PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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3P57	Crystal structure of the p300 TAZ2 domain bound to MEF2 on DNA 分子名称: DNA (5'-D(*A*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*GP*A)-3'), DNA (5'-D(*TP*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*TP*T)-3'), Histone acetyltransferase p300, ... 著者 He, J, Ye, J, Riquelme, C, Liu, J.O. 登録日 2010-10-08 公開日 2011-08-10 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.1921 Å) 主引用文献 Structure of p300 bound to MEF2 on DNA reveals a mechanism of enhanceosome assembly. Nucleic Acids Res., 39, 2011
6N4G	Crystal structure of a tetrameric DNA fold-back quadruplex 分子名称: BARIUM ION, DNA (5'-D(*CP*GP*TP*TP*AP*GP*GP*CP*G)-3') 著者 Chu, B, Paukstelis, P.J. 登録日 2018-11-19 公開日 2018-12-05 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Crystal Structure of a Tetrameric DNA Fold-Back Quadruplex. J. Am. Chem. Soc., 140, 2018
1EN9	1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM. 分子名称: DNA (5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3'), MAGNESIUM ION 著者 Chiu, T.K, Dickerson, R.E. 登録日 2000-03-20 公開日 2000-09-25 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (0.985 Å) 主引用文献 1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium. J.Mol.Biol., 301, 2000
3AV4	Crystal structure of mouse DNA methyltransferase 1 分子名称: DNA (cytosine-5)-methyltransferase 1, ZINC ION 著者 Takeshita, K, Suetake, I, Yamashita, E, Suga, M, Narita, H, Nakagawa, A, Tajima, S. 登録日 2011-02-22 公開日 2011-05-04 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1). Proc.Natl.Acad.Sci.USA, 108, 2011
6G3B	AvaII restriction endonuclease in complex with an RNA/DNA hybrid 分子名称: DNA (5'-D(*CP*CP*AP*TP*GP*GP*TP*CP*CP*TP*A)-3'), RNA (5'-R(P*GP*UP*AP*GP*GP*AP*CP*CP*AP*UP*G)-3'), Type II site-specific deoxyribonuclease 著者 Kisiala, M, Kowalska, M, Czapinska, H, Bochtler, M. 登録日 2018-03-24 公開日 2019-04-10 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Restriction endonucleases that cleave RNA/DNA heteroduplexes bind dsDNA in A-like conformation Nucleic Acids Res., 2020
6GVU	NMR structure of the DNA-bound helix bundle domain from the functional pRN1 primase 分子名称: DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3'), functional pRN1 primase 著者 Boudet, J, Lipps, G, Allain, F.H.-T. 登録日 2018-06-21 公開日 2018-12-26 最終更新日 2024-07-03 実験手法 SOLUTION NMR 主引用文献 A Small Helical Bundle Prepares Primer Synthesis by Binding Two Nucleotides that Enhance Sequence-Specific Recognition of the DNA Template. Cell, 176, 2019
6GZ7	Polyamide - DNA complex NMR structure 分子名称: DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), dimethyl-[3-[3-[[1-methyl-4-[[1-methyl-4-[[1-methyl-4-[[1-methyl-4-[4-[[1-methyl-4-[[1-methyl-4-[[1-methyl-4-[(1-propan-2-ylimidazol-2-yl)carbonylamino]pyrrol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]butanoylamino]imidazol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]propanoylamino]propyl]azanium 著者 Aman, K. 登録日 2018-07-03 公開日 2018-11-28 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural and Kinetic Profiling of Allosteric Modulation of Duplex DNA Induced by DNA-Binding Polyamide Analogues. Chemistry, 25, 2019
4GX9	Crystal structure of a DNA polymerase III alpha-epsilon chimera 分子名称: DNA polymerase III subunit epsilon,DNA polymerase III subunit alpha 著者 Li, N, Horan, N, Xu, Z.-Q, Jacques, D, Dixon, N.E, Oakley, A.J. 登録日 2012-09-04 公開日 2013-04-03 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Proofreading exonuclease on a tether: the complex between the E. coli DNA polymerase III subunits alpha, {varepsilon}, theta and beta reveals a highly flexible arrangement of the proofreading domain Nucleic Acids Res., 41, 2013
