyprotein 著者 Xie, W, Wang, C, Wang, Z, Li, Q, Wang, C. 登録日 2017-03-30 公開日 2017-06-28 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal Structure and Thermostability Characterization of Enterovirus D68 3Dpol J. Virol., 91, 2017
4WFZ	Coxsackievirus B3 3Dpol RNA Dependent RNA Polymerase - NaCl Crystal Form 分子名称: RNA-directed RNA polymerase, SODIUM ION 著者 Peersen, O.B, McDonald, S.M. 登録日 2014-09-17 公開日 2014-10-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.803 Å) 主引用文献 Structure-Function Relationships Underlying the Replication Fidelity of Viral RNA-Dependent RNA Polymerases. J.Virol., 89, 2015
4WFY	Coxsackievirus B3 Polymerase - F232L Mutant - AmSO4 Crystal Form 分子名称: GLYCEROL, RNA-directed RNA polymerase, SULFATE ION 著者 Peersen, O.B, McDonald, S.M. 登録日 2014-09-17 公開日 2014-10-22 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 Structure-Function Relationships Underlying the Replication Fidelity of Viral RNA-Dependent RNA Polymerases. J.Virol., 89, 2015
3SFU	crystal structure of murine norovirus RNA dependent RNA polymerase in complex with ribavirin 分子名称: 1-(beta-D-ribofuranosyl)-1H-1,2,4-triazole-3-carboxamide, GLYCEROL, MAGNESIUM ION, ... 著者 Kim, K.H, Alam, I. 登録日 2011-06-14 公開日 2012-05-09 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (2.501 Å) 主引用文献 Crystal structures of murine norovirus-1 RNA-dependent RNA polymerase in complex with 2-thiouridine or ribavirin. Virology, 426, 2012
2UUT	The 2.4 angstrom resolution structure of the D346G mutant of the Sapporo Virus RdRp polymerase 分子名称: RNA-DIRECTED RNA POLYMERASE 著者 Fullerton, S.W.B, Robel, I, Schuldt, L, Gebhardt, J, Tucker, P, Rohayem, J. 登録日 2007-03-07 公開日 2007-05-01 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 The 2.4 Angstrom Resolution Structure of the D346G Mutant of the Sapporo Virus Rdrp Polymerase To be Published
2UUW	2.75 angstrom structure of the D347G D348G mutant structure of Sapporo Virus RdRp Polymerase 分子名称: RNA-DIRECTED RNA POLYMERASE 著者 Fullerton, S, Robel, I, Schuldt, L, Gebhardt, J, Tucker, P, Rohayem, J. 登録日 2007-03-07 公開日 2007-05-01 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.76 Å) 主引用文献 The 2.76 Angstrom Resolution Structure of the D347G D348G Mutant Structure of Sapporo Virus Rdrp Polymerase To be Published
3SFG	crystal structure of murine norovirus RNA dependent RNA polymerase in complex with 2thiouridine(2TU) 分子名称: 1-(beta-D-ribofuranosyl)-2-thioxo-2,3-dihydropyrimidin-4(1H)-one, GLYCEROL, MAGNESIUM ION, ... 著者 Kim, K.H, Alam, I. 登録日 2011-06-13 公開日 2012-05-09 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (2.209 Å) 主引用文献 Crystal structures of murine norovirus-1 RNA-dependent RNA polymerase in complex with 2-thiouridine or ribavirin. Virology, 426, 2012
8C2P	FMDV 3D polymerase in complex with 3B3 分子名称: Protein 3B-3, RNA-directed RNA polymerase 3D-POL 著者 Ferrer-Orta, C, Veraguer, N. 登録日 2022-12-22 公開日 2023-04-26 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Dual role of the foot-and-mouth disease virus 3B1 protein in the replication complex: As protein primer and as an essential component to recruit 3Dpol to membranes. Plos Pathog., 19, 2023
8C1N	FMDV 3D polymerase in complex with 3B1 protein solved in P212121 space group 分子名称: ACETATE ION, GLYCEROL, Protein 3B-1, ... 著者 Ferrer-Orta, C, Veraguer, N. 登録日 2022-12-20 公開日 2023-04-26 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Dual role of the foot-and-mouth disease virus 3B1 protein in the replication complex: As protein primer and as an essential component to recruit 3Dpol to membranes. Plos Pathog., 19, 2023
5I61	Crystal structure of the RNA-dependent RNA polymerase of a human picorbirnavirus 分子名称: Potential RNA-dependent RNA polymerase 著者 Collier, A.M, Guo, Y.R, Tao, Y.J. 登録日 2016-02-15 公開日 2016-03-16 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Initiation of RNA Polymerization and Polymerase Encapsidation by a Small dsRNA Virus. Plos Pathog., 12, 2016
