PDB: 2705 件ウェブページステータス検索Chemie searchBIRD

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6O9J	70S Elongation Competent Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Frank, J, Gonzalez Jr, R.L, Kaledhonkar, S, Fu, Z, Caban, K, Li, W, Chen, B, Sun, M. 登録日 2019-03-14 公開日 2019-05-29 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Late steps in bacterial translation initiation visualized using time-resolved cryo-EM. Nature, 570, 2019
6QIK	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles 分子名称: 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Kargas, V, Warren, A.J. 登録日 2019-01-20 公開日 2019-06-26 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Mechanism of completion of peptidyltransferase centre assembly in eukaryotes. Elife, 8, 2019
1VQK	The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui 分子名称: 23S ribosomal rna, 5'-R(*CP*CP*(DA)*(PHE)*(ACA))-3', 50S RIBOSOMAL PROTEIN L10E, ... 著者 Schmeing, T.M, Steitz, T.A. 登録日 2004-12-16 公開日 2005-11-29 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction. Mol.Cell, 20, 2005
1VQL	The structure of the transition state analogue "DCSN" bound to the large ribosomal subunit of haloarcula marismortui 分子名称: 23S ribosomal rna, 5'-R(*CP*CP*(PPU)*(TSE)*(DA)*CP*C)-3', 50S RIBOSOMAL PROTEIN L10E, ... 著者 Schmeing, T.M, Steitz, T.A. 登録日 2004-12-16 公開日 2005-11-29 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction. Mol.Cell, 20, 2005
6OFX	Non-rotated ribosome (Structure I) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Svidritskiy, E, Demo, G, Loveland, A.B, Xu, C, Korostelev, A.A. 登録日 2019-04-01 公開日 2019-09-25 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Extensive ribosome and RF2 rearrangements during translation termination. Elife, 8, 2019
8WIC	Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH. 分子名称: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Kumar, N, Sharma, S, Kaushal, P.S. 登録日 2023-09-24 公開日 2024-02-28 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH. Nat Commun, 15, 2024
8WI8	Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, bS1 and RafH. 分子名称: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Kumar, N, Sharma, S, Kaushal, P.S. 登録日 2023-09-24 公開日 2024-02-28 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH. Nat Commun, 15, 2024
8WIB	Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Kumar, N, Sharma, S, Kaushal, P.S. 登録日 2023-09-24 公開日 2024-02-28 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH. Nat Commun, 15, 2024
6Q95	Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome 分子名称: 16S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 30S ribosomal protein S10, ... 著者 Rae, C.D. 登録日 2018-12-17 公開日 2019-02-27 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 How a circularized tmRNA moves through the ribosome. Science, 363, 2019
8WI7	Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Kumar, N, Sharma, S, Kaushal, P.S. 登録日 2023-09-24 公開日 2024-02-28 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH. Nat Commun, 15, 2024
1W2B	Trigger Factor ribosome binding domain in complex with 50S 分子名称: 23S RRNA, 50S RIBOSOMAL PROTEIN L10E, 50S RIBOSOMAL PROTEIN L13P, ... 著者 Ferbitz, L, Maier, T, Patzelt, H, Bukau, B, Deuerling, E, Ban, N. 登録日 2004-07-01 公開日 2004-09-02 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Trigger Factor in Complex with the Ribosome Forms a Molecular Cradle for Nascent Proteins Nature, 431, 2004
6Q97	Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rae, C.D. 登録日 2018-12-17 公開日 2019-03-13 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 How a circularized tmRNA moves through the ribosome. Science, 363, 2019
6OM0	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Li, W, Cate, J.H.D. 登録日 2019-04-17 公開日 2019-06-19 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule. Nat.Struct.Mol.Biol., 26, 2019
6OT3	RF2 accommodated state bound Release complex 70S at 24 ms 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Fu, Z, Indrisiunaite, G, Kaledhonkar, S, Shah, B, Sun, M, Chen, B, Grassucci, R.A, Ehrenberg, M, Frank, J. 登録日 2019-05-02 公開日 2019-06-19 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy. Nat Commun, 10, 2019
6OST	RF2 pre-accommodated state bound Release complex 70S at 24ms 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Fu, Z, Indrisiunaite, G, Kaledhonkar, S, Shah, B, Sun, M, Chen, B, Grassucci, R.A, Ehrenberg, M, Frank, J. 登録日 2019-05-02 公開日 2019-06-19 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy. Nat Commun, 10, 2019
6QDW	Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide 分子名称: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Schulte, L, Reitz, J, Hodirnau, V.V, Kudlinzki, D, Mao, J, Glaubitz, C, Frangakis, A, Schwalbe, H. 登録日 2019-01-03 公開日 2020-01-15 最終更新日 2020-12-02 実験手法 ELECTRON MICROSCOPY (2.83 Å) 主引用文献 Cysteine oxidation and disulfide formation in the ribosomal exit tunnel. Nat Commun, 11, 2020
1VQN	The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui 分子名称: 23S ribosomal rna, 5'-R(*CP*CP*(PPU)*(LOF))-3', 5'-R(*CP*CP*AP*(PHE)*(ACA)*(BTN))-3', ... 著者 Schmeing, T.M, Steitz, T.A. 登録日 2004-12-16 公開日 2005-11-29 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA. Nature, 438, 2005
6O90	Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Jogl, G, Khayat, R. 登録日 2019-03-12 公開日 2020-09-23 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.49 Å) 主引用文献 Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis. Sci Rep, 10, 2020
8VS9	Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Teran, D, Zhang, Y, Korostelev, A.A. 登録日 2024-01-23 公開日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon. Front Microbiol, 15, 2024
6QTZ	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles 分子名称: 25S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Kargas, V, Warren, A.J. 登録日 2019-02-26 公開日 2019-06-26 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Mechanism of completion of peptidyltransferase centre assembly in eukaryotes. Elife, 8, 2019
1VQM	The structure of the transition state analogue "DAN" bound to the large ribosomal subunit of haloarcula marismortui 分子名称: 23S ribosomal rna, 5'-R(*CP*CP*(PPU)P*(PO2)P*(DA)P*C*C)-3'), 50S RIBOSOMAL PROTEIN L10E, ... 著者 Schmeing, T.M, Steitz, T.A. 登録日 2004-12-16 公開日 2005-11-29 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction. Mol.Cell, 20, 2005
6OG7	70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Svidritskiy, E, Demo, G, Loveland, A.B, Xu, C, Korostelev, A.A. 登録日 2019-04-01 公開日 2019-09-25 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Extensive ribosome and RF2 rearrangements during translation termination. Elife, 8, 2019
6QNR	70S ribosome elongation complex (EC) with experimentally assigned potassium ions 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Khusainov, I, Yusupov, M, Yusupova, G. 登録日 2019-02-11 公開日 2019-06-19 最終更新日 2024-04-24 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction. Nat Commun, 10, 2019
8UQP	Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... 著者 Molodtsov, V, Wang, C, Ebright, R.H. 登録日 2023-10-24 公開日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome Nat.Struct.Mol.Biol., 2024
6OTR	Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Pavelich, I.P, Hoffer, E.D, Maehigashi, T, Dunham, C.M. 登録日 2019-05-03 公開日 2019-08-21 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.12 Å) 主引用文献 Monomeric YoeB toxin retains RNase activity but adopts an obligate dimeric form for thermal stability. Nucleic Acids Res., 47, 2019

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