1EN3	1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM 分子名称: DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3'), MAGNESIUM ION 著者 Chiu, T.K, Dickerson, R.E. 登録日 2000-03-20 公開日 2000-09-25 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (0.985 Å) 主引用文献 1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium. J.Mol.Biol., 301, 2000
1ESG	RESTRICTION ENDONUCLEASE BAMHI BOUND TO A NON-SPECIFIC DNA. 分子名称: DNA (5'-D(*TP*GP*AP*AP*TP*CP*CP*A)-3'), DNA (5'-D(*TP*GP*GP*AP*TP*TP*CP*A)-3'), TYPE II RESTRICTION ENZYME BAMHI 著者 Viadiu, H, Aggarwal, A.K. 登録日 2000-04-09 公開日 2000-05-31 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure of BamHI bound to nonspecific DNA: a model for DNA sliding. Mol.Cell, 5, 2000
5LS8	Light-activated ruthenium complex bound to a DNA quadruplex 分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*A)-3'), POTASSIUM ION, delta-[Ru(tap2-dppz-CN)]2+, ... 著者 McQuaid, K.T, Abell, H, Hall, J.P, Cardin, C.J. 登録日 2016-08-22 公開日 2018-01-17 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Structural Studies Reveal Enantiospecific Recognition of a DNA G-Quadruplex by a Ruthenium Polypyridyl Complex. Angew.Chem.Int.Ed.Engl., 58, 2019
6M6K	NMR solution structure of a DNA minidumbbell containing an abasic bulge between two CCTG repeats 分子名称: DNA (5'-D(*CP*TP*TP*GP*(3DR)P*CP*TP*TP*G)-3'), SODIUM ION 著者 Wan, L, Lam, S.L, Guo, P. 登録日 2020-03-15 公開日 2020-07-29 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Rational design of a reversible Mg2+/EDTA-controlled molecular switch based on a DNA minidumbbell. Chem.Commun.(Camb.), 56, 2020
6M6J	NMR solution structure of a DNA minidumbbell containing an abasic bulge between two CTTG repeats 分子名称: DNA (5'-D(*CP*TP*TP*GP*(3DR)P*CP*TP*TP*G)-3'), SODIUM ION 著者 Wan, L, Lam, S.L, Guo, P. 登録日 2020-03-15 公開日 2020-07-29 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Rational design of a reversible Mg2+/EDTA-controlled molecular switch based on a DNA minidumbbell. Chem.Commun.(Camb.), 56, 2020
1C38	SOLUTION STRUCTURE OF A QUADRUPLEX FORMING DNA AND ITS INTERMEDIATE 分子名称: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3'), POTASSIUM ION 著者 Bolton, P.H, Marathias, V.M, Wang, K. 登録日 1999-07-25 公開日 1999-08-25 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structures of the potassium-saturated, 2:1, and intermediate, 1:1, forms of a quadruplex DNA. Nucleic Acids Res., 28, 2000
4K74	The UmuC subunit of the E. coli DNA polymerase V shows a unique interaction with the beta-clamp processivity factor. 分子名称: DNA polymerase III subunit beta, UmuC peptide 著者 Patoli, A.A, Winter, J.A, Bunting, K.A. 登録日 2013-04-16 公開日 2013-07-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 The UmuC subunit of the E. coli DNA polymerase V shows a unique interaction with the beta-clamp processivity factor. Bmc Struct.Biol., 13, 2013
6W89	Structure of DNMT3A (R882H) in complex with CGA DNA 分子名称: CGA DNA (25-MER), CITRIC ACID, DNA (cytosine-5)-methyltransferase 3-like, ... 著者 Anteneh, H, Song, J. 登録日 2020-03-20 公開日 2020-04-15 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.499 Å) 主引用文献 Structural basis for impairment of DNA methylation by the DNMT3A R882H mutation. Nat Commun, 11, 2020
6W8J	Structure of DNMT3A (R882H) in complex with CAG DNA 分子名称: CAG DNA (25-MER), DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3A, ... 著者 Anteneh, H, Song, J. 登録日 2020-03-20 公開日 2020-04-15 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.445 Å) 主引用文献 Structural basis for impairment of DNA methylation by the DNMT3A R882H mutation. Nat Commun, 11, 2020