5I62	Crystal structure of the insertion loop deletion mutant of the RNA-dependent RNA polymerase of a human picorbirnavirus 分子名称: Potential RNA-dependent RNA polymerase 著者 Collier, A.M, Guo, Y.R, Tao, Y.J. 登録日 2016-02-15 公開日 2016-03-16 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.001 Å) 主引用文献 Initiation of RNA Polymerization and Polymerase Encapsidation by a Small dsRNA Virus. Plos Pathog., 12, 2016
6GVV	Mutant M16A of RNA dependent RNA polymerase 3D from Foot-and-Mouth disease Virus 分子名称: GLYCEROL, RNA polymerase 3D 著者 Verdaguer, N, Ferrer Orta, C. 登録日 2018-06-21 公開日 2018-08-01 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Contribution of a Multifunctional Polymerase Region of Foot-and-Mouth Disease Virus to Lethal Mutagenesis. J.Virol., 92, 2018
6GVY	Mutant M16A of RNA dependent RNA polymerase 3D from Foot-and-Mouth disease Virus complexed with an template -primer RNA 分子名称: GLYCEROL, Genome polyprotein, RNA (5'-R(P*CP*CP*GP*GP*G)-3'), ... 著者 Verdaguer, N, Ferrer-Orta, C. 登録日 2018-06-21 公開日 2018-08-01 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Contribution of a Multifunctional Polymerase Region of Foot-and-Mouth Disease Virus to Lethal Mutagenesis. J. Virol., 92, 2018
8IIB	Crystal structure of Israeli acute paralysis virus RNA-dependent RNA polymerase delta85 mutant (residues 86-546) 分子名称: CADMIUM ION, CHLORIDE ION, MAGNESIUM ION, ... 著者 Fang, X, Lu, G, Hou, C, Gong, P. 登録日 2023-02-24 公開日 2023-06-07 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 Unusual substructure conformations observed in crystal structures of a dicistrovirus RNA-dependent RNA polymerase suggest contribution of the N-terminal extension in proper folding. Virol Sin, 38, 2023
4R0E	Crystal Structure of the Poliovirus RNA-Dependent RNA Polymerase Low-Fidelity Mutant 3Dpol H273R 分子名称: RNA-directed RNA polymerase 著者 Marcotte, L.L, Gohara, D.W, Filman, D.J, Hogle, J.M. 登録日 2014-07-30 公開日 2014-11-12 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural Dynamics as a Contributor to Error-prone Replication by an RNA-dependent RNA Polymerase. J.Biol.Chem., 289, 2014
4QPX	NV polymerase post-incorporation-like complex 分子名称: GLYCEROL, MANGANESE (II) ION, Polyprotein, ... 著者 Zamyatkin, D.F, Parra, F, Grochulski, P, Ng, K.K.S. 登録日 2014-06-25 公開日 2015-04-22 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Structure of a backtracked state reveals conformational changes similar to the state following nucleotide incorporation in human norovirus polymerase. Acta Crystallogr.,Sect.D, 70, 2014
8IIC	Crystal structure of Israeli acute paralysis virus RNA-dependent RNA polymerase delta40 mutant (residues 41-546) 分子名称: Polymerase polyprotein 著者 Fang, X, Lu, G, Hou, C, Gong, P. 登録日 2023-02-24 公開日 2023-06-07 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Unusual substructure conformations observed in crystal structures of a dicistrovirus RNA-dependent RNA polymerase suggest contribution of the N-terminal extension in proper folding. Virol Sin, 38, 2023
5N8X	Trigonal structure of mutant V173I of 3D polymerase from Foot-and-Mouth Disease Virus 分子名称: 3D polymerase, GLYCEROL, MANGANESE (II) ION 著者 Ferrer-Orta, C, Verdaguer, N. 登録日 2017-02-24 公開日 2017-05-10 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Molecular and Functional Bases of Selection against a Mutation Bias in an RNA Virus. Genome Biol Evol, 9, 2017
5N95	Tetragonal structure of mutant V173I of 3D polymerase from Foot-and-Mouth Disease Virus 分子名称: 3D polymerase, TRIPHOSPHATE 著者 Ferrer-Orta, C, Verdaguer, N. 登録日 2017-02-24 公開日 2017-05-10 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Molecular and Functional Bases of Selection against a Mutation Bias in an RNA Virus. Genome Biol Evol, 9, 2017

 

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