6W8D	Structure of DNMT3A (R882H) in complex with CGT DNA 分子名称: CGT DNA (25-MER), DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3A, ... 著者 Anteneh, H, Song, J. 登録日 2020-03-20 公開日 2020-04-15 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.598 Å) 主引用文献 Structural basis for impairment of DNA methylation by the DNMT3A R882H mutation. Nat Commun, 11, 2020
7OHE	A self-complementary DNA dodecamer duplex contaning 5-hydroxymethylcitosine 分子名称: DNA (5'-D(*CP*GP*CP*GP*TP*CP*GP*AP*CP*GP*CP*G)-3') 著者 Battistini, F, Dans, P.D, Terrazas, M, Castellazzi, C.L, Portella, G, Labrador, M, Villegas, N, Brun-Heath, I, Gonzalez, C, Orozco, M. 登録日 2021-05-10 公開日 2021-11-03 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 The Impact of the HydroxyMethylCytosine epigenetic signature on DNA structure and function. Plos Comput.Biol., 17, 2021
7OHM	A self-complementary DNA dodecamer duplex contaning 5-hydroxymethylcitosine 分子名称: DNA (5'-D(*CP*GP*AP*(DH)P*GP*TP*CP*G)-3') 著者 Battistini, F, Dans, P.D, Terrazas, M, Castellazzi, C.L, Portella, G, Labrador, M, Villegas, N, Brun-Heath, I, Gonzalez, C, Orozco, M. 登録日 2021-05-11 公開日 2021-11-03 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 The Impact of the HydroxyMethylCytosine epigenetic signature on DNA structure and function. Plos Comput.Biol., 17, 2021
7OHJ	A self-complementary DNA dodecamer duplex contaning 5-hydroxymethylcitosine 分子名称: DNA (5'-D(*CP*GP*AP*CP*GP*TP*CP*G)-3') 著者 Battistini, F, Dans, P.D, Terrazas, M, Castellazzi, C.L, Portella, G, Labrador, M, Villegas, N, Brun-Heath, I, Gonzalez, C, Orozco, M. 登録日 2021-05-11 公開日 2021-11-03 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 The Impact of the HydroxyMethylCytosine epigenetic signature on DNA structure and function. Plos Comput.Biol., 17, 2021
7OGV	A self-complementary DNA dodecamer duplex contaning 5-hydroxymethylcitosine 分子名称: DNA (5'-D(*(P*GP*CP*GP*TP*(DH)P*GP*AP*CP*GP*CP*G-3') 著者 Battistini, F, Dans, P.D, Terrazas, M, Castellazzi, C.L, Portella, G, Labrador, M, Villegas, N, Brun-Heath, I, Gonzalez, C, Orozco, M. 登録日 2021-05-07 公開日 2021-11-03 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 The Impact of the HydroxyMethylCytosine epigenetic signature on DNA structure and function. Plos Comput.Biol., 17, 2021
8KGS	Structure of African swine fever virus topoisomerase II in complex with dsDNA 分子名称: DNA topoisomerase 2, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 著者 Cong, J, Xin, Y, Li, X, Chen, Y. 登録日 2023-08-19 公開日 2024-04-03 最終更新日 2024-08-14 実験手法 X-RAY DIFFRACTION (2.603 Å) 主引用文献 Structural insights into the DNA topoisomerase II of the African swine fever virus. Nat Commun, 15, 2024
8H7A	Crystal structure of the dimer form KAT6A WH domain with its bound double stranded DNA 分子名称: DNA (5'-D(*GP*GP*TP*CP*CP*GP*AP*CP*GP*GP*AP*CP*C)-3'), DNA (5'-D(*GP*GP*TP*CP*CP*GP*TP*CP*GP*GP*AP*CP*C)-3'), Histone acetyltransferase KAT6A, ... 著者 Wang, Z, Cao, Y. 登録日 2022-10-19 公開日 2023-01-18 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 The histone acetyltransferase KAT6A is recruited to unmethylated CpG islands via a DNA binding winged helix domain. Nucleic Acids Res., 51, 2023
7TZ1	Crystal Structure of a Mycobacteriophage Cluster A2 Immunity Repressor:DNA Complex 分子名称: DNA (5'-D(P*CP*CP*CP*GP*CP*TP*TP*GP*AP*CP*AP*GP*CP*CP*AP*CP*CP*GP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*CP*GP*GP*TP*GP*GP*CP*TP*GP*TP*CP*AP*AP*GP*CP*GP*GP*G)-3'), Immunity repressor 著者 McGinnis, R.J, Brambley, C.A, Stamey, B, Green, W.C, Gragg, K.N, Cafferty, E.R, Terwilliger, T.C, Hammel, M, Hollis, T.J, Miller, J.M, Gainey, M.D, Wallen, J.R. 登録日 2022-02-15 公開日 2022-07-20 最終更新日 2022-07-27 実験手法 X-RAY DIFFRACTION (2.79 Å) 主引用文献 A monomeric mycobacteriophage immunity repressor utilizes two domains to recognize an asymmetric DNA sequence. Nat Commun, 13, 2022